==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 23-MAR-06 2DH9 . COMPND 2 MOLECULE: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN M; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.OCHI,K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 89 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6204.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 67.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 21.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 11.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 11.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 18.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 533 A G 0 0 119 0, 0.0 52,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 179.0 -0.6 22.1 0.2 2 534 A S + 0 0 141 1,-0.0 0, 0.0 0, 0.0 0, 0.0 0.895 360.0 109.1 67.2 41.1 -2.0 23.1 3.6 3 535 A S S S- 0 0 125 0, 0.0 -1,-0.0 0, 0.0 0, 0.0 0.784 96.4 -59.3-109.6 -59.6 -5.6 22.9 2.2 4 536 A G - 0 0 53 2,-0.0 50,-0.0 0, 0.0 0, 0.0 0.187 61.3-179.4 173.0 45.5 -7.3 19.9 3.8 5 537 A S - 0 0 77 1,-0.1 2,-0.4 46,-0.0 48,-0.1 -0.049 15.5-144.2 -54.7 161.0 -5.5 16.6 3.0 6 538 A S - 0 0 20 46,-0.2 46,-0.9 48,-0.2 2,-0.4 -0.997 4.6-150.7-135.9 136.9 -6.9 13.4 4.4 7 539 A G E -AB 51 80A 5 73,-0.6 73,-1.0 -2,-0.4 44,-0.2 -0.874 10.0-148.9-110.4 140.1 -5.2 10.2 5.7 8 540 A I E -AB 50 79A 0 42,-2.5 42,-1.0 -2,-0.4 2,-0.3 -0.239 10.2-133.7 -92.6-175.8 -6.6 6.7 5.6 9 541 A F E -AB 49 78A 52 69,-2.2 69,-1.8 40,-0.2 2,-0.3 -0.995 12.0-163.3-143.6 147.6 -6.0 3.7 7.9 10 542 A V E -A 48 0A 0 38,-2.2 38,-1.4 -2,-0.3 2,-0.3 -0.948 5.7-175.2-131.9 152.2 -5.2 0.0 7.5 11 543 A R E +A 47 0A 145 -2,-0.3 65,-1.1 36,-0.2 36,-0.2 -0.971 59.1 41.8-144.3 157.6 -5.5 -3.0 9.8 12 544 A N S S+ 0 0 83 34,-0.9 34,-0.2 33,-0.5 35,-0.2 0.877 72.7 164.9 73.9 39.3 -4.6 -6.7 9.7 13 545 A L - 0 0 3 33,-1.7 -1,-0.2 32,-0.2 2,-0.2 -0.666 41.0-106.1 -91.7 144.3 -1.2 -6.1 8.1 14 546 A P > - 0 0 14 0, 0.0 3,-1.5 0, 0.0 -1,-0.1 -0.453 25.6-121.7 -69.7 134.8 1.6 -8.7 8.1 15 547 A F T 3 S+ 0 0 147 1,-0.3 30,-0.1 -2,-0.2 -2,-0.0 0.902 112.0 60.3 -38.1 -63.1 4.5 -8.2 10.4 16 548 A D T 3 S+ 0 0 133 2,-0.1 -1,-0.3 -3,-0.0 -3,-0.0 0.834 77.9 109.7 -34.7 -46.3 7.0 -8.2 7.6 17 549 A F < - 0 0 8 -3,-1.5 2,-0.3 53,-0.1 29,-0.1 -0.093 58.6-164.6 -39.4 107.6 5.1 -5.2 6.2 18 550 A T >> - 0 0 72 1,-0.1 4,-1.6 18,-0.0 3,-1.2 -0.724 34.6-105.5-102.7 152.4 7.6 -2.4 6.8 19 551 A W H 3> S+ 0 0 143 -2,-0.3 4,-1.8 1,-0.3 5,-0.1 0.855 121.3 60.5 -38.2 -46.8 6.9 1.4 6.7 20 552 A K H 3> S+ 0 0 96 1,-0.2 4,-2.6 2,-0.2 3,-0.3 0.922 105.0 47.4 -49.3 -51.2 8.7 1.4 