==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 23-MAR-06 2DH7 . COMPND 2 MOLECULE: NUCLEOLYSIN TIAR; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.IMAI,K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 105 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7641.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 53.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 17.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 11.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 14.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 82 A G 0 0 120 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 92.6 -12.6 -4.3 -5.2 2 83 A S - 0 0 127 1,-0.1 2,-0.1 0, 0.0 0, 0.0 -0.442 360.0-131.4 -79.3 153.4 -15.6 -3.0 -3.3 3 84 A S + 0 0 120 -2,-0.1 2,-0.2 1,-0.0 -1,-0.1 -0.448 25.5 176.2 -98.4 173.7 -15.7 0.5 -1.8 4 85 A G - 0 0 73 -2,-0.1 2,-0.2 1,-0.0 -1,-0.0 -0.768 36.9 -44.8-153.9-161.3 -16.6 1.7 1.7 5 86 A S - 0 0 126 -2,-0.2 2,-1.2 1,-0.1 -1,-0.0 -0.488 64.2 -94.8 -81.9 151.9 -16.9 4.6 4.1 6 87 A S + 0 0 97 -2,-0.2 -1,-0.1 1,-0.1 2,-0.0 -0.510 48.7 170.2 -68.8 97.0 -14.1 7.1 4.5 7 88 A G + 0 0 70 -2,-1.2 -1,-0.1 0, 0.0 -2,-0.0 -0.240 20.1 150.2-103.8 44.5 -12.2 5.7 7.4 8 89 A Q - 0 0 93 1,-0.1 3,-0.1 -2,-0.0 36,-0.0 -0.153 45.7-136.8 -70.0 169.2 -9.2 8.0 7.2 9 90 A K S S+ 0 0 191 1,-0.3 2,-0.4 0, 0.0 -1,-0.1 0.896 83.4 14.7 -92.8 -55.1 -7.1 9.1 10.2 10 91 A K S S- 0 0 152 33,-0.1 2,-0.5 0, 0.0 -1,-0.3 -0.986 83.6-109.0-128.3 133.5 -6.5 12.8 9.6 11 92 A D - 0 0 129 -2,-0.4 2,-0.0 -3,-0.1 0, 0.0 -0.424 41.5-123.1 -61.1 108.9 -8.3 15.1 7.1 12 93 A T - 0 0 22 -2,-0.5 2,-2.0 1,-0.1 -1,-0.1 -0.295 14.7-127.4 -56.6 131.1 -5.7 15.7 4.4 13 94 A S S S- 0 0 88 1,-0.2 -1,-0.1 -3,-0.0 -2,-0.0 -0.510 75.6 -54.6 -82.6 72.9 -5.1 19.5 4.0 14 95 A N S S+ 0 0 150 -2,-2.0 -1,-0.2 1,-0.1 2,-0.1 0.901 93.4 167.1 58.9 42.8 -5.6 19.6 0.2 15 96 A H - 0 0 23 1,-0.1 2,-0.6 52,-0.0 50,-0.2 -0.300 37.8-109.3 -82.8 170.5 -3.0 16.9 -0.3 16 97 A F E -A 64 0A 58 48,-1.8 48,-1.5 50,-0.2 2,-0.5 -0.907 23.4-142.0-107.9 121.5 -2.4 14.9 -3.5 17 98 A H E -A 63 0A 76 -2,-0.6 76,-0.9 46,-0.2 2,-0.5 -0.694 15.7-162.8 -84.1 124.0 -3.3 11.2 -3.6 18 99 A V E -A 62 0A 0 44,-1.2 44,-2.3 -2,-0.5 2,-0.3 -0.931 9.2-142.1-112.3 122.9 -0.9 9.0 -5.5 19 100 A F E -AB 61 90A 60 71,-2.7 71,-2.1 -2,-0.5 2,-0.4 -0.591 14.6-168.6 -83.0 141.2 -1.9 5.6 -6.6 20 101 A V E +A 60 0A 0 40,-2.1 40,-2.8 -2,-0.3 69,-0.2 -0.928 8.3 177.8-135.5 110.7 0.7 2.7 -6.5 21 102 A G E +A 59 0A 5 -2,-0.4 67,-2.3 38,-0.3 38,-0.3 -0.313 56.7 46.8-100.1-174.3 0.0 -0.6 -8.2 22 103 A D + 0 0 103 36,-1.3 2,-1.0 65,-0.2 37,-0.2 0.914 69.7 177.6 45.7 52.6 2.1 -3.8 -8.6 23 104 A L - 0 0 3 -3,-0.2 -1,-0.2 64,-0.1 36,-0.2 -0.757 29.6-123.4 -91.4 100.3 3.0 -3.7 -4.9 24 105 A S > - 0 0 5 -2,-1.0 3,-0.9 59,-0.3 34,-0.2 0.130 17.3-117.7 -36.2 153.6 5.1 -6.8 -4.2 25 106 A P T 3 S+ 0 0 50 0, 0.0 31,-0.6 0, 0.0 -1,-0.1 0.774 114.1 60.4 -69.8 -27.2 3.7 -9.1 -1.5 26 107 A E T 3 S+ 0 0 137 57,-0.1 -2,-0.1 29,-0.1 58,-0.1 0.616 85.4 108.0 -76.0 -12.4 6.8 -8.5 0.6 27 108 A I < - 0 0 1 -3,-0.9 2,-0.3 56,-0.2 29,-0.3 -0.196 53.6-161.4 -63.4 157.5 6.0 -4.8 0.7 28 109 A T >> - 0 0 44 1,-0.1 4,-2.2 28,-0.0 3,-1.0 -0.999 32.7-116.7-145.7 144.0 4.7 -3.2 3.9 29 110 A T H 3> S+ 0 0 51 -2,-0.3 4,-1.7 1,-0.3 5,-0.1 0.836 121.1 50.1 -44.6 -38.1 2.8 -0.1 4.8 30 111 A E H 3> S+ 0 0 146 2,-0.2 4,-1.3 1,-0.2 -1,-0.3 0.856 107.7 53.5 -70.9 -36.0 5.9 1.0 6.7 31 112 A D H <> S+ 0 0 71 -3,-1.0 4,-2.2 2,-0.2 3,-0.4 0.955 109.1 46.7 -63.6 -52.1 8.2 0.2 3.8 32 113 A I H X S+ 0 0 1 -4,-2.2 4,-1.6 1,-0.2 5,-0.3 0.916 108.9 55.3 -56.7 -46.0 6.2 2.4 1.4 33 114 A K H < S+ 0 0 83 -4,-1.7 -1,-0.2 -5,-0.3 4,-0.2 0.837 118.3 35.1 -56.7 -33.9 6.1 5.3 3.9 34 115 A S H < S+ 0 0 88 -4,-1.3 -1,-0.3 -3,-0.4 -2,-0.2 0.639 114.1 58.3 -94.0 -18.4 9.9 5.1 4.1 35 116 A A H < S+ 0 0 22 -4,-2.2 -2,-0.2 1,-0.2 -3,-0.2 0.601 115.5 35.7 -85.3 -13.0 10.3 4.2 0.4 36 117 A F S >X S+ 0 0 0 -4,-1.6 3,-1.5 -5,-0.2 4,-1.2 0.430 93.5 88.8-115.9 -6.6 8.5 7.4 -0.6 37 118 A A T 34 S+ 0 0 47 1,-0.3 