==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 16-MAR-06 2DGZ . COMPND 2 MOLECULE: WERNER SYNDROME PROTEIN VARIANT; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 113 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7954.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 71 62.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 16 14.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 47 41.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1133 A G 0 0 139 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-171.6 37.3 -20.2 3.5 2 1134 A S - 0 0 120 0, 0.0 2,-0.4 0, 0.0 0, 0.0 -0.867 360.0-139.5-136.3 169.4 35.9 -17.0 1.9 3 1135 A S - 0 0 121 -2,-0.3 0, 0.0 0, 0.0 0, 0.0 -0.918 17.4-156.1-137.9 109.7 36.1 -13.2 2.2 4 1136 A G - 0 0 77 -2,-0.4 2,-0.3 1,-0.1 0, 0.0 -0.007 10.5-155.6 -72.2-177.2 33.1 -11.0 1.9 5 1137 A S - 0 0 128 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.917 13.1-107.4-152.0 175.7 33.0 -7.3 0.9 6 1138 A S - 0 0 119 -2,-0.3 2,-0.1 1,-0.0 0, 0.0 -0.734 25.7-137.3-110.9 160.4 31.1 -4.1 1.2 7 1139 A G - 0 0 64 -2,-0.3 -1,-0.0 1,-0.2 0, 0.0 -0.452 29.1 -82.6-107.7-177.6 29.0 -2.2 -1.3 8 1140 A S - 0 0 130 -2,-0.1 2,-0.4 1,-0.0 -1,-0.2 -0.100 36.5-134.2 -76.1 179.5 28.5 1.5 -2.3 9 1141 A S - 0 0 107 0, 0.0 -1,-0.0 0, 0.0 0, 0.0 -0.978 7.8-139.3-143.9 127.1 26.3 4.0 -0.6 10 1142 A Q - 0 0 158 -2,-0.4 3,-0.1 1,-0.1 2,-0.0 -0.538 30.6-103.6 -84.9 149.9 23.8 6.5 -2.0 11 1143 A P - 0 0 113 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 -0.294 48.7 -80.8 -69.8 154.7 23.5 10.1 -0.7 12 1144 A V - 0 0 132 1,-0.1 2,-0.4 -2,-0.0 6,-0.0 -0.040 53.0 -99.4 -51.2 157.4 20.6 11.1 1.5 13 1145 A I - 0 0 46 -3,-0.1 -1,-0.1 1,-0.1 2,-0.1 -0.669 39.1-104.3 -86.3 135.4 17.3 12.0 -0.2 14 1146 A S >> - 0 0 54 -2,-0.4 4,-3.0 1,-0.2 3,-1.7 -0.346 27.3-121.3 -59.1 127.8 16.5 15.6 -0.8 15 1147 A A H 3>>S+ 0 0 58 1,-0.3 4,-1.4 2,-0.2 5,-0.5 0.795 107.6 77.9 -38.4 -34.9 13.8 16.8 1.7 16 1148 A Q H 345S+ 0 0 160 1,-0.2 4,-0.4 2,-0.2 -1,-0.3 0.915 121.4 