==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 16-MAR-06 2DGX . COMPND 2 MOLECULE: KIAA0430 PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 96 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6527.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 64 66.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 22.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 22 22.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 546 A G 0 0 140 0, 0.0 2,-0.8 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 39.6 -12.0 1.8 21.1 2 547 A S + 0 0 126 0, 0.0 2,-0.5 0, 0.0 0, 0.0 -0.817 360.0 174.0 -96.4 108.1 -10.5 2.3 17.6 3 548 A S - 0 0 103 -2,-0.8 3,-0.1 3,-0.0 0, 0.0 -0.952 30.7-120.9-118.8 117.3 -12.5 4.8 15.5 4 549 A G - 0 0 57 -2,-0.5 7,-0.0 1,-0.1 -1,-0.0 -0.018 49.0 -72.8 -49.3 156.3 -11.3 5.8 12.1 5 550 A S - 0 0 50 1,-0.1 2,-0.3 2,-0.0 -1,-0.1 0.011 49.6-163.2 -48.1 158.6 -10.6 9.5 11.6 6 551 A S + 0 0 96 2,-0.2 2,-0.3 -3,-0.1 86,-0.1 -0.851 62.1 2.7-154.6 112.8 -13.6 11.8 11.2 7 552 A G S S+ 0 0 45 84,-0.4 2,-0.3 -2,-0.3 -2,-0.0 -0.459 121.5 34.0 113.4 -60.1 -13.7 15.3 9.8 8 553 A N S S+ 0 0 132 -2,-0.3 -2,-0.2 2,-0.0 2,-0.2 -0.894 84.2 55.9-129.2 159.2 -10.1 15.8 8.7 9 554 A G - 0 0 26 -2,-0.3 2,-0.4 51,-0.1 51,-0.1 -0.509 69.5 -90.1 113.7 176.4 -7.4 13.6 7.2 10 555 A A E -A 59 0A 1 49,-1.0 49,-2.4 -2,-0.2 2,-0.6 -0.990 25.1-164.6-135.9 127.2 -6.9 11.3 4.3 11 556 A D E -A 58 0A 44 -2,-0.4 76,-1.1 76,-0.4 2,-0.7 -0.938 4.6-163.3-115.0 115.7 -7.6 7.6 4.1 12 557 A V E -AB 57 86A 0 45,-1.8 45,-2.7 -2,-0.6 2,-0.5 -0.854 11.9-147.3-101.4 108.6 -6.2 5.6 1.2 13 558 A Q E -AB 56 85A 78 72,-2.9 72,-1.3 -2,-0.7 2,-0.5 -0.625 15.8-164.8 -77.3 118.9 -7.9 2.2 0.7 14 559 A V E +AB 55 84A 0 41,-3.2 41,-2.2 -2,-0.5 2,-0.3 -0.902 12.5 170.1-109.6 131.6 -5.4 -0.4 -0.6 15 560 A S E + B 0 83A 39 68,-1.8 68,-3.0 -2,-0.5 39,-0.1 -0.867 51.7 42.9-133.8 167.1 -6.5 -3.7 -2.1 16 561 A N S S+ 0 0 70 -2,-0.3 2,-0.4 66,-0.2 -1,-0.2 0.880 71.7 173.0 64.9 39.0 -4.9 -6.6 -4.0 17 562 A I - 0 0 0 36,-1.3 2,-1.0 -3,-0.2 36,-0.4 -0.679 42.9-108.9 -84.1 128.2 -1.9 -6.6 -1.7 18 563 A D > - 0 0 3 -2,-0.4 3,-1.3 62,-0.3 -1,-0.1 -0.363 32.2-170.0 -57.6 96.5 0.6 -9.5 -2.2 19 564 A Y T 3 S+ 0 0 100 -2,-1.0 -1,-0.2 1,-0.3 7,-0.1 0.832 76.8 78.4 -59.0 -32.9 -0.1 -11.4 1.0 20 565 A R T 3 