==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 16-MAR-06 2DGV . COMPND 2 MOLECULE: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN M; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 92 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6246.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 63.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 19.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 13.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 17 18.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 644 A G 0 0 135 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 174.0 23.3 -4.7 3.4 2 645 A S - 0 0 104 2,-0.1 0, 0.0 3,-0.0 0, 0.0 -0.972 360.0-127.5-164.6 172.3 22.1 -1.1 3.6 3 646 A S + 0 0 125 -2,-0.3 3,-0.1 3,-0.0 2,-0.0 -0.227 69.7 107.3-125.2 42.4 21.7 1.9 5.9 4 647 A G S S- 0 0 44 1,-0.3 81,-0.1 81,-0.0 -2,-0.1 0.058 77.5 -16.7 -98.6-150.5 18.0 2.7 5.4 5 648 A S S S- 0 0 59 79,-0.8 2,-1.3 1,-0.1 -1,-0.3 -0.298 71.1-117.3 -56.2 129.3 15.0 2.3 7.7 6 649 A S S S+ 0 0 128 -3,-0.1 -1,-0.1 1,-0.1 -3,-0.0 -0.562 91.0 14.9 -73.4 95.8 15.8 -0.1 10.5 7 650 A G S S- 0 0 39 -2,-1.3 2,-1.3 1,-0.1 3,-0.3 0.577 74.9-128.2 104.9 105.9 13.4 -3.0 9.9 8 651 A A + 0 0 10 1,-0.2 54,-0.7 50,-0.1 53,-0.1 -0.667 52.6 139.9 -85.8 90.4 11.5 -3.5 6.6 9 652 A C + 0 0 31 -2,-1.3 46,-1.1 52,-0.2 2,-0.2 0.724 55.7 67.6-100.2 -29.9 7.9 -3.9 7.8 10 653 A Q E -A 54 0A 34 -3,-0.3 73,-1.4 73,-0.3 2,-0.2 -0.614 63.4-174.1 -93.2 153.2 6.2 -1.9 5.0 11 654 A I E -AB 53 82A 0 42,-1.5 42,-0.9 71,-0.2 2,-0.3 -0.803 16.3-125.2-136.5 177.7 6.0 -2.9 1.3 12 655 A F E -AB 52 81A 36 69,-2.5 69,-1.5 -2,-0.2 2,-0.3 -0.953 16.7-165.5-130.6 149.6 4.9 -1.7 -2.1 13 656 A V E +A 51 0A 0 38,-2.3 38,-0.6 -2,-0.3 2,-0.3 -0.960 6.7 178.2-134.6 151.9 2.6 -3.0 -4.7 14 657 A R + 0 0 92 -2,-0.3 65,-0.9 36,-0.2 36,-0.2 -0.967 56.2 41.7-148.4 162.0 1.9 -2.2 -8.4 15 658 A N S S+ 0 0 82 33,-0.3 58,-0.2 -2,-0.3 35,-0.2 0.936 72.3 167.9 65.3 48.0 -0.2 -3.4 -11.3 16 659 A L - 0 0 1 33,-2.0 -1,-0.2 -3,-0.1 61,-0.1 -0.730 45.3 -87.1 -97.0 143.6 -3.4 -3.8 -9.2 17 660 A P > - 0 0 16 0, 0.0 3,-1.3 0, 0.0 32,-0.1 -0.172 33.6-124.8 -47.9 127.8 -6.9 -4.4 -10.6 18 661 A F T 3 S+ 0 0 112 1,-0.3 29,-0.1 30,-0.1 31,-0.1 0.795 117.1 46.2 -45.5 -31.0 -8.6 -1.1 -11.3 19 662 A D T 3 S+ 0 0 138 2,-0.1 -1,-0.3 30,-0.0 -3,-0.0 0.768 83.7 120.2 -83.8 -28.4 -11.3 -2.4 -9.1 20 663 A F < - 0 