2.1 -41.9 -59.2 11.8 17.6 -1.4 17 1149 A E H <>5S+ 0 0 94 -3,-1.7 4,-2.3 2,-0.1 5,-0.2 0.779 124.0 72.6-100.0 -37.4 10.9 14.0 -1.9 18 1150 A Q H X5S+ 0 0 68 -4,-3.0 4,-2.4 1,-0.2 3,-0.3 0.914 98.7 49.2 -42.5 -57.6 12.6 12.5 1.1 19 1151 A E H X5S+ 0 0 123 -4,-1.4 4,-2.7 1,-0.2 5,-0.4 0.942 108.0 53.0 -48.9 -57.3 10.0 14.0 3.4 20 1152 A T H >X S+ 0 0 0 -4,-2.2 4,-1.9 -5,-0.4 3,-1.4 0.982 104.5 57.6 -65.8 -59.3 4.2 8.0 3.5 25 1157 A Y H 3X S+ 0 0 68 -4,-3.1 4,-2.6 1,-0.3 5,-0.2 0.869 104.2 54.8 -37.5 -51.4 6.3 5.0 4.6 26 1158 A G H 3X S+ 0 0 34 -4,-1.6 4,-1.8 1,-0.2 -1,-0.3 0.886 106.3 51.3 -53.0 -42.6 4.8 5.4 8.1 27 1159 A K H X S+ 0 0 99 -4,-2.0 4,-1.8 2,-0.2 3,-1.0 0.995 110.3 45.1 -59.1 -70.2 0.1 -4.4 10.3 34 1166 A K H 3X S+ 0 0 153 -4,-1.9 4,-0.9 1,-0.3 -1,-0.2 0.767 119.8 46.9 -46.0 -26.9 -3.7 -4.1 10.6 35 1167 A H H 3X S+ 0 0 18 -4,-2.1 4,-2.0 -5,-0.2 -1,-0.3 0.798 102.7 62.4 -85.9 -32.4 -3.7 -6.2 7.5 36 1168 A A H <<>S+ 0 0 0 -4,-2.4 5,-3.1 -3,-1.0 4,-0.5 0.939 106.2 44.4 -58.0 -50.2 -1.2 -8.7 8.8 37 1169 A N H ><5S+ 0 0 115 -4,-1.8 3,-1.3 3,-0.2 -1,-0.2 0.917 107.1 60.5 -61.5 -44.9 -3.5 -9.8 11.6 38 1170 A K H 3<5S+ 0 0 145 -4,-0.9 -1,-0.2 -5,-0.3 -2,-0.2 0.921 111.7 38.3 -48.1 -52.2 -6.5 -10.0 9.3 39 1171 A M T 3<5S- 0 0 55 -4,-2.0 -1,-0.3 2,-0.1 -2,-0.2 0.532 115.5-120.5 -77.7 -6.0 -4.8 -12.6 7.2 40 1172 A D T < 5 + 0 0 140 -3,-1.3 -3,-0.2 -4,-0.5 -2,-0.1 0.883 69.6 131.2 68.0 39.4 -3.4 -14.1 10.4 41 1173 A V < - 0 0 40 -5,-3.1 -1,-0.2 -6,-0.2 -2,-0.1 -0.965 66.0 -90.4-127.8 142.7 0.2 -13.6 9.2 42 1174 A P >> - 0 0 73 0, 0.0 4,-2.0 0, 0.0 3,-0.5 -0.104 38.6-114.1 -48.0 138.6 3.2 -12.1 11.0 43 1175 A P H 3> S+ 0 0 58 0, 0.0 4,-0.7 0, 0.0 -7,-0.1 0.726 121.2 45.0 -47.9 -23.3 3.7 -8.3 10.4 44 1176 A A H 34 S+ 0 0 65 2,-0.2 -11,-0.0 1,-0.1 -12,-0.0 0.805 105.3 59.1 -91.2 -35.6 6.9 -9.3 8.6 45 1177 A I H <4 S+ 0 0 105 -3,-0.5 3,-0.2 1,-0.2 -1,-0.1 0.934 102.2 54.5 -59.0 -48.9 5.4 -12.2 6.6 46 1178 A L H < S- 0 0 1 -4,-2.0 2,-0.3 1,-0.2 -1,-0.2 0.957 132.5 -14.4 -49.3 -62.3 