==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 27-NOV-99 1DH3 . COMPND 2 MOLECULE: DNA (5'- . SOURCE 2 SYNTHETIC: YES; . AUTHOR M.A.SCHUMACHER,R.H.GOODMAN,R.G.BRENNAN . 110 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 10476.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 113102.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 20 18.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 92 83.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 285 A K > 0 0 189 0, 0.0 4,-1.8 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 146.2 96.2 7.8 54.7 2 286 A R H > + 0 0 199 1,-0.2 4,-1.5 2,-0.2 5,-0.1 0.712 360.0 45.1 -25.8 -47.4 93.5 10.0 56.4 3 287 A E H >> S+ 0 0 125 1,-0.2 4,-1.7 2,-0.2 3,-1.0 0.986 106.9 54.8 -64.6 -75.6 92.8 11.7 53.3 4 288 A V H 3> S+ 0 0 77 1,-0.3 4,-1.9 2,-0.2 -2,-0.2 0.669 110.7 48.4 -23.1 -45.6 92.6 8.7 50.9 5 289 A R H 3X S+ 0 0 157 -4,-1.8 4,-4.6 2,-0.2 3,-0.4 0.977 107.1 53.2 -64.4 -58.2 90.1 7.1 53.1 6 290 A L H X S+ 0 0 90 -4,-4.6 3,-2.0 1,-0.3 4,-1.8 0.919 104.6 56.3 -54.5 -48.7 84.4 7.1 52.0 10 294 A R H 3X S+ 0 0 150 -4,-4.5 4,-0.9 1,-0.3 -1,-0.3 0.868 104.5 53.2 -56.7 -35.5 82.9 10.0 50.5 11 295 A E H 3X S+ 0 0 100 -4,-1.6 4,-1.5 -3,-0.4 -1,-0.3 0.600 105.8 54.6 -76.5 -7.6 82.3 8.1 47.3 12 296 A A H X S+ 0 0 113 -4,-0.9 4,-1.8 -5,-0.3 3,-0.7 0.985 109.9 43.1 -71.4 -68.4 77.5 9.0 47.2 15 299 A E H 3X S+ 0 0 89 -4,-1.5 4,-1.4 1,-0.3 -2,-0.2 0.798 116.5 49.9 -40.1 -41.0 76.6 5.6 45.7 16 300 A S H >X S+ 0 0 66 -4,-3.1 4,-2.3 2,-0.2 3,-0.6 0.940 102.3 56.7 -67.4 -49.0 74.5 4.8 48.7 17 301 A R H X S+ 0 0 113 -4,-2.3 3,-4.7 2,-0.2 4,-1.5 0.988 108.7 42.7 -67.8 -72.0 56.2 2.5 41.4 30 314 A R H 3X S+ 0 0 102 -4,-1.9 4,-3.5 1,-0.3 5,-0.3 0.722 104.9 72.6 -44.3 -26.1 54.9 -0.9 42.4 31 315 A V H 3X S+ 0 0 28 -4,-2.2 4,-1.6 -5,-0.3 -1,-0.3 0.869 107.9 31.4 -60.4 -33.4 52.6 1.1 44.5 32 316 A A H X S+ 0 0 112 -4,-1.6 3,-1.4 2,-0.2 4,-1.3 0.988 105.5 46.7 -76.2 -61.5 46.5 -1.1 39.1 37 321 A Q H 3X S+ 0 0 105 -4,-1.8 4,-2.3 1,-0.3 5,-0.2 0.839 111.0 66.9 -50.0 -33.5 46.2 -4.8 38.8 38 322 A N H 3X S+ 0 0 5 -4,-2.7 4,-1.5 -5,-0.3 -1,-0.3 0.870 98.7 40.7 -57.0 -48.5 44.1 -4.1 41.8 39 323 A K H XX S+ 0 0 163 -3,-1.4 4,-1.8 -4,-1.1 3,-0.6 0.999 115.9 55.5 -63.2 -62.3 41.2 -2.2 40.1 40 324 A T H 3X S+ 0 0 50 -4,-1.3 4,-2.6 1,-0.3 5,-0.2 0.735 104.1 49.1 -35.6 -45.8 41.2 -4.6 37.3 41 325 A L H 3X S+ 0 0 23 -4,-2.3 4,-1.8 1,-0.2 -1,-0.3 0.976 111.1 52.1 -66.0 -45.3 40.8 -7.7 39.3 42 326 A I H < S+ 0 0 37 -4,-2.7 3,-2.0 1,-0.2 5,-0.2 0.966 106.5 41.9 -62.3 -96.1 31.9 -9.2 36.2 48 332 A L H 3< S+ 0 0 32 -4,-0.9 3,-0.4 1,-0.3 -2,-0.2 0.535 108.4 58.7 -33.3 -24.0 31.7 -12.8 36.9 49 333 A K H >< S+ 0 0 131 -4,-1.5 2,-1.3 1,-0.3 3,-1.2 0.897 108.0 47.7 -78.4 -36.8 29.6 -12.6 40.1 50 334 A D T << S+ 0 0 122 -3,-2.0 -1,-0.3 -4,-0.8 3,-0.1 -0.774 113.0 45.8-106.0 82.3 26.9 -10.9 38.3 51 335 A L T 3 S+ 0 0 92 -2,-1.3 2,-0.4 -3,-0.4 -1,-0.3 -0.049 96.7 120.2 155.9 13.9 27.0 -13.3 35.5 52 336 A Y S X S+ 0 0 81 -3,-1.2 3,-1.2 -5,-0.2 -1,-0.2 -0.811 72.1 8.2-104.8 147.4 27.1 -16.1 38.2 53 337 A S T 3 S- 0 0 72 -2,-0.4 -1,-0.1 54,-0.3 -3,-0.1 0.071 138.0 -52.3 73.9 -22.2 24.6 -18.8 38.8 54 338 A H T 3 0 0 167 56,-0.0 -1,-0.3 1,-0.0 -4,-0.1 -0.066 360.0 360.0 154.6 -35.9 22.8 -17.7 35.5 55 339 A K < 0 0 162 -3,-1.2 -5,-0.1 -6,-0.1 -4,-0.0 -0.638 360.0 360.0-169.3 360.0 22.4 -13.9 36.1 56 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 57 285 C K > 0 0 165 0, 0.0 4,-0.9 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-145.5 73.3 36.6 63.2 58 286 C R H > + 0 0 179 2,-0.2 4,-2.3 3,-0.1 5,-0.2 0.743 360.0 64.3 -94.0 -43.5 74.5 34.3 60.5 59 287 C E H > S+ 0 0 123 1,-0.2 4,-1.8 2,-0.2 -1,-0.1 0.804 100.7 49.1 -50.2 -27.5 74.8 32.1 63.6 60 288 C V H > S+ 0 0 71 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.985 108.1 50.2 -78.7 -52.2 71.1 32.3 64.0 61 289 C R H X S+ 0 0 169 -4,-0.9 4,-2.0 1,-0.3 -2,-0.2 0.812 107.9 58.6 -50.3 -28.9 70.2 31.4 60.4 62 290 C L H X S+ 0 0 61 -4,-2.3 4,-2.1 1,-0.2 -1,-0.3 0.995 103.7 47.7 -66.0 -58.5 72.5 28.6 60.9 63 291 C M H X S+ 0 0 109 -4,-1.8 4,-2.6 2,-0.2 5,-0.2 0.854 111.3 49.7 -46.8 -48.2 70.6 27.1 63.8 64 292 C K H X S+ 0 0 162 -4,-1.8 4,-3.3 1,-0.2 -1,-0.2 0.989 110.3 49.3 -57.4 -63.4 67.2 27.3 62.2 65 293 C N H X S+ 0 0 108 -4,-2.0 4,-2.0 2,-0.2 -1,-0.2 0.817 110.7 55.0 -46.1 -32.2 68.4 25.6 59.1 66 294 C R H X S+ 0 0 173 -4,-2.1 4,-1.4 1,-0.2 -2,-0.2 0.996 112.4 39.3 -58.5 -72.7 70.0 23.0 61.4 67 295 C E H X S+ 0 0 104 -4,-2.6 4,-2.1 1,-0.2 -2,-0.2 0.787 112.3 60.3 -42.4 -44.3 66.8 22.2 63.1 68 296 C A H X S+ 0 0 44 -4,-3.3 4,-3.4 1,-0.3 3,-0.5 0.974 103.0 48.9 -47.1 -70.9 64.9 22.5 59.8 69 297 C A H X S+ 0 0 28 -4,-2.0 4,-0.8 1,-0.3 -1,-0.3 0.725 104.6 60.9 -41.0 -37.4 66.8 19.8 58.2 70 298 C R H >X S+ 0 0 150 -4,-1.4 3,-2.5 2,-0.2 4,-1.5 0.986 111.2 38.4 -58.3 -59.7 66.2 17.7 61.1 71 299 C E H 3X S+ 0 0 102 -4,-2.1 4,-1.7 -3,-0.5 3,-0.4 0.922 110.4 60.6 -50.8 -53.1 62.5 17.8 60.7 72 300 C S H 3X S+ 0 0 78 -4,-3.4 4,-0.9 1,-0.3 -1,-0.3 0.683 104.9 49.6 -51.2 -21.0 63.0 17.7 57.2 73 301 C R H X S+ 0 0 158 -4,-1.7 4,-2.3 2,-0.3 3,-1.0 0.848 103.5 46.4 -37.6 -77.1 59.5 13.3 57.0 76 304 C K H 3X S+ 0 0 120 -4,-0.9 4,-0.8 1,-0.3 -1,-0.3 0.798 113.0 56.1 -40.7 -40.4 61.2 11.5 54.3 77 305 C K H >X S+ 0 0 144 -4,-1.8 4,-2.1 1,-0.2 3,-1.0 0.955 108.6 43.6 -59.3 -51.1 61.6 8.9 56.8 78 306 C E H XX S+ 0 0 106 -4,-2.7 4,-2.0 -3,-1.0 3,-0.6 0.980 110.6 54.6 -59.4 -59.2 58.1 8.7 57.4 79 307 C Y H 3X S+ 0 0 105 -4,-2.3 4,-0.7 1,-0.3 -1,-0.3 0.628 108.3 50.0 -55.7 -4.6 57.0 8.8 53.8 80 308 C V H X S+ 0 0 49 -4,-2.0 4,-1.7 1,-0.3 3,-0.7 0.868 110.3 50.1 -43.8 -50.4 54.3 4.5 54.9 83 311 C L H 3X S+ 0 0 25 -4,-0.7 4,-2.1 -5,-0.3 5,-0.3 0.967 106.2 56.6 -59.2 -48.8 55.1 3.6 51.3 84 312 C E H 3X S+ 0 0 89 -4,-3.2 4,-0.7 2,-0.2 -1,-0.3 0.756 110.2 47.6 -55.1 -23.8 56.7 0.4 52.7 85 313 C N H XX S+ 0 0 97 -4,-1.4 3,-4.4 -3,-0.7 4,-0.8 0.951 104.8 54.7 -75.2 -78.0 53.4 -0.3 54.3 86 314 C R H 3X S+ 0 0 113 -4,-1.7 4,-4.6 1,-0.3 5,-0.2 0.601 104.0 54.4 -12.7 -55.7 51.0 0.3 51.5 87 315 C V H 3X S+ 0 0 11 -4,-2.1 4,-4.6 2,-0.3 -1,-0.3 0.911 106.9 52.9 -56.8 -46.1 52.7 -2.0 49.2 88 316 C A H X S+ 0 0 112 -4,-2.4 3,-2.2 2,-0.2 4,-2.2 0.963 109.9 43.9 -56.2 -69.6 47.6 -8.3 50.5 93 321 C Q H 3X S+ 0 0 88 -4,-2.0 4,-2.7 1,-0.3 3,-0.2 0.856 110.9 55.0 -34.8 -74.1 44.6 -7.2 48.6 94 322 C N H 3X S+ 0 0 5 -4,-1.9 4,-1.1 1,-0.3 -1,-0.3 0.678 110.7 46.0 -42.0 -25.4 45.9 -8.3 45.3 95 323 C K H X S+ 0 0 153 -4,-1.5 4,-1.9 2,-0.2 3,-0.7 0.958 111.7 48.9 -77.3 -36.8 42.2 -16.1 45.5 100 328 C E H 3X S+ 0 0 98 -4,-2.8 4,-1.8 1,-0.3 5,-0.4 0.977 107.8 52.5 -53.8 -65.5 38.6 -14.8 45.2 101 329 C L H 3X S+ 0 0 28 -4,-2.9 4,-1.0 1,-0.2 -1,-0.3 0.683 107.7 58.5 -48.5 -16.4 38.7 -14.8 41.5 102 330 C K H <> S+ 0 0 119 -3,-0.7 4,-2.5 -4,-0.4 -1,-0.2 0.977 103.3 43.7 -77.7 -61.6 39.8 -18.3 41.7 103 331 C A H X S+ 0 0 44 -4,-1.9 4,-0.8 2,-0.3 -2,-0.2 0.884 114.5 50.2 -49.8 -43.2 37.0 -19.9 43.6 104 332 C L H >< S+ 0 0 50 -4,-1.8 3,-1.6 1,-0.3 -1,-0.2 0.951 110.7 50.5 -62.9 -41.1 34.3 -18.1 41.6 105 333 C K H 3< S+ 0 0 104 -4,-1.0 3,-0.5 -5,-0.4 -1,-0.3 0.894 102.7 66.5 -58.1 -34.4 36.2 -19.3 38.6 106 334 C D H 3< S+ 0 0 86 -4,-2.5 2,-0.3 1,-0.2 -1,-0.3 0.663 98.0 47.1 -62.1 -25.5 35.9 -22.5 40.5 107 335 C L S << S- 0 0 49 -3,-1.6 2,-0.4 -4,-0.8 -54,-0.3 -0.537 87.0-170.2-121.5 73.4 32.1 -22.9 40.2 108 336 C Y > - 0 0 111 -3,-0.5 3,-0.5 -2,-0.3 -3,-0.1 -0.585 64.5 -18.3 -79.1 113.8 31.5 -22.2 36.2 109 337 C S T 3 S- 0 0 99 -2,-0.4 -1,-0.2 1,-0.3 -57,-0.0 0.190 145.9 -36.9 79.8 -8.5 28.2 -21.6 34.2 110 338 C H T 3 0 0 128 -3,-0.1 -1,-0.3 -56,-0.0 -57,-0.1 -0.319 360.0 360.0 159.1 -69.5 27.2 -23.4 37.6 111 339 C K < 0 0 168 -3,-0.5 -4,-0.2 -4,-0.0 -5,-0.0 -0.994 360.0 360.0-112.6 360.0 30.1 -26.4 39.0