==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 15-MAR-06 2DGR . COMPND 2 MOLECULE: RING FINGER AND KH DOMAIN-CONTAINING PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 83 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6773.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 57 68.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 13.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 13.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 10.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 22 26.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 99 A G 0 0 138 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -61.8 29.9 13.3 2.2 2 100 A S + 0 0 124 1,-0.4 2,-0.3 2,-0.0 3,-0.1 0.714 360.0 1.9-117.5 -56.9 28.1 16.3 0.6 3 101 A S S S+ 0 0 115 1,-0.1 -1,-0.4 0, 0.0 0, 0.0 -0.973 84.2 83.5-138.3 151.8 27.3 15.6 -3.0 4 102 A G + 0 0 82 -2,-0.3 2,-0.3 1,-0.3 -1,-0.1 0.696 58.0 112.2 121.5 53.7 27.9 12.7 -5.4 5 103 A S - 0 0 115 -3,-0.1 2,-0.9 2,-0.0 -1,-0.3 -0.970 57.1-132.3-154.7 135.7 25.1 10.1 -5.1 6 104 A S S S+ 0 0 130 -2,-0.3 2,-0.1 2,-0.0 0, 0.0 -0.783 73.5 65.4 -92.9 105.5 22.3 8.9 -7.3 7 105 A G + 0 0 67 -2,-0.9 3,-0.0 3,-0.0 -2,-0.0 -0.138 36.9 164.9 145.7 116.3 19.1 8.8 -5.3 8 106 A G + 0 0 71 -2,-0.1 -2,-0.0 2,-0.0 0, 0.0 0.746 61.6 49.5-111.3 -75.3 16.9 11.4 -3.7 9 107 A Q S S- 0 0 121 50,-0.1 2,-0.3 1,-0.1 50,-0.2 0.140 74.2-134.0 -57.5-178.0 13.4 10.2 -2.7 10 108 A T E -A 58 0A 55 48,-2.5 48,-3.3 -3,-0.0 2,-0.4 -0.948 4.5-141.9-141.7 161.2 12.8 7.0 -0.7 11 109 A T E -A 57 0A 68 -2,-0.3 2,-0.3 46,-0.2 46,-0.2 -0.985 16.1-172.1-131.3 124.2 10.5 4.0 -0.8 12 110 A I E -A 56 0A 38 44,-2.1 44,-2.7 -2,-0.4 2,-0.7 -0.828 19.8-133.6-114.3 153.1 9.0 2.2 2.2 13 111 A Q E -A 55 0A 119 -2,-0.3 2,-0.3 42,-0.2 42,-0.2 -0.891 19.5-151.7-109.9 106.3 7.1 -1.0 2.5 14 112 A V E -A 54 0A 2 40,-2.2 40,-1.6 -2,-0.7 2,-0.6 -0.561 8.0-143.4 -77.6 135.6 3.9 -0.7 4.7 15 113 A R E +A 53 0A 196 -2,-0.3 38,-0.2 38,-0.2 -1,-0.0 -0.888 28.3 163.9-104.8 120.9 2.8 -3.9 6.4 16 114 A V - 0 0 5 36,-1.1 2,-0.2 -2,-0.6 55,-0.0 -0.971 41.2 -98.8-136.5 150.7 -0.9 -4.5 6.8 17 115 A P >> - 0 0 46 0, 0.0 4,-2.3 