2.8 -10.0 4.9 47 1179 A A < - 0 0 0 -4,-0.7 -1,-0.2 -5,-0.2 2,-0.1 -0.936 67.4-137.0-151.7 124.2 5.4 -7.5 3.6 48 1180 A T >> - 0 0 71 -2,-0.3 4,-1.8 -3,-0.2 3,-1.6 -0.426 33.5-106.5 -78.6 154.1 9.0 -7.0 4.5 49 1181 A N H 3> S+ 0 0 83 1,-0.3 4,-3.3 2,-0.2 5,-0.3 0.847 119.7 65.9 -45.9 -38.8 10.5 -3.5 5.0 50 1182 A K H 3> S+ 0 0 99 1,-0.2 4,-1.7 2,-0.2 -1,-0.3 0.900 105.9 41.4 -51.6 -45.1 12.3 -4.1 1.7 51 1183 A I H <> S+ 0 0 8 -3,-1.6 4,-2.6 2,-0.2 5,-0.2 0.953 114.0 50.6 -68.9 -51.4 8.9 -4.0 -0.1 52 1184 A L H X S+ 0 0 1 -4,-1.8 4,-2.3 1,-0.2 5,-0.2 0.921 108.9 53.1 -52.5 -48.8 7.4 -1.2 1.9 53 1185 A V H X S+ 0 0 59 -4,-3.3 4,-1.0 1,-0.2 -1,-0.2 0.940 110.1 46.8 -52.7 -53.3 10.5 1.0 1.2 54 1186 A D H >X>S+ 0 0 19 -4,-1.7 4,-3.1 -5,-0.3 3,-1.2 0.935 111.3 51.1 -55.5 -50.4 10.2 0.4 -2.5 55 1187 A M H 3X5S+ 0 0 0 -4,-2.6 4,-1.8 1,-0.3 -1,-0.2 0.855 108.9 52.2 -56.5 -36.3 6.5 1.2 -2.5 56 1188 A A H 3<5S+ 0 0 3 -4,-2.3 -1,-0.3 -5,-0.2 -2,-0.2 0.691 114.8 43.6 -73.7 -18.8 7.3 4.4 -0.6 57 1189 A K H <<5S+ 0 0 92 -3,-1.2 -2,-0.2 -4,-1.0 -3,-0.2 0.910 123.7 30.8 -90.0 -54.7 9.8 5.3 -3.2 58 1190 A M H <5S- 0 0 48 -4,-3.1 42,-1.4 -5,-0.1 41,-0.4 0.779 91.1-150.0 -75.1 -27.7 8.0 4.5 -6.5 59 1191 A R << - 0 0 11 -4,-1.8 40,-1.5 -5,-0.5 2,-0.3 0.955 16.9-159.4 54.9 54.8 4.6 5.3 -4.8 60 1192 A P + 0 0 0 0, 0.0 27,-0.2 0, 0.0 28,-0.2 -0.501 21.5 179.3 -69.8 125.2 2.7 2.8 -7.0 61 1193 A T + 0 0 19 -2,-0.3 2,-0.4 26,-0.1 27,-0.1 0.690 66.1 62.2 -97.3 -24.5 -1.0 3.5 -7.2 62 1194 A T S >> S- 0 0 49 1,-0.1 4,-1.8 26,-0.0 3,-0.9 -0.862 80.6-130.7-107.6 138.5 -1.9 0.6 -9.5 63 1195 A V H 3> S+ 0 0 35 -2,-0.4 4,-2.3 1,-0.3 5,-0.2 0.792 107.0 67.0 -52.9 -28.8 -1.4 -3.1 -8.6 64 1196 A E H 3> S+ 0 0 116 1,-0.2 4,-0.8 2,-0.2 -1,-0.3 0.939 104.0 40.7 -58.4 -50.1 0.3 -3.4 -12.0 65 1197 A N H X> S+ 0 0 4 -3,-0.9 4,-0.6 1,-0.2 3,-0.5 0.862 110.5 59.8 -67.2 -36.5 3.2 -1.2 -10.9 66 1198 A V H >< S+ 0 0 0 -4,-1.8 3,-2.2 1,-0.2 6,-0.2 0.923 96.8 59.2 -57.6 -47.2 3.3 -2.9 -7.5 67 1199 A K H 3< S+ 0 0 67 -4,-2.3 -1,-0.2 1,-0.3 -2,-0.2 0.847 99.4 58.8 -50.9 -36.8 3.9 -6.3 -9.0 68 1200 A R H << S+ 0 0 123 -4,-0.8 -1,-0.3 -3,-0.5 -2,-0.2 0.753 85.3 109.1 -65.5 -23.9 7.1 -4.8 -10.5 69 1201 A I S << S- 0 0 4 -3,-2.2 3,-0.3 -4,-0.6 2,-0.3 -0.108 81.3-101.6 -52.5 151.0 8.2 -4.0 -7.0 70 1202 A D S S+ 0 0 99 1,-0.2 -16,-0.1 -20,-0.2 -1,-0.1 -0.575 102.4 19.8 -79.7 137.9 11.1 -6.1 -5.7 71 1203 A G S S+ 0 0 49 1,-0.3 2,-0.3 -2,-0.3 -1,-0.2 -0.132 94.9 111.7 98.7 -38.0 10.3 -8.8 -3.2 72 1204 A V - 0 0 15 -3,-0.3 2,-0.3 -6,-0.2 -1,-0.3 -0.534 60.7-140.8 -74.0 132.4 6.6 -9.1 -4.3 73 1205 A S >> - 0 0 75 -2,-0.3 4,-1.1 1,-0.1 3,-0.6 -0.711 36.0 -79.8 -95.9 145.2 5.7 -12.3 -6.1 74 1206 A E T 34 S+ 0 0 185 -2,-0.3 2,-1.3 1,-0.2 -1,-0.1 -0.061 116.9 6.0 -40.8 131.3 3.3 -12.4 -9.0 75 1207 A G T >4 S+ 0 0 37 1,-0.1 3,-2.3 -3,-0.1 4,-0.5 -0.380 108.4 88.7 88.9 -58.5 -0.2 -12.2 -7.8 76 1208 A K G X> S+ 0 0 65 -2,-1.3 4,-1.2 -3,-0.6 3,-0.7 0.868 74.5 71.8 -37.6 -51.0 0.7 -11.7 -4.1 77 1209 A A G >< S+ 0 0 0 -4,-1.1 3,-1.4 1,-0.2 -1,-0.3 0.838 87.5 66.0 -34.0 -48.7 0.7 -7.9 -4.8 78 1210 A A G X4 S+ 0 0 51 -3,-2.3 3,-1.7 1,-0.3 -1,-0.2 0.922 98.1 48.7 -40.3 -67.1 -3.1 -8.2 -5.1 79 1211 A M G <4 S+ 0 0 68 -3,-0.7 -1,-0.3 -4,-0.5 -2,-0.2 0.778 103.9 65.2 -46.9 -28.1 -3.6 -9.1 -1.4 80 1212 A L G + 0 0 25 -3,-1.7 4,-3.2 1,-0.2 5,-0.3 0.953 65.6 61.6 -66.4 -51.7 -3.9 -3.8 -2.2 82 1214 A P H > S+ 0 0 54 0, 0.0 4,-0.5 0, 0.0 -1,-0.2 0.720 104.1 55.7 -48.0 -22.5 -4.7 -2.1 1.1 83 1215 A L H >> S+ 0 0 0 -3,-0.4 3,-1.3 2,-0.2 4,-0.8 0.985 113.6 32.2 -75.6 -67.3 -1.1 -0.9 1.0 84 1216 A W H 3X S+ 0 0 24 -4,-1.3 4,-2.0 1,-0.3 3,-0.4 0.809 108.8 72.3 -60.7 -30.1 -0.9 0.8 -2.3 85 1217 A E H 3X S+ 0 0 105 -4,-3.2 4,-1.0 1,-0.3 -1,-0.3 0.839 97.0 49.9 -54.2 -34.6 -4.5 1.9 -1.9 86 1218 A V H S+ 0 0 5 -4,-2.3 5,-1.8 2,-0.2 4,-0.5 0.827 114.9 57.7 -84.1 -35.3 -0.9 11.6 -3.1 92 1224 A Q H <5S+ 0 0 147 -4,-1.6 -2,-0.2 -5,-0.3 -3,-0.2 0.824 112.3 42.1 -64.2 -31.8 -4.4 12.2 -4.4 93 1225 A T T <5S+ 0 0 91 -4,-3.0 -1,-0.2 1,-0.2 -2,-0.2 