0 14 -3,-1.3 2,-0.2 1,-0.1 29,-0.1 -0.087 49.7-161.9 -40.6 123.1 -8.9 -3.6 -6.4 21 664 A T > - 0 0 69 1,-0.1 4,-2.0 18,-0.0 5,-0.1 -0.503 29.3-107.4-106.0 176.8 -9.8 -1.8 -3.2 22 665 A W H > S+ 0 0 112 2,-0.2 4,-2.5 1,-0.2 5,-0.1 0.948 115.4 56.0 -69.0 -50.7 -8.0 -1.1 0.0 23 666 A K H > S+ 0 0 118 1,-0.2 4,-1.8 2,-0.2 5,-0.3 0.912 112.6 42.8 -47.3 -50.7 -10.1 -3.6 2.1 24 667 A M H > S+ 0 0 91 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.927 109.2 57.5 -63.4 -46.5 -9.2 -6.4 -0.3 25 668 A L H X S+ 0 0 0 -4,-2.0 4,-1.3 2,-0.2 -1,-0.2 0.885 111.1 45.0 -51.5 -42.5 -5.6 -5.3 -0.5 26 669 A K H >X S+ 0 0 46 -4,-2.5 3,-2.1 2,-0.2 4,-1.7 0.999 114.6 42.0 -65.2 -74.1 -5.3 -5.7 3.3 27 670 A D H 3X S+ 0 0 94 -4,-1.8 4,-0.6 1,-0.3 -1,-0.2 0.742 111.3 63.8 -46.0 -23.7 -7.0 -9.0 3.9 28 671 A K H 3< S+ 0 0 75 -4,-2.1 3,-0.4 -5,-0.3 -1,-0.3 0.890 109.7 34.5 -69.9 -40.4 -5.1 -10.1 0.8 29 672 A F H XX S+ 0 0 2 -3,-2.1 3,-1.2 -4,-1.3 4,-1.1 0.543 97.3 87.4 -90.1 -9.3 -1.7 -9.6 2.5 30 673 A N H 3< S+ 0 0 45 -4,-1.7 -1,-0.2 1,-0.3 -2,-0.2 0.846 70.6 76.4 -57.6 -35.0 -3.1 -10.7 5.8 31 674 A E T 3< S+ 0 0 166 -4,-0.6 -1,-0.3 -3,-0.4 -2,-0.1 0.869 99.6 43.3 -43.2 -44.8 -2.4 -14.3 4.9 32 675 A C T <4 S- 0 0 34 -3,-1.2 -1,-0.2 -4,-0.1 -2,-0.2 0.992 131.1 -43.1 -67.0 -63.9 1.3 -13.6 5.6 33 676 A G S < S- 0 0 21 -4,-1.1 2,-0.9 28,-0.0 -1,-0.1 -0.620 82.8 -45.2-145.8-155.1 0.9 -11.6 8.9 34 677 A H - 0 0 104 -2,-0.2 22,-0.6 -3,-0.1 2,-0.3 -0.779 53.5-151.6 -93.1 102.8 -1.2 -9.0 10.6 35 678 A V E +C 55 0A 1 -2,-0.9 20,-0.2 20,-0.2 3,-0.1 -0.555 23.2 168.1 -75.9 132.9 -1.6 -6.0 8.2 36 679 A L E + 0 0 83 18,-2.9 2,-0.5 1,-0.3 -1,-0.2 0.805 63.1 40.1-107.3 -61.5 -2.1 -2.6 9.9 37 680 A Y E + 0 0 97 17,-0.4 17,-2.4 -11,-0.0 -1,-0.3 -0.815 65.3 156.7 -97.9 129.6 -1.8 0.1 7.2 38 681 A A E +C 53 0A 14 -2,-0.5 2,-0.3 15,-0.2 15,-0.2 -0.909 4.9 144.8-155.5 123.1 -3.4 -0.5 3.8 39 682 A D E -C 52 0A 80 13,-1.0 13,-1.3 -2,-0.3 2,-0.5 -0.964 40.3-118.2-152.2 165.5 -4.5 2.0 1.2 40 683 A I E -C 51 0A 18 -2,-0.3 11,-0.2 11,-0.2 -18,-0.1 -0.942 29.4-127.0-115.8 117.2 -4.8 2.4 -2.6 41 684 A K E - 0 0 73 9,-2.0 7,-1.7 -2,-0.5 8,-0.5 -0.311 34.1-178.8 -60.1 137.6 -2.9 5.2 -4.2 42 685 A M E -C 47 0A 107 5,-0.2 2,-0.4 6,-0.1 5,-0.2 -0.962 20.9-148.9-139.7 156.2 -5.1 7.5 -6.4 43 686 A E S S- 0 0 105 3,-2.2 -2,-0.0 -2,-0.3 0, 0.0 -0.955 79.2 -26.7-131.9 114.4 -4.6 10.5 -8.7 44 687 A N S S- 0 0 168 -2,-0.4 -1,-0.1 1,-0.2 3,-0.1 0.843 130.6 -44.9 53.1 35.4 -7.4 13.1 -9.1 45 688 A G S S+ 0 0 66 1,-0.2 2,-0.4 0, 0.0 -1,-0.2 0.856 115.0 120.6 78.2 36.4 -9.9 10.4 -8.3 46 689 A K - 0 0 132 0, 0.0 -3,-2.2 0, 0.0 -1,-0.2 -0.966 64.5-120.7-138.0 119.7 -8.3 7.7 -10.6 47 690 A S E - C 0 42A 30 -2,-0.4 -5,-0.2 -5,-0.2 -29,-0.1 -0.272 18.7-168.6 -57.3 136.9 -6.9 4.4 -9.4 48 691 A K E - 0 0 119 -7,-1.7 -33,-0.3 2,-0.2 -1,-0.1 0.572 36.2-123.5-102.7 -15.0 -3.2 3.9 -10.1 49 692 A G E S+ 0 0 8 -8,-0.5 -33,-2.0 1,-0.2 2,-0.4 0.627 77.3 109.6 80.9 13.4 -3.1 0.2 -9.3 50 693 A C E + 0 0 26 -9,-0.4 -9,-2.0 -36,-0.2 -2,-0.2 -0.983 37.2 153.4-126.8 131.9 -0.4 0.8 -6.7 51 694 A G E -AC 13 40A 0 -38,-0.6 -38,-2.3 -2,-0.4 2,-0.3 -0.727 29.5-121.7-139.7-170.9 -0.7 0.5 -3.0 52 695 A V E -AC 12 39A 2 -13,-1.3 -13,-1.0 -40,-0.2 2,-0.4 -0.976 10.3-160.1-141.1 153.5 1.2 -0.2 0.3 53 696 A V E -AC 11 38A 0 -42,-0.9 -42,-1.5 -2,-0.3 2,-0.4 -0.978 5.6-162.1-139.6 124.3 0.9 -2.7 3.1 54 697 A K E -A 10 0A 82 -17,-2.4 -18,-2.9 -2,-0.4 -17,-0.4 -0.858 8.8-164.6-107.6 139.7 2.4 -2.4 6.6 55 698 A F E - C 0 35A 2 -46,-1.1 -20,-0.2 -2,-0.4 -46,-0.1 -0.661 29.8-117.8-115.6 172.3 3.0 -5.3 9.0 56 699 A E S S+ 0 0 119 -22,-0.6 -1,-0.1 -2,-0.2 -21,-0.1 0.906 99.2 42.6 -75.5 -44.1 3.7 -5.6 12.8 57 700 A S S > S- 0 0 47 -48,-0.1 4,-1.1 1,-0.1 -2,-0.1 -0.801 73.3-138.2-107.4 147.7 7.0 -7.3 12.3 58 701 A P H > S+ 0 0 56 0, 0.0 4,-1.5 0, 0.0 -1,-0.1 0.825 103.0 59.4 -69.8 -33.0 9.8 -6.4 9.8 59 702 A E H > S+ 0 0 135 1,-0.2 4,-1.0 2,-0.2 -50,-0.0 0.905 99.1 58.2 -63.1 -42.9 10.5 -10.1 9.1 60 703 A V H >> S+ 0 0 29 1,-0.2 4,-2.4 2,-0.2 3,-2.0 0.958 102.5 52.0 -51.1 -60.2 6.9 -10.6 7.9 61 704 A A H 3X S+ 0 0 0 -4,-1.1 4,-2.4 1,-0.3 -1,-0.2 0.917 102.6 58.1 -42.1 -59.4 7.1 -8.0 5.2 62 705 A E H 3X S+ 0 0 111 -4,-1.5 4,-0.8 -54,-0.7 -1,-0.3 0.792 114.1 42.0 -43.5 -31.2 10.3 -9.4 3.7 63 706 A R H XX S+ 0 0 155 -3,-2.0 4,-2.7 -4,-1.0 3,-0.5 0.952 106.6 56.1 -82.0 -58.1 8.2 -12.6 3.3 64 707 A A H 3X S+ 0 0 0 -4,-2.4 4,-1.9 1,-0.2 5,-0.2 0.785 100.9 66.9 -44.9 -30.1 4.9 -11.2 2.1 65 708 A C H 3X S+ 0 0 6 -4,-2.4 4,-2.0 -5,-0.3 3,-0.3 0.982 110.3 29.1 -56.4 -64.0 7.0 -9.6 -0.7 66 709 A R H << S+ 0 0 183 -4,-0.8 -2,-0.2 -3,-0.5 -1,-0.2 0.895 116.9 60.6 -65.1 -41.3 8.0 -12.9 -2.4 67 710 A M H < S+ 0 0 102 -4,-2.7 -1,-0.2 1,-0.2 -2,-0.2 0.833 122.1 25.1 -55.3 -33.6 4.8 -14.6 -1.3 68 711 A M H >< S+ 0 0 17 -4,-1.9 