S+ 0 0 177 -3,-0.1 -1,-0.3 2,-0.0 2,-0.1 0.854 83.0 77.8 -43.7 -41.5 2.9 -13.6 0.2 21 566 A L S < S- 0 0 48 -3,-1.3 5,-0.1 1,-0.1 -4,-0.0 -0.444 97.0-100.9 -73.7 145.3 5.0 -10.7 1.5 22 567 A S > - 0 0 85 -2,-0.1 4,-1.3 1,-0.1 5,-0.2 -0.215 25.6-117.7 -63.1 154.9 5.4 -10.3 5.2 23 568 A R H > S+ 0 0 165 1,-0.2 4,-2.3 2,-0.2 5,-0.2 0.834 117.7 50.1 -62.9 -32.8 3.3 -7.6 7.0 24 569 A K H > S+ 0 0 160 1,-0.2 4,-0.6 2,-0.2 -1,-0.2 0.815 109.4 50.4 -75.1 -31.6 6.5 -5.8 8.0 25 570 A E H > S+ 0 0 79 2,-0.1 4,-0.8 3,-0.1 -2,-0.2 0.699 117.8 40.9 -78.5 -20.3 7.9 -6.0 4.5 26 571 A L H X S+ 0 0 0 -4,-1.3 4,-3.1 2,-0.2 5,-0.4 0.925 107.7 54.0 -90.1 -61.9 4.6 -4.5 3.1 27 572 A Q H X S+ 0 0 61 -4,-2.3 4,-0.9 1,-0.3 -3,-0.1 0.748 116.0 46.6 -45.4 -24.8 3.7 -1.8 5.7 28 573 A Q H X S+ 0 0 73 -4,-0.6 4,-1.5 -5,-0.2 -1,-0.3 0.879 113.2 44.9 -85.9 -43.8 7.2 -0.5 5.0 29 574 A L H X S+ 0 0 41 -4,-0.8 4,-2.2 -3,-0.3 -2,-0.2 0.933 114.0 49.5 -66.0 -47.3 7.1 -0.7 1.2 30 575 A L H X S+ 0 0 0 -4,-3.1 4,-2.2 1,-0.2 5,-0.3 0.942 110.5 49.5 -57.2 -51.1 3.6 0.8 0.9 31 576 A Q H X S+ 0 0 86 -4,-0.9 4,-1.8 -5,-0.4 -1,-0.2 0.840 108.6 56.3 -57.9 -34.3 4.6 3.7 3.2 32 577 A E H X S+ 0 0 117 -4,-1.5 4,-1.7 2,-0.2 -1,-0.2 0.965 108.6 44.0 -62.9 -54.5 7.7 4.3 1.1 33 578 A A H >X S+ 0 0 3 -4,-2.2 3,-0.9 1,-0.2 4,-0.8 0.967 115.3 46.8 -54.9 -59.4 5.8 4.7 -2.2 34 579 A F H >X S+ 0 0 0 -4,-2.2 4,-2.3 1,-0.3 3,-1.0 0.850 108.4 58.8 -52.3 -36.6 3.1 7.0 -0.8 35 580 A A H 3< S+ 0 0 45 -4,-1.8 -1,-0.3 -5,-0.3 -2,-0.2 0.881 93.9 63.8 -61.4 -39.6 5.9 8.9 0.9 36 581 A R H << S+ 0 0 203 -4,-1.7 -1,-0.3 -3,-0.9 -2,-0.2 0.783 111.8 38.7 -55.8 -27.3 7.5 9.6 -2.5 37 582 A H H << S- 0 0 89 -3,-1.0 -2,-0.2 -4,-0.8 -1,-0.2 0.938 133.6 -35.6 -87.4 -62.4 4.3 11.6 -3.3 38 583 A G S < S- 0 0 22 -4,-2.3 2,-0.5 26,-0.1 21,-0.0 -0.105 89.0 -45.3-131.8-129.9 3.5 13.3 -0.0 39 584 A K - 0 0 133 22,-0.1 21,-2.6 -2,-0.1 2,-0.3 -0.940 47.2-137.7-122.6 110.6 3.7 12.6 3.7 40 585 A V E -C 59 0A 15 -2,-0.5 19,-0.3 -9,-0.2 3,-0.1 -0.489 17.3-173.6 -67.7 122.9 2.6 9.2 4.9 41 586 A K E - 0 0 95 17,-2.6 2,-0.3 -2,-0.3 18,-0.2 0.956 60.9 -26.4 -80.9 -58.0 0.5 9.6 8.1 42 587 A S E -C 58 0A 53 16,-1.4 16,-2.4 2,-0.0 2,-0.4 -0.975 50.0-134.6-154.7 164.2 0.0 6.0 9.1 43 588 A V E -C 57 0A 30 -2,-0.3 2,-0.3 14,-0.2 14,-0.2 -0.954 21.2-175.8-131.5 114.4 -0.2 2.4 