0, 0.0 3,-1.7 -0.476 30.2-123.9 -69.7 130.6 -3.2 -7.5 7.6 18 116 A Y H 3> S+ 0 0 157 1,-0.3 4,-0.9 -2,-0.2 35,-0.0 0.729 113.7 62.4 -45.0 -22.1 -4.7 -9.2 4.6 19 117 A R H 34 S+ 0 0 203 1,-0.2 4,-0.4 2,-0.2 -1,-0.3 0.912 107.5 38.2 -72.1 -44.2 -7.9 -8.5 6.4 20 118 A V H X> S+ 0 0 10 -3,-1.7 4,-2.4 2,-0.2 3,-0.9 0.814 101.7 78.5 -76.0 -31.7 -7.5 -4.7 6.3 21 119 A V H >X S+ 0 0 17 -4,-2.3 4,-1.9 1,-0.3 3,-1.0 0.921 91.2 48.3 -39.3 -74.9 -6.0 -4.8 2.7 22 120 A G H 3X S+ 0 0 51 -4,-0.9 4,-1.5 1,-0.3 -1,-0.3 0.789 113.5 52.0 -38.7 -34.3 -9.3 -5.2 0.9 23 121 A L H <4 S+ 0 0 77 -3,-0.9 -1,-0.3 -4,-0.4 -2,-0.2 0.913 113.2 42.0 -71.7 -44.2 -10.5 -2.3 3.0 24 122 A V H << S+ 0 0 0 -4,-2.4 8,-0.5 -3,-1.0 7,-0.2 0.989 115.3 46.8 -66.0 -62.0 -7.6 -0.1 2.2 25 123 A V H <>S- 0 0 29 -4,-1.9 7,-1.4 6,-0.2 5,-1.1 0.899 98.9-164.3 -46.8 -48.3 -7.4 -0.8 -1.6 26 124 A G T ><5 - 0 0 11 -4,-1.5 3,-2.2 -5,-0.4 2,-0.8 -0.086 44.8 -12.7 83.8 172.7 -11.1 -0.4 -1.9 27 125 A P T 3 5S- 0 0 108 0, 0.0 -4,-0.0 0, 0.0 -5,-0.0 -0.212 133.7 -37.7 -48.0 91.9 -13.6 -1.4 -4.6 28 126 A K T 3 5S- 0 0 212 -2,-0.8 -2,-0.1 1,-0.1 -6,-0.0 0.864 130.1 -36.6 53.1 38.6 -11.0 -2.2 -7.3 29 127 A G T < 5S+ 0 0 31 -3,-2.2 -3,-0.2 4,-0.0 -1,-0.1 0.980 97.9 130.3 78.3 72.9 -8.9 0.7 -6.1 30 128 A A S > S+ 0 0 53 -6,-1.1 3,-1.3 -7,-0.2 4,-1.1 0.829 113.8 55.2 -98.7 -44.8 -10.1 4.4 -1.6 32 130 A I H 3> S+ 0 0 7 -7,-1.4 4,-1.8 -8,-0.5 5,-0.2 0.767 99.8 65.6 -60.6 -25.2 -6.4 3.9 -1.9 33 131 A K H 3> S+ 0 0 119 -8,-0.3 4,-0.9 1,-0.2 -1,-0.3 0.826 96.4 55.6 -66.5 -32.0 -6.5 6.2 -4.9 34 132 A R H <> S+ 0 0 152 -3,-1.3 4,-3.1 -4,-0.2 3,-0.4 0.910 105.3 51.4 -67.3 -43.6 -7.5 9.1 -2.7 35 133 A I H X>S+ 0 0 13 -4,-1.1 4,-3.0 1,-0.2 5,-0.5 0.966 102.7 56.9 -57.9 -56.9 -4.5 8.6 -0.4 36 134 A Q H <>S+ 0 0 51 -4,-1.8 5,-1.6 1,-0.2 4,-0.4 0.800 115.6 41.3 -45.2 -32.0 -1.9 8.7 -3.3 37 135 A Q H <5S+ 0 0 108 -4,-0.9 -2,-0.2 -3,-0.4 -1,-0.2 0.945 112.7 48.7 -82.1 -55.7 -3.4 12.1 -4.1 38 136 A R H <5S+ 0 0 227 -4,-3.1 -2,-0.2 1,-0.3 -3,-0.2 0.759 128.2 30.4 -56.3 -24.4 -3.8 13.5 -0.6 39 137 A T T <5S- 0 0 17 -4,-3.0 -1,-0.3 -5,-0.3 -2,-0.2 0.525 100.9-136.7-109.7 -13.0 -0.2 12.4 -0.0 40 138 