3.3 21 553 A M H <>>S+ 0 0 64 -3,-1.2 4,-2.2 1,-0.2 5,-0.7 0.968 104.0 58.9 -55.8 -58.6 6.1 -1.0 1.9 22 554 A L H X5S+ 0 0 0 -4,-1.6 4,-0.9 1,-0.2 -1,-0.2 0.839 115.7 38.6 -39.3 -42.0 3.1 0.9 3.2 23 555 A K H X5S+ 0 0 68 -4,-1.8 4,-2.5 -3,-0.3 -2,-0.2 0.989 123.1 36.3 -74.4 -69.0 4.4 3.9 1.2 24 556 A D H >X5S+ 0 0 98 -4,-2.6 4,-0.8 2,-0.2 3,-0.7 0.954 116.2 53.6 -48.2 -62.7 5.7 2.2 -2.0 25 557 A K H ><5S+ 0 0 64 -4,-2.2 3,-0.8 1,-0.3 4,-0.3 0.868 117.4 38.7 -40.5 -47.1 2.9 -0.4 -2.1 26 558 A F H >X S-D 43 0B 122 3,-2.7 3,-2.6 -2,-0.3 -2,-0.0 -0.995 72.0 -10.5-137.9 130.5 1.8 -1.0 20.6 41 573 A N T 3 S- 0 0 139 -2,-0.4 3,-0.1 1,-0.3 -1,-0.1 0.772 126.8 -60.3 55.7 25.9 3.7 -2.2 23.8 42 574 A G T 3 S+ 0 0 64 1,-0.2 2,-0.4 0, 0.0 -1,-0.3 0.269 123.3 100.8 86.9 -12.8 6.8 -2.2 21.6 43 575 A K E < S-D 40 0B 111 -3,-2.6 -3,-2.7 1,-0.0 -1,-0.2 -0.891 76.3-115.7-110.4 137.0 5.2 -4.7 19.3 44 576 A S E -D 39 0B 45 -2,-0.4 -5,-0.2 -5,-0.2 -6,-0.1 -0.249 15.4-158.7 -65.4 154.5 3.6 -3.9 15.9 45 577 A K - 0 0 88 -7,-1.1 -33,-0.5 2,-0.3 -32,-0.2 -0.216 45.8-103.2-129.1 42.4 -0.2 -4.5 15.4 46 578 A G S S+ 0 0 8 -34,-0.2 -33,-1.7 1,-0.1 -34,-0.9 0.857 85.6 120.3 36.2 52.2 -0.4 -4.7 11.7 47 579 A C E +A 11 0A 18 -9,-0.5 -9,-0.5 -36,-0.2 2,-0.3 -0.996 27.0 134.6-144.6 147.3 -1.8 -1.1 11.6 48 580 A G E -A 10 0A 0 -38,-1.4 -38,-2.2 -2,-0.3 2,-0.3 -0.970 35.4-113.5-171.4-177.7 -0.8 2.2 10.1 49 581 A V E -AC 9 36A 9 -13,-1.3 -13,-1.0 -2,-0.3 2,-0.3 -0.905 14.1-160.6-133.8 161.9 -1.9 5.3 8.1 50 582 A V E -AC 8 35A 0 -42,-1.0 -42,-2.5 -2,-0.3 2,-0.3 -0.972 4.1-160.0-148.1 129.1 -1.2 6.9 4.7 51 583 A K E -AC 7 34A 55 -17,-1.0 -18,-2.7 -2,-0.3 -17,-0.8 -0.835 9.0-164.9-110.3 147.4 -1.7 10.4 3.5 52 584 A F E - C 0 32A 1 -46,-0.9 -46,-0.2 -2,-0.3 -20,-0.1 -0.702 31.0-115.0-122.5 174.9 -1.9 11.6 -0.1 53 585 A E S S+ 0 0 131 -22,-0.6 -1,-0.1 -2,-0.2 -21,-0.1 0.904 99.5 39.3 -76.8 -43.9 -1.7 14.9 -2.0 54 586 A S S > S- 0 0 52 -23,-0.1 4,-1.2 1,-0.1 -48,-0.2 -0.759 76.3-130.4-109.0 155.1 -5.3 15.0 -3.2 55 587 A P H > S+ 0 0 78 0, 0.0 4,-1.6 0, 0.0 5,-0.2 0.832 107.4 57.9 -69.8 -33.7 -8.5 13.9 -1.3 56 588 A E H > S+ 0 0 125 1,-0.2 4,-1.9 2,-0.2 5,-0.1 0.872 104.5 51.5 -65.1 -37.8 -9.7 11.8 -4.1 57 589 A V H > S+ 0 0 23 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.854 103.8 59.1 -67.6 -35.6 -6.6 9.7 -4.0 58 590 A A H X S+ 0 0 0 -4,-1.2 4,-0.7 1,-0.2 -2,-0.2 0.951 114.8 33.5 -58.2 -53.0 -7.0 9.1 -0.3 59 591 A E H X S+ 0 0 98 -4,-1.6 4,-0.6 1,-0.2 -1,-0.2 0.783 112.6 64.7 -74.2 -28.0 -10.4 7.5 -0.7 60 592 A R H >X S+ 0 0 121 -4,-1.9 4,-1.8 1,-0.2 3,-1.4 0.920 99.1 