3,-0.2 -5,-0.3 -2,-0.1 0.919 75.1 68.9 -57.7 -46.1 9.9 9.6 2.1 38 119 A P T 34 S+ 0 0 104 0, 0.0 -1,-0.3 0, 0.0 3,-0.1 0.673 102.8 49.2 -47.9 -17.2 12.9 10.5 0.1 39 120 A F T <4 S- 0 0 30 -3,-1.5 2,-0.3 1,-0.4 -2,-0.2 0.883 126.1 -51.3 -90.5 -48.2 10.4 12.4 -2.1 40 121 A G S < S- 0 0 10 -4,-1.2 -1,-0.4 -3,-0.2 2,-0.1 -0.984 72.3 -48.3-176.5 175.6 8.5 14.3 0.5 41 122 A K - 0 0 132 -2,-0.3 24,-1.3 -3,-0.1 2,-0.4 -0.371 52.7-139.0 -62.9 134.8 6.6 14.3 3.8 42 123 A I E +C 64 0A 15 22,-0.2 22,-0.2 1,-0.1 3,-0.1 -0.834 28.5 169.2-101.3 133.0 4.0 11.6 4.0 43 124 A S E S+ 0 0 34 20,-0.7 2,-0.4 -2,-0.4 -1,-0.1 0.758 73.6 14.8-106.8 -40.4 0.6 12.3 5.6 44 125 A D E + 0 0 42 19,-0.4 19,-3.2 -35,-0.1 2,-0.3 -0.963 67.5 155.4-143.5 122.5 -1.4 9.2 4.6 45 126 A A E +C 62 0A 11 -2,-0.4 2,-0.3 17,-0.2 17,-0.2 -0.978 5.1 155.4-149.9 133.1 -0.0 5.9 3.3 46 127 A R E -C 61 0A 146 15,-1.9 15,-2.1 -2,-0.3 2,-0.6 -0.992 33.5-133.5-155.4 153.1 -1.3 2.3 3.3 47 128 A V E -C 60 0A 9 -2,-0.3 13,-0.2 13,-0.2 -18,-0.2 -0.876 27.5-130.8-115.5 100.0 -1.0 -1.0 1.4 48 129 A V E -C 59 0A 23 11,-0.7 9,-1.5 -2,-0.6 10,-0.6 -0.249 35.7-176.7 -49.8 114.3 -4.4 -2.6 0.6 49 130 A K E -C 56 0A 77 7,-0.3 7,-0.2 8,-0.1 -1,-0.0 -0.841 29.1 -96.8-118.1 155.7 -3.9 -6.2 1.7 50 131 A D - 0 0 59 5,-1.4 -1,-0.0 -2,-0.3 6,-0.0 -0.335 18.3-145.5 -68.2 149.6 -6.3 -9.2 1.5 51 132 A M S S+ 0 0 190 2,-0.1 -1,-0.1 3,-0.1 -2,-0.0 0.532 97.2 45.5 -91.9 -8.7 -8.3 -10.2 4.5 52 133 A A S S+ 0 0 87 3,-0.1 -1,-0.1 0, 0.0 -2,-0.0 0.882 131.3 13.5 -96.7 -58.5 -8.1 -13.9 3.7 53 134 A T S S- 0 0 96 2,-0.1 -2,-0.1 0, 0.0 -4,-0.0 0.839 90.7-135.7 -87.7 -38.5 -4.4 -14.5 2.9 54 135 A G + 0 0 37 1,-0.3 2,-0.4 0, 0.0 -3,-0.1 0.827 54.4 136.5 85.1 34.4 -3.1 -11.1 4.2 55 136 A K S S- 0 0 116 1,-0.0 -5,-1.4 2,-0.0 -1,-0.3 -0.935 70.6 -85.0-118.3 139.0 -0.8 -10.4 1.2 56 137 A S E - C 0 49A 11 -31,-0.6 -7,-0.3 -2,-0.4 -8,-0.1 -0.116 36.8-146.5 -40.9 104.2 -0.3 -7.1 -0.5 57 138 A K E - 0 0 94 -9,-1.5 -1,-0.2 2,-0.2 -8,-0.1 0.833 48.7 -97.3 -45.3 -36.8 -3.2 -7.3 -3.0 58 139 A G E S+ 0 0 21 -10,-0.6 -36,-1.3 1,-0.3 2,-0.3 0.584 94.3 70.8 123.3 23.4 -1.0 -5.3 -5.4 59 140 A Y E +AC 21 48A 69 -11,-0.5 -11,-0.7 -38,-0.3 -1,-0.3 -0.947 47.1 162.2-165.5 143.1 -2.1 -1.7 -5.0 60 141 A G E -AC 20 47A 1 -40,-2.8 -40,-2.1 -2,-0.3 2,-0.4 -0.831 29.1-110.6-149.1-173.4 -1.9 1.0 -2.4 61 142 A F E -AC 19 46A 72 -15,-2.1 -15,-1.9 -2,-0.2 2,-0.3 -0.988 19.6-177.5-133.2 141.2 -2.2 4.8 -1.8 62 143 A V E -AC 18 45A 1 -44,-2.3 -44,-1.2 -2,-0.4 -17,-0.2 -0.876 9.9-162.2-142.2 106.3 0.3 7.4 -0.9 63 144 A S E -A 17 0A 5 -19,-3.2 -20,-0.7 -2,-0.3 -19,-0.4 -0.521 7.2-154.0 -86.4 154.3 -0.6 11.0 -0.2 64 145 A F E -AC 16 42A 0 -48,-1.5 -48,-1.8 -2,-0.2 -22,-0.2 -0.964 22.6-131.4-130.9 147.2 1.9 13.9 -0.3 65 146 A Y S S+ 0 0 125 -24,-1.3 2,-0.2 -2,-0.3 -1,-0.1 0.890 95.1 20.3 -61.0 -40.7 1.9 17.3 1.4 66 147 A N S > S- 0 0 84 -25,-0.2 4,-0.7 1,-0.1 -50,-0.2 -0.692 75.2-121.9-122.8 176.2 2.8 19.0 -1.9 67 148 A K H > S+ 0 0 84 -2,-0.2 4,-2.7 2,-0.2 3,-0.5 0.940 105.8 55.2 -83.5 -55.7 2.5 18.2 -5.6 68 149 A L H > S+ 0 0 105 1,-0.3 4,-2.2 2,-0.2 -1,-0.1 0.905 107.6 51.8 -42.8 -54.0 6.1 18.5 -6.7 69 150 A D H > S+ 0 0 45 1,-0.2 4,-1.3 2,-0.2 -1,-0.3 0.903 111.0 48.5 -51.6 -45.8 7.1 16.0 -4.0 70 151 A A H >X S+ 0 0 0 -4,-0.7 4,-2.7 -3,-0.5 3,-0.6 0.949 106.8 54.5 -61.0 -51.5 4.5 13.6 -5.3 71 152 A E H 3X S+ 0 0 93 -4,-2.7 4,-2.1 1,-0.2 5,-0.3 0.881 101.9 60.4 -50.0 -42.6 5.5 14.0 -9.0 72 153 A N H 3X S+ 0 0 67 -4,-2.2 4,-3.2 -5,-0.3 -1,-0.2 0.921 111.4 38.4 -52.2 -49.0 9.1 13.0 -8.0 73 154 A A H S+ 0 0 0 -4,-1.3 4,-1.6 -3,-0.6 5,-1.5 0.956 109.0 60.1 -68.0 -52.3 7.9 9.6 -6.7 74 155 A I H <5S+ 0 0 23 -4,-2.7 -1,-0.2 1,-0.2 -2,-0.2 0.839 119.5 31.4 -44.0 -38.8 5.3 9.1 -9.5 75 156 A V H <5S+ 0 0 109 -4,-2.1 -2,-0.2 -5,-0.2 5,-0.2 0.927 126.9 39.7 -85.9 -54.5 8.2 9.3 -11.9 76 157 A H H X5S+ 0 0 118 -4,-3.2 4,-0.6 -5,-0.3 -3,-0.2 0.987 125.0 36.5 -58.8 -64.2 11.1 7.9 -9.8 77 158 A M T ><5S+ 0 0 10 -4,-1.6 3,-1.5 -5,-0.2 10,-0.4 0.880 88.1 113.3 -57.5 -39.7 9.1 5.1 -8.1 78 159 A G T 34