7.7 44 589 A E E -C 56 0A 122 12,-2.2 12,-2.0 -2,-0.4 2,-0.3 -0.834 8.7-153.9-110.1 147.1 -2.9 -0.0 8.8 45 590 A L E -C 55 0A 42 -2,-0.3 10,-0.3 10,-0.2 -2,-0.0 -0.905 18.8-115.1-120.5 148.5 -3.2 -3.7 7.7 46 591 A S - 0 0 21 8,-2.5 7,-0.0 -2,-0.3 9,-0.0 -0.446 22.1-121.8 -79.7 152.6 -6.3 -5.9 7.5 47 592 A P S S+ 0 0 117 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 0.535 79.3 115.4 -69.8 -5.4 -6.7 -9.0 9.7 48 593 A H - 0 0 76 4,-0.2 -2,-0.1 1,-0.1 5,-0.0 -0.467 48.0-169.2 -69.8 134.2 -7.0 -11.0 6.5 49 594 A T + 0 0 113 -2,-0.2 2,-0.2 4,-0.1 -1,-0.1 -0.166 61.7 62.5-116.3 37.7 -4.2 -13.5 6.0 50 595 A D S > S- 0 0 83 0, 0.0 3,-0.8 0, 0.0 -2,-0.0 -0.849 110.2 -62.7-147.0-178.4 -4.9 -14.5 2.4 51 596 A Y T 3 S+ 0 0 164 1,-0.3 2,-0.3 -2,-0.2 -35,-0.2 0.745 125.6 71.3 -42.3 -24.8 -5.1 -13.1 -1.1 52 597 A Q T 3 + 0 0 115 -36,-0.1 2,-0.8 -37,-0.1 -1,-0.3 -0.112 69.0 140.7 -86.8 37.8 -7.9 -11.0 0.4 53 598 A L < + 0 0 7 -3,-0.8 -36,-1.3 -36,-0.4 2,-0.2 -0.740 25.7 173.3 -87.2 110.4 -5.3 -9.0 2.3 54 599 A K - 0 0 70 -2,-0.8 -8,-2.5 -38,-0.1 2,-0.3 -0.461 7.9-176.9-106.9-179.1 -6.3 -5.3 2.3 55 600 A A E -AC 14 45A 1 -41,-2.2 -41,-3.2 -10,-0.3 2,-0.4 -0.980 22.1-128.2-168.9 168.3 -4.9 -2.2 4.1 56 601 A V E -AC 13 44A 40 -12,-2.0 -12,-2.2 -2,-0.3 2,-0.8 -0.933 13.6-158.6-135.8 111.6 -5.4 1.5 4.6 57 602 A V E -AC 12 43A 0 -45,-2.7 -45,-1.8 -2,-0.4 2,-0.3 -0.792 14.7-149.0 -92.6 109.6 -2.6 4.0 4.1 58 603 A Q E -AC 11 42A 27 -16,-2.4 -17,-2.6 -2,-0.8 -16,-1.4 -0.600 11.8-158.8 -79.8 133.7 -3.3 7.3 6.0 59 604 A M E -AC 10 40A 0 -49,-2.4 -49,-1.0 -2,-0.3 -19,-0.2 -0.897 19.1-139.4-115.8 144.1 -2.0 10.5 4.5 60 605 A E S S+ 0 0 108 -21,-2.6 2,-0.3 -2,-0.4 -1,-0.1 0.970 90.8 40.5 -62.1 -56.3 -1.3 13.8 6.2 61 606 A N S > S- 0 0 78 -22,-0.3 4,-0.7 1,-0.1 -22,-0.1 -0.679 74.7-139.0 -96.6 150.3 -2.6 16.0 3.4 62 607 A L H >> S+ 0 0 82 -2,-0.3 3,-1.7 2,-0.2 4,-1.6 0.980 102.3 47.6 -69.3 -59.1 -5.8 15.2 1.3 63 608 A Q H 3> S+ 0 0 142 1,-0.3 4,-1.5 2,-0.2 5,-0.4 0.914 102.1 64.9 -47.9 -50.7 -4.5 16.2 -2.1 64 609 A D H 3> S+ 0 0 49 1,-0.3 4,-1.7 2,-0.2 -1,-0.3 0.825 105.2 47.2 -42.5 -37.3 -1.3 14.2 -1.5 65 610 A A H < S+ 0 0 16 -4,-2.6 3,-2.2 -5,-0.3 -2,-0.2 0.590 87.3 134.5 -67.9 -8.7 0.4 4.2 -7.1 73 618 A H T 3< S+ 0 0 88 -4,-1.3 10,-0.2 1,-0.3 3,-0.2 -0.164 82.5 0.3 -45.6 123.8 -2.6 2.7 -8.8 