0.624 124.6 36.7 -89.0 -15.7 -5.1 14.4 -1.4 94 1226 A N T 5S- 0 0 97 -4,-0.4 -2,-0.2 -5,-0.3 -1,-0.2 0.154 103.5-124.9-119.8 15.0 -1.6 16.0 -1.6 95 1227 A S T 5 + 0 0 116 -4,-0.5 2,-0.3 1,-0.2 -3,-0.2 0.843 53.5 167.0 41.6 40.9 -1.3 16.1 -5.4 96 1228 A V < - 0 0 33 -5,-1.8 -1,-0.2 -6,-0.1 -2,-0.1 -0.625 39.8-104.3 -87.5 144.0 1.9 14.2 -4.9 97 1229 A Q + 0 0 147 -2,-0.3 2,-0.2 -3,-0.1 3,-0.1 -0.297 47.3 169.5 -64.8 148.5 3.7 12.6 -7.9 98 1230 A T + 0 0 19 1,-0.2 -39,-0.2 -7,-0.0 3,-0.1 -0.825 45.3 50.0-146.8-175.5 3.4 8.8 -8.2 99 1231 A D + 0 0 64 -40,-1.5 2,-1.1 -41,-0.4 -1,-0.2 0.889 57.4 171.8 42.5 49.9 4.1 5.9 -10.6 100 1232 A L + 0 0 75 -42,-1.4 -1,-0.2 -43,-0.1 -41,-0.1 -0.145 27.7 136.4 -81.4 42.1 7.6 7.2 -11.1 101 1233 A F - 0 0 39 -2,-1.1 3,-0.2 -43,-0.1 -3,-0.0 -0.228 58.4-131.3 -82.6 175.9 8.5 4.1 -13.0 102 1234 A S S S+ 0 0 115 1,-0.2 2,-1.1 -2,-0.0 -1,-0.1 0.881 95.6 48.2 -94.0 -51.6 10.5 3.8 -16.2 103 1235 A S S S+ 0 0 76 2,-0.0 -1,-0.2 0, 0.0 2,-0.1 -0.746 77.8 165.8 -96.4 91.1 8.3 1.5 -18.3 104 1236 A T - 0 0 85 -2,-1.1 -4,-0.0 -3,-0.2 -5,-0.0 -0.406 31.4-116.2 -97.7 176.4 4.8 3.0 -18.1 105 1237 A K - 0 0 99 -2,-0.1 -1,-0.0 1,-0.1 -2,-0.0 -0.912 22.6-123.5-118.6 143.9 1.6 2.3 -20.1 106 1238 A P - 0 0 119 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 0.054 23.5-112.9 -69.7-175.3 -0.3 4.8 -22.3 107 1239 A Q + 0 0 194 1,-0.1 -2,-0.0 2,-0.1 0, 0.0 -0.749 45.8 153.0-128.1 84.7 -4.0 5.7 -22.0 108 1240 A S - 0 0 117 -2,-0.4 -1,-0.1 0, 0.0 0, 0.0 0.432 62.7-112.9 -89.1 -0.4 -6.0 4.4 -24.9 109 1241 A G - 0 0 58 -3,-0.1 -2,-0.1 0, 0.0 0, 0.0 0.989 36.6-147.3 65.6 81.6 -9.2 4.2 -22.8 110 1242 A P - 0 0 123 0, 0.0 2,-0.2 0, 0.0 -3,-0.0 -0.040 10.1-158.9 -69.7 177.1 -10.0 0.5 -22.4 111 1243 A S + 0 0 117 0, 0.0 2,-0.3 0, 0.0 0, 0.0 -0.746 22.5 144.9-166.0 112.1 -13.5 -1.0 -22.2 112 1244 A S 0 0 122 -2,-0.2 0, 0.0 0, 0.0 0, 0.0 -0.890 360.0 360.0-142.6 171.6 -14.6 -4.4 -20.8 113 1245 A G 0 0 133 -2,-0.3 0, 0.0 0, 0.0 0, 0.0 -0.247 360.0 360.0 58.2 360.0 -17.4 -6.0 -18.8