3,-2.6 -3,-0.3 2,-0.3 0.554 92.3 122.3-105.8 -14.5 2.9 -12.0 -3.3 69 712 A N T 3< S+ 0 0 84 -4,-2.0 10,-0.2 1,-0.3 3,-0.1 -0.320 91.9 3.5 -54.2 109.7 5.8 -11.2 -5.7 70 713 A G T 3 S+ 0 0 34 8,-1.8 2,-1.1 -2,-0.3 -1,-0.3 0.738 85.6 171.3 83.6 24.1 4.2 -11.9 -9.1 71 714 A M < - 0 0 41 -3,-2.6 2,-0.5 7,-0.3 7,-0.5 -0.559 36.5-129.0 -72.2 98.9 0.8 -12.7 -7.7 72 715 A K - 0 0 127 -2,-1.1 2,-0.6 5,-0.2 5,-0.3 -0.289 30.0-166.4 -51.9 101.1 -1.4 -12.9 -10.8 73 716 A L B > -D 76 0B 11 3,-3.0 3,-1.3 -2,-0.5 -1,-0.1 -0.853 65.4 -31.4 -99.8 120.0 -4.2 -10.6 -9.9 74 717 A S T 3 S- 0 0 107 -2,-0.6 -1,-0.2 1,-0.3 3,-0.1 0.852 129.7 -43.7 40.3 43.7 -7.3 -10.8 -12.1 75 718 A G T 3 S+ 0 0 66 -3,-0.2 2,-0.4 1,-0.2 -1,-0.3 0.775 123.4 109.3 75.6 26.5 -5.0 -11.7 -14.9 76 719 A R B < -D 73 0B 105 -3,-1.3 -3,-3.0 -5,-0.1 2,-0.3 -0.917 64.3-137.1-140.2 111.0 -2.5 -9.0 -13.9 77 720 A E - 0 0 114 -2,-0.4 2,-0.3 -5,-0.3 -5,-0.2 -0.477 22.9-148.9 -68.2 127.8 0.9 -9.8 -12.4 78 721 A I - 0 0 4 -7,-0.5 -8,-1.8 -2,-0.3 2,-0.8 -0.702 8.4-131.9 -99.7 151.4 1.8 -7.5 -9.5 79 722 A D - 0 0 63 -65,-0.9 2,-0.4 -2,-0.3 -10,-0.1 -0.849 27.1-175.1-106.1 99.9 5.2 -6.3 -8.5 80 723 A V + 0 0 0 -2,-0.8 2,-0.3 -15,-0.2 -67,-0.2 -0.788 15.0 148.1 -97.5 135.8 5.7 -6.7 -4.7 81 724 A R E -B 12 0A 127 -69,-1.5 -69,-2.5 -2,-0.4 2,-0.3 -0.980 48.5 -86.1-158.2 164.0 8.9 -5.5 -3.0 82 725 A I E -B 11 0A 35 -2,-0.3 2,-0.7 -71,-0.2 -71,-0.2 -0.589 38.8-130.0 -79.3 134.9 10.2 -4.1 0.2 83 726 A D + 0 0 35 -73,-1.4 3,-0.3 -2,-0.3 -73,-0.3 -0.760 27.9 174.2 -89.1 116.9 10.0 -0.3 0.7 84 727 A R S S+ 0 0 116 -2,-0.7 -79,-0.8 1,-0.2 2,-0.5 0.706 77.5 51.8 -91.4 -24.2 13.3 1.2 1.8 85 728 A N + 0 0 144 1,-0.1 -1,-0.2 -81,-0.1 -2,-0.0 -0.622 62.2 131.1-114.4 71.4 12.1 4.8 1.5 86 729 A A + 0 0 36 -2,-0.5 2,-0.9 -3,-0.3 -1,-0.1 0.032 34.2 119.2-108.0 24.5 8.9 4.8 3.5 87 730 A S S S- 0 0 112 -3,-0.1 -3,-0.0 2,-0.1 -82,-0.0 -0.805 79.5 -26.0 -96.2 104.0 9.8 7.9 5.5 88 731 A G S S- 0 0 57 -2,-0.9 2,-0.1 2,-0.1 -3,-0.0 -0.182 103.7 -29.6 86.5 177.3 7.2 10.7 4.9 89 732 A P - 0 0 134 0, 0.0 2,-0.7 0, 0.0 -2,-0.1 -0.386 50.4-145.5 -69.7 144.2 4.9 11.3 1.9 90 733 A S + 0 0 112 -2,-0.1 2,-0.3 -4,-0.1 -2,-0.1 -0.777 54.9 103.3-115.2 86.4 6.1 10.2 -1.6 91 734 A S 0 0 105 -2,-0.7 0, 0.0 1,-0.1 0, 0.0 -0.903 360.0 360.0-165.1 132.8 4.8 12.7 -4.1 92 735 A G 0 0 127 -2,-0.3 -1,-0.1 0, 0.0 0, 0.0 0.946 360.0 360.0 -52.8 360.0 6.3 15.6 -6.1