74 619 A R T 3 S- 0 0 160 8,-1.7 2,-0.5 1,-0.2 -1,-0.3 0.838 90.7-171.4 61.2 33.5 -1.7 -0.9 -9.8 75 620 A Y E < -D 82 0B 74 -3,-2.2 2,-1.5 7,-1.0 7,-1.4 -0.431 30.8-117.7 -62.1 112.3 1.8 -0.3 -8.3 76 621 A K E +D 81 0B 112 -2,-0.5 2,-0.3 5,-0.2 5,-0.2 -0.291 55.2 163.6 -54.2 87.4 3.8 -3.4 -9.3 77 622 A I E > -D 80 0B 5 -2,-1.5 3,-2.1 3,-1.1 -51,-0.0 -0.775 51.3 -36.8-111.3 156.5 4.5 -4.6 -5.8 78 623 A G T 3 S- 0 0 43 -2,-0.3 3,-0.0 1,-0.3 -59,-0.0 -0.006 118.9 -36.7 34.4-115.0 5.7 -7.9 -4.5 79 624 A S T 3 S+ 0 0 68 1,-0.0 2,-0.3 2,-0.0 -1,-0.3 0.145 129.3 56.0-121.5 15.6 4.0 -10.5 -6.8 80 625 A K E < S-D 77 0B 58 -3,-2.1 -3,-1.1 -5,-0.1 2,-0.5 -0.993 82.8-109.6-148.0 151.4 0.7 -8.6 -7.2 81 626 A K E -D 76 0B 96 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.719 32.4-138.1 -85.9 122.3 -0.5 -5.2 -8.4 82 627 A I E -D 75 0B 1 -7,-1.4 -8,-1.7 -2,-0.5 -7,-1.0 -0.625 8.9-144.0 -82.2 134.4 -1.9 -3.1 -5.5 83 628 A L E -B 15 0A 45 -68,-3.0 -68,-1.8 -2,-0.3 2,-0.2 -0.869 14.3-157.5-103.3 110.2 -5.1 -1.1 -6.2 84 629 A V E +B 14 0A 1 -2,-0.7 2,-0.3 -15,-0.3 -70,-0.2 -0.599 18.3 165.8 -86.5 146.0 -5.2 2.3 -4.6 85 630 A S E -B 13 0A 61 -72,-1.3 -72,-2.9 -2,-0.2 -19,-0.0 -0.910 32.5-118.0-162.6 131.0 -8.5 4.0 -3.9 86 631 A L E -B 12 0A 77 -2,-0.3 2,-0.3 -74,-0.2 -74,-0.2 -0.109 29.1-134.3 -63.3 165.9 -9.5 7.0 -1.7 87 632 A A - 0 0 37 -76,-1.1 2,-0.4 0, 0.0 -76,-0.4 -0.938 13.3-162.9-127.5 149.7 -12.0 6.6 1.1 88 633 A T - 0 0 142 -2,-0.3 4,-0.1 -78,-0.1 -78,-0.0 -0.996 4.8-168.2-135.5 132.0 -15.0 8.6 2.2 89 634 A G - 0 0 74 -2,-0.4 3,-0.1 2,-0.2 -83,-0.1 0.165 42.6 -81.4 -93.6-147.2 -16.9 8.6 5.5 90 635 A A S S+ 0 0 112 1,-0.2 2,-0.5 2,-0.1 -84,-0.0 0.939 110.4 47.1 -86.4 -60.0 -20.2 10.1 6.6 91 636 A S S S- 0 0 81 1,-0.1 -84,-0.4 2,-0.0 -2,-0.2 -0.739 80.6-143.2 -89.5 127.6 -19.4 13.7 7.3 92 637 A G - 0 0 45 -2,-0.5 -1,-0.1 -3,-0.1 -2,-0.1 -0.021 36.2 -86.0 -76.8-174.5 -17.3 15.5 4.6 93 638 A P - 0 0 107 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 0.587 49.2-142.1 -69.7 -9.8 -14.6 18.1 5.1 94 639 A S + 0 0 119 1,-0.2 2,-0.6 2,-0.0 -3,-0.0 0.891 40.4 163.9 46.6 46.3 -17.4 20.8 5.1 95 640 A S 0 0 110 1,-0.0 -1,-0.2 0, 0.0 -3,-0.0 -0.849 360.0 360.0-100.0 123.2 -15.1 23.1 3.2 96 641 A G 0 0 129 -2,-0.6 -1,-0.0 -3,-0.1 -2,-0.0 -0.622 360.0 360.0-124.5 360.0 -16.6 26.1 1.5