A H T < + 0 0 158 -5,-0.5 2,-0.3 -4,-0.4 -3,-0.2 0.943 58.1 130.9 54.3 52.8 1.0 12.8 -3.6 41 139 A T < - 0 0 14 -5,-1.6 2,-0.9 -6,-0.2 -1,-0.2 -0.817 65.9-106.0-130.0 170.0 2.9 9.5 -3.5 42 140 A Y E -B 57 0A 153 15,-2.0 15,-1.9 -2,-0.3 2,-0.5 -0.802 37.9-175.1-102.3 94.9 3.2 6.3 -5.6 43 141 A I E -B 56 0A 9 -2,-0.9 2,-0.5 13,-0.2 13,-0.2 -0.790 4.4-164.5 -93.9 125.8 1.3 3.5 -3.8 44 142 A V E -B 55 0A 68 11,-2.9 11,-2.1 -2,-0.5 -2,-0.0 -0.932 12.4-136.3-113.8 130.1 1.6 0.1 -5.3 45 143 A T - 0 0 71 -2,-0.5 9,-0.1 9,-0.2 -2,-0.0 -0.566 23.0-117.8 -84.1 145.3 -0.7 -2.8 -4.4 46 144 A P - 0 0 36 0, 0.0 -1,-0.1 0, 0.0 8,-0.1 -0.002 36.2 -87.5 -69.8-179.8 0.6 -6.3 -3.8 47 145 A G - 0 0 45 4,-0.2 3,-0.2 1,-0.1 0, 0.0 -0.041 30.0-112.2 -80.6-172.1 -0.3 -9.4 -5.8 48 146 A R S S+ 0 0 226 1,-0.2 -1,-0.1 4,-0.0 0, 0.0 0.769 115.5 36.9 -92.5 -31.6 -3.1 -11.9 -5.3 49 147 A D S S+ 0 0 152 2,-0.1 2,-0.3 0, 0.0 -1,-0.2 -0.146 107.5 84.8-112.1 36.0 -1.0 -14.8 -4.2 50 148 A K S S- 0 0 152 -3,-0.2 3,-0.0 1,-0.0 0, 0.0 -0.828 87.7 -76.2-131.3 169.9 1.5 -12.8 -2.2 51 149 A E - 0 0 147 -2,-0.3 2,-1.0 1,-0.1 -4,-0.2 -0.361 54.3-100.6 -67.8 144.3 1.9 -11.4 1.3 52 150 A P + 0 0 31 0, 0.0 -36,-1.1 0, 0.0 2,-0.3 -0.527 66.4 140.4 -69.7 99.3 -0.1 -8.2 2.1 53 151 A V E -A 15 0A 30 -2,-1.0 2,-0.3 -38,-0.2 -38,-0.2 -0.895 38.2-149.6-148.3 113.8 2.5 -5.4 1.8 54 152 A F E -A 14 0A 0 -40,-1.6 -40,-2.2 -2,-0.3 2,-0.5 -0.602 11.5-145.2 -84.1 141.5 1.9 -2.0 0.3 55 153 A A E -AB 13 44A 14 -11,-2.1 -11,-2.9 -2,-0.3 2,-0.5 -0.930 13.5-171.1-111.9 121.5 4.7 -0.2 -1.4 56 154 A V E -AB 12 43A 0 -44,-2.7 -44,-2.1 -2,-0.5 2,-0.5 -0.947 1.4-168.2-115.6 122.5 5.0 3.6 -1.2 57 155 A T E +AB 11 42A 44 -15,-1.9 -15,-2.0 -2,-0.5 2,-0.3 -0.935 40.0 77.6-112.9 122.9 7.5 5.6 -3.2 58 156 A G E S-A 10 0A 7 -48,-3.3 -48,-2.5 -2,-0.5 -17,-0.1 -0.983 76.9 -20.6 169.5-173.1 8.2 9.2 -2.5 59 157 A M > - 0 0 85 -2,-0.3 4,-2.1 -50,-0.2 5,-0.4 -0.029 64.1-107.6 -52.4 159.2 9.9 11.8 -0.3 60 158 A P T 4 S+ 0 0 82 0, 0.0 -1,-0.1 0, 0.0 -49,-0.0 0.477 122.3 42.5 -69.8 -0.9 11.0 10.7 3.2 61 159 A E T 4 S+ 0 0 130 3,-0.1 4,-0.3 2,-0.1 -2,-0.1 0.614 116.5 43.9-115.7 -26.0 8.2 12.9 4.5 62 160 