51.4 -60.8 -45.7 -9.4 6.0 -4.0 61 593 A A H 3X>S+ 0 0 0 -4,-2.3 4,-2.6 1,-0.3 5,-0.9 0.811 101.3 63.1 -61.7 -30.4 -6.7 3.8 -2.3 62 594 A C H 3<5S+ 0 0 14 -4,-0.7 -1,-0.3 1,-0.2 15,-0.2 0.715 107.6 43.7 -67.3 -20.3 -9.3 2.6 0.1 63 595 A R H <<5S+ 0 0 201 -3,-1.4 -2,-0.2 -4,-0.6 -1,-0.2 0.813 123.8 33.1 -92.3 -37.2 -11.2 1.1 -2.9 64 596 A M H <5S+ 0 0 100 -4,-1.8 -2,-0.2 1,-0.0 -3,-0.2 0.934 126.3 38.5 -83.6 -53.7 -8.1 -0.4 -4.6 65 597 A M T ><5S+ 0 0 11 -4,-2.6 3,-1.5 -5,-0.2 -3,-0.2 0.983 95.9 87.2 -61.0 -60.8 -6.0 -1.4 -1.6 66 598 A N T 3 - 0 0 125 -2,-0.6 2,-1.2 5,-0.2 3,-0.5 -0.703 11.0-152.5 -83.9 104.6 -4.3 -10.1 0.7 70 602 A L T 3 S- 0 0 22 3,-2.6 -53,-0.1 -2,-0.9 -1,-0.0 -0.652 80.0 -27.4 -80.8 97.8 -0.7 -9.4 1.6 71 603 A S T 3 S- 0 0 125 -2,-1.2 -1,-0.3 1,-0.2 3,-0.1 0.783 134.5 -39.1 67.3 27.1 0.9 -12.9 1.7 72 604 A G S < S+ 0 0 54 -3,-0.5 2,-0.5 1,-0.2 -1,-0.2 0.683 115.5 117.9 95.1 21.4 -2.4 -14.4 2.5 73 605 A R - 0 0 105 -5,-0.0 -3,-2.6 -59,-0.0 -1,-0.2 -0.956 53.7-145.4-126.8 114.1 -3.5 -11.6 4.9 74 606 A E - 0 0 93 -2,-0.5 2,-0.3 -5,-0.3 -5,-0.2 -0.488 17.1-162.7 -76.6 144.5 -6.6 -9.5 4.2 75 607 A I - 0 0 0 -7,-0.3 -8,-1.2 -10,-0.2 2,-0.7 -0.921 17.0-136.8-128.7 154.3 -6.7 -5.9 5.2 76 608 A D - 0 0 57 -65,-1.1 2,-0.7 -2,-0.3 -65,-0.2 -0.863 21.6-174.5-114.6 97.8 -9.4 -3.3 5.7 77 609 A V + 0 0 1 -2,-0.7 2,-0.3 -15,-0.2 -11,-0.2 -0.824 18.2 154.5 -96.1 115.2 -8.4 0.1 4.2 78 610 A R E -B 9 0A 140 -69,-1.8 -69,-2.2 -2,-0.7 2,-0.3 -0.823 48.6 -79.4-132.6 171.7 -10.9 2.9 4.9 79 611 A I E -B 8 0A 65 -2,-0.3 2,-0.8 -71,-0.2 -71,-0.2 -0.578 36.4-151.8 -76.4 129.9 -10.9 6.7 5.2 80 612 A D E > -B 7 0A 48 -73,-1.0 3,-0.6 -2,-0.3 -73,-0.6 -0.845 14.5-164.1-106.8 98.6 -9.7 8.0 8.5 81 613 A R T 3 S+ 0 0 173 -2,-0.8 -75,-0.0 1,-0.2 0, 0.0 -0.322 70.3 12.6 -76.9 162.1 -11.4 11.3 9.3 82 614 A N T 3 S+ 0 0 161 1,-0.1 -1,-0.2 -2,-0.1 -76,-0.1 0.856 79.5 154.8 36.4 49.5 -10.1 13.8 12.0 83 615 A A < + 0 0 57 -3,-0.6 2,-0.2 -76,-0.1 -1,-0.1 0.948 61.5 18.4 -68.5 -50.6 -6.9 11.7 12.0 84 616 A S S S+ 0 0 104 -77,-0.0 -77,-0.0 1,-0.0 -1,-0.0 -0.716 72.4 106.2-118.3 169.7 -4.6 14.5 13.3 85 617 A G - 0 0 51 -2,-0.2 3,-0.2 -3,-0.0 -1,-0.0 0.562 28.2-172.2 121.3 84.4 -5.2 17.9 15.0 86 618 A P S S+ 0 0 145 0, 0.0 2,-0.6 0, 0.0 -2,-0.0 0.817 84.5 45.2 -69.8 -31.9 -4.4 18.4 18.7 87 619 A S + 0 0 106 2,-0.0 2,-0.9 0, 0.0 0, 0.0 -0.913 64.9 179.5-120.1 105.2 -6.0 21.8 18.7 88 620 A S 0 0 111 -2,-0.6 -3,-0.0 -3,-0.2 0, 0.0 -0.734 360.0 360.0-106.2 83.5 -9.4 22.1 17.0 89 621 A G 0 0 125 -2,-0.9 -1,-0.1 0, 0.0 -2,-0.0 0.391 360.0 360.0 46.0 360.0 -10.4 25.7 17.4