A N T >> S+ 0 0 51 2,-0.2 4,-2.1 -3,-0.1 3,-1.1 0.931 110.8 50.1 -85.1 -54.6 5.4 12.0 2.0 63 161 A V H 3X S+ 0 0 1 -4,-2.1 4,-1.3 1,-0.3 -1,-0.1 0.822 113.6 49.4 -53.7 -32.5 5.8 8.2 1.9 64 162 A D H 3> S+ 0 0 72 -5,-0.4 4,-1.0 2,-0.2 -1,-0.3 0.730 107.0 55.6 -79.1 -23.5 5.7 8.2 5.7 65 163 A R H <> S+ 0 0 180 -3,-1.1 4,-1.1 -4,-0.3 -2,-0.2 0.861 107.4 47.7 -76.3 -37.5 2.6 10.4 5.7 66 164 A A H X S+ 0 0 0 -4,-2.1 4,-2.4 1,-0.2 -2,-0.2 0.874 103.8 61.5 -70.8 -38.5 0.6 8.0 3.5 67 165 A R H X S+ 0 0 111 -4,-1.3 4,-2.5 -5,-0.2 5,-0.3 0.901 100.2 55.1 -54.4 -44.2 1.6 5.0 5.6 68 166 A E H X S+ 0 0 110 -4,-1.0 4,-2.3 1,-0.2 -1,-0.2 0.930 108.9 46.7 -55.6 -49.3 -0.1 6.5 8.7 69 167 A E H X S+ 0 0 105 -4,-1.1 4,-1.5 2,-0.2 -1,-0.2 0.921 110.4 53.9 -59.9 -46.0 -3.4 6.8 6.8 70 168 A I H >X S+ 0 0 0 -4,-2.4 3,-0.8 1,-0.2 4,-0.6 0.961 114.5 38.5 -53.2 -59.0 -3.1 3.3 5.5 71 169 A E H >X S+ 0 0 73 -4,-2.5 3,-1.3 1,-0.2 4,-0.6 0.833 105.6 70.6 -62.4 -32.7 -2.6 1.7 8.9 72 170 A A H >X S+ 0 0 44 -4,-2.3 4,-1.9 -5,-0.3 3,-1.6 0.882 90.2 60.0 -51.5 -42.3 -5.2 4.2 10.3 73 171 A H H << S+ 0 0 52 -4,-1.5 -1,-0.3 -3,-0.8 -2,-0.2 0.834 88.0 74.7 -56.3 -33.5 -7.9 2.4 8.4 74 172 A I H << S+ 0 0 59 -3,-1.3 -1,-0.3 -4,-0.6 -2,-0.2 0.848 108.2 31.6 -48.0 -38.2 -7.0 -0.8 10.4 75 173 A T H << S+ 0 0 127 -3,-1.6 -1,-0.2 -4,-0.6 -2,-0.2 0.842 99.6 96.2 -88.8 -39.4 -8.7 0.9 13.4 76 174 A L S < S- 0 0 105 -4,-1.9 2,-0.6 1,-0.1 0, 0.0 -0.283 82.5-118.5 -55.3 130.6 -11.4 2.8 11.5 77 175 A R + 0 0 205 1,-0.1 2,-0.3 0, 0.0 -1,-0.1 -0.628 39.6 170.0 -77.4 118.0 -14.6 0.9 11.4 78 176 A S + 0 0 85 -2,-0.6 -1,-0.1 2,-0.1 -2,-0.0 -0.741 50.5 9.6-132.4 85.2 -15.6 0.1 7.8 79 177 A G S S- 0 0 60 -2,-0.3 0, 0.0 0, 0.0 0, 0.0 -0.705 92.0 -44.4 135.9 172.3 -18.5 -2.4 7.5 80 178 A P - 0 0 132 0, 0.0 -2,-0.1 0, 0.0 3,-0.0 -0.221 32.5-158.7 -69.8 161.6 -21.2 -4.2 9.5 81 179 A S + 0 0 122 2,-0.0 2,-0.1 0, 0.0 0, 0.0 0.759 61.5 99.2-108.7 -43.5 -20.6 -5.8 12.9 82 180 A S 0 0 114 1,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.265 360.0 360.0 -51.4 117.4 -23.4 -8.3 13.2 83 181 A G 0 0 123 -2,-0.1 -1,-0.1 -3,-0.0 -2,-0.0 -0.543 360.0 360.0 -71.4 360.0 -22.0 -11.6 12.2