==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 23-MAR-06 2DHG . COMPND 2 MOLECULE: TRNA SELENOCYSTEINE ASSOCIATED PROTEIN (SECP43); . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.IMAI,K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 104 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7704.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 55 52.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 15.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 8.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 17 16.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 87 A G 0 0 125 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -45.7 5.3 7.3 -5.7 2 88 A S + 0 0 120 3,-0.0 2,-0.1 2,-0.0 0, 0.0 -0.181 360.0 169.7 -89.2 42.0 1.5 8.0 -5.6 3 89 A S + 0 0 119 -2,-0.5 0, 0.0 1,-0.1 0, 0.0 -0.353 37.2 88.2 -58.4 123.5 2.0 10.7 -3.0 4 90 A G + 0 0 71 1,-0.2 2,-0.3 -2,-0.1 -1,-0.1 0.418 52.7 103.1 149.2 49.1 -1.2 12.6 -2.6 5 91 A S - 0 0 87 3,-0.0 2,-1.6 0, 0.0 -1,-0.2 -0.833 49.6-153.3-155.3 111.0 -3.5 11.1 0.0 6 92 A S S S- 0 0 135 -2,-0.3 0, 0.0 1,-0.3 0, 0.0 -0.614 87.9 -22.7 -86.3 82.0 -4.1 12.4 3.6 7 93 A G S S- 0 0 69 -2,-1.6 -1,-0.3 2,-0.0 0, 0.0 0.973 84.5-162.8 80.1 69.1 -5.1 9.1 5.3 8 94 A P - 0 0 60 0, 0.0 2,-0.4 0, 0.0 -3,-0.0 0.082 15.8-108.3 -69.7-173.3 -6.3 6.8 2.5 9 95 A E - 0 0 87 2,-0.0 2,-0.4 48,-0.0 50,-0.1 -0.955 17.4-163.3-126.1 143.7 -8.4 3.7 3.0 10 96 A Y + 0 0 75 48,-0.7 48,-0.4 -2,-0.4 2,-0.2 -0.768 22.8 166.6-128.1 86.8 -7.5 -0.0 2.6 11 97 A S - 0 0 26 -2,-0.4 76,-0.5 76,-0.2 2,-0.4 -0.583 22.7-141.0 -97.9 161.7 -10.6 -2.2 2.3 12 98 A L E -AB 56 86A 0 44,-1.4 44,-1.9 -2,-0.2 2,-0.7 -0.955 11.7-128.0-125.8 143.6 -10.8 -5.9 1.2 13 99 A F E -A 55 0A 66 72,-2.0 72,-0.4 -2,-0.4 2,-0.3 -0.801 29.2-171.9 -93.5 115.8 -13.3 -7.7 -1.0 14 100 A V E +A 54 0A 0 40,-2.3 40,-2.9 -2,-0.7 2,-0.2 -0.807 5.5 177.0-108.1 148.5 -14.7 -10.8 0.7 15 101 A G E +A 53 0A 5 -2,-0.3 68,-0.3 38,-0.3 38,-0.3 -0.772 50.2 51.8-137.7-177.4 -16.9 -13.4 -0.9 16 102 A D + 0 0 81 36,-1.0 2,-0.9 -2,-0.2 37,-0.2 0.929 64.7 171.3 50.9 51.8 -18.6 -16.8 -0.3 17 103 A L - 0 0 6 35,-1.4 -1,-0.2 -3,-0.1 36,-0.2 -0.815 30.2-130.7 -98.3 102.6 -20.2 -15.5 3.0 18 104 A T > - 0 0 15 -2,-0.9 3,-1.7 62,-0.2 34,-0.2 -0.040 19.7-115.2 -47.6 149.9 -22.7 -18.0 4.3 19 105 A P T 3 S+ 0 0 96 0, 0.0 31,-0.3 0, 0.0 -1,-0.2 0.428 113.9 65.9 -69.8 3.0 -26.1 -16.6 5.3 20 106 A D T 3 S+ 0 0 133 29,-0.1 2,-0.3 2,-0.1 -2,-0.1 0.601 87.1 81.3 -98.3 -16.5 -25.3 -17.6 8.8 21 107 A V < - 0 0 3 -3,-1.7 2,-0.2 56,-0.1 29,-0.2 -0.682 59.1-176.4 -93.4 145.6 -22.4 -15.1 9.2 22 108 A D >> - 0 0 85 -2,-0.3 4,-2.2 1,-0.1 3,-0.9 -0.716 43.0 -89.7-129.8-179.7 -22.9 -11.5 10.0 23 109 A D H 3> S+ 0 0 92 1,-0.2 4,-2.5 -2,-0.2 5,-0.3 0.943 117.9 66.8 -57.8 -51.1 -20.9 -8.2 10.4 24 110 A G H 3> S+ 0 0 39 1,-0.2 4,-1.2 2,-0.2 -1,-0.2 0.803 111.4 36.9 -39.9 -36.2 -20.3 -8.8 14.1 25 111 A M H <> S+ 0 0 85 -3,-0.9 4,-3.0 2,-0.2 5,-0.4 0.952 107.5 60.2 -82.8 -59.3 -18.2 -11.8 13.0 26 112 A L H X S+ 0 0 1 -4,-2.2 4,-0.9 1,-0.2 5,-0.2 0.832 109.7 48.4 -36.1 -44.0 -16.6 -10.5 9.9 27 113 A Y H >X S+ 0 0 96 -4,-2.5 4,-3.0 13,-0.2 3,-1.0 0.986 116.2 39.1 -63.6 -61.2 -15.1 -7.8 12.1 28 114 A E H 3X S+ 0 0 127 -4,-1.2 4,-2.9 -5,-0.3 5,-0.4 0.953 107.9 62.3 -54.2 -55.7 -13.8 -10.1 14.9 29 115 A F H 3X S+ 0 0 40 -4,-3.0 4,-0.6 1,-0.2 -1,-0.3 0.792 121.1 27.3 -41.1 -32.3 -12.7 -12.8 12.4 30 116 A F H XX S+ 0 0 0 -3,-1.0 4,-3.1 -4,-0.9 3,-0.9 0.893 114.9 55.9 -95.2 -68.2 -10.3 -10.1 11.1 31 117 A V H 3< S+ 0 0 37 -4,-3.0 -3,-0.2 1,-0.3 -2,-0.2 0.763 108.5 57.6 -36.7 -30.1 -9.6 -7.7 14.0 32 118 A K H 3< S+ 0 0 174 -4,-2.9 -1,-0.3 -5,-0.4 -2,-0.2 0.963 112.7 34.4 -68.8 -54.0 -8.5 -10.9 15.7 33 119 A V H << S+ 0 0 63 -3,-0.9 -2,-0.2 -4,-0.6 -1,-0.2 0.818 133.8 30.3 -70.7 -31.5 -5.8 -11.9 13.2 34 120 A Y >< - 0 0 10 -4,-3.1 3,-1.1 1,-0.1 -1,-0.3 -0.948 61.7-161.0-135.8 114.5 -5.0 -8.2 12.5 35 121 A P T 3 S+ 0 0 115 0, 0.0 -4,-0.1 0, 0.0 -3,-0.1 0.461 88.0 76.5 -69.8 0.5 -5.3 -5.5 15.1 36 122 A S T 3 + 0 0 21 -6,-0.1 23,-2.7 24,-0.1 24,-0.6 0.101 67.6 125.4 -98.2 21.0 -5.3 -3.0 12.3 37 123 A C E < -C 58 0A 11 -3,-1.1 21,-0.3 21,-0.3 3,-0.1 -0.654 40.5-171.7 -84.7 134.8 -8.9 -3.8 11.4 38 124 A R E - 0 0 163 19,-2.5 2,-0.2 -2,-0.3 20,-0.2 0.826 60.9 -53.5 -91.9 -38.9 -11.4 -0.9 11.2 39 125 A G E -C 57 0A 20 18,-1.0 18,-1.6 -12,-0.1 2,-0.4 -0.803 46.3-107.6 166.0 152.3 -14.6 -3.0 10.9 40 126 A G E -C 56 0A 14 -2,-0.2 2,-0.4 16,-0.2 16,-0.2 -0.782 25.4-168.0-101.7 143.0 -16.4 -5.7 8.9 41 127 A K E -C 55 0A 130 14,-2.0 14,-3.0 -2,-0.4 2,-0.5 -0.991 1.8-166.6-132.8 127.4 -19.2 -5.1 6.5 42 128 A V E -C 54 0A 15 -2,-0.4 12,-0.2 12,-0.2 -19,-0.1 -0.951 19.6-130.4-116.8 127.2 -21.5 -7.7 4.9 43 129 A V E - 0 0 26 10,-1.5 8,-1.5 -2,-0.5 9,-0.5 -0.458 27.0-168.7 -73.9 143.6 -23.8 -7.0 2.0 44 130 A L E -C 50 0A 76 6,-0.3 6,-0.2 -2,-0.1 2,-0.1 -0.871 15.9-118.5-130.6 163.8 -27.4 -8.1 2.3 45 131 A D > - 0 0 89 4,-1.3 3,-1.4 -2,-0.3 5,-0.0 -0.375 47.7 -81.9 -94.7 176.2 -30.5 -8.4 -0.0 46 132 A Q T 3 S+ 0 0 194 1,-0.3 -1,-0.0 2,-0.1 -2,-0.0 0.850 135.6 48.6 -44.3 -40.4 -33.8 -6.7 0.1 47 133 A T T 3 S- 0 0 108 2,-0.1 -1,-0.3 1,-0.0 -3,-0.0 0.792 121.6-111.1 -72.4 -28.6 -34.8 -9.3 2.7 48 134 A G < + 0 0 38 -3,-1.4 2,-0.4 1,-0.3 -2,-0.1 0.640 68.6 141.1 105.0 20.4 -31.7 -8.7 4.6 49 135 A V - 0 0 78 1,-0.1 -4,-1.3 2,-0.0 -1,-0.3 -0.812 64.8 -95.9 -99.6 134.7 -29.9 -12.0 4.0 50 136 A S E - C 0 44A 13 -2,-0.4 -6,-0.3 -31,-0.3 4,-0.1 -0.230 28.8-151.2 -48.6 112.9 -26.2 -12.2 3.3 51 137 A K E - 0 0 110 -8,-1.5 -1,-0.2 2,-0.3 -7,-0.1 0.797 52.1 -94.1 -58.7 -28.6 -25.9 -12.2 -0.5 52 138 A G E S+ 0 0 19 -9,-0.5 -35,-1.4 1,-0.5 -36,-1.0 0.523 96.3 57.8 122.8 15.3 -22.7 -14.2 -0.0 53 139 A Y E +A 15 0A 73 -10,-0.4 -10,-1.5 -38,-0.3 -1,-0.5 -0.977 48.2 156.8-161.9 168.0 -20.0 -11.4 -0.0 54 140 A G E -AC 14 42A 0 -40,-2.9 -40,-2.3 -2,-0.3 2,-0.3 -0.884 28.7-106.0-169.6-160.0 -18.9 -8.2 1.7 55 141 A F E -AC 13 41A 71 -14,-3.0 -14,-2.0 -2,-0.3 2,-0.2 -0.994 18.1-157.9-153.7 148.6 -16.0 -5.9 2.4 56 142 A V E -AC 12 40A 0 -44,-1.9 -44,-1.4 -2,-0.3 2,-0.3 -0.755 9.8-137.7-123.3 170.6 -13.8 -5.0 5.3 57 143 A K E - C 0 39A 105 -18,-1.6 -19,-2.5 -2,-0.2 -18,-1.0 -0.917 15.9-175.6-129.7 156.1 -11.6 -2.0 6.4 58 144 A F E - C 0 37A 5 -48,-0.4 -48,-0.7 -2,-0.3 -21,-0.3 -0.895 27.3-142.8-143.1 171.6 -8.2 -1.6 7.9 59 145 A T S S+ 0 0 73 -23,-2.7 2,-0.5 -2,-0.3 -22,-0.1 0.678 87.4 55.2-108.3 -28.8 -5.8 1.1 9.2 60 146 A D > - 0 0 59 -24,-0.6 4,-1.8 1,-0.1 -1,-0.2 -0.933 60.9-159.1-113.1 128.4 -2.5 -0.3 8.0 61 147 A E H > S+ 0 0 62 -2,-0.5 4,-1.7 1,-0.2 5,-0.3 0.874 91.6 64.8 -69.4 -38.4 -1.8 -1.2 4.3 62 148 A L H > S+ 0 0 114 1,-0.2 4,-1.4 2,-0.2 -1,-0.2 0.897 109.2 39.2 -51.0 -44.8 1.0 -3.5 5.2 63 149 A E H > S+ 0 0 41 2,-0.2 4,-2.5 1,-0.2 5,-0.3 0.902 103.5 70.1 -73.2 -42.9 -1.5 -5.8 7.0 64 150 A Q H X S+ 0 0 11 -4,-1.8 4,-1.4 1,-0.2 3,-0.3 0.895 107.7 36.8 -38.7 -57.9 -4.2 -5.3 4.4 65 151 A K H X S+ 0 0 104 -4,-1.7 4,-1.7 1,-0.2 5,-0.4 0.942 108.9 63.2 -63.2 -49.3 -2.2 -7.3 1.9 66 152 A R H X S+ 0 0 138 -4,-1.4 4,-2.8 -5,-0.3 -1,-0.2 0.850 105.4 48.4 -43.4 -41.1 -0.9 -9.8 4.5 67 153 A A H X>S+ 0 0 0 -4,-2.5 5,-1.1 -3,-0.3 4,-1.0 0.914 101.0 62.8 -68.0 -44.3 -4.5 -10.8 5.0 68 154 A L H <5S+ 0 0 23 -4,-1.4 16,-0.3 -3,-0.3 -1,-0.2 0.866 119.3 27.7 -48.5 -40.6 -5.2 -11.2 1.3 69 155 A T H <5S+ 0 0 102 -4,-1.7 -1,-0.2 2,-0.1 -2,-0.2 0.800 132.6 37.9 -91.4 -34.7 -2.6 -14.0 1.3 70 156 A E H <5S+ 0 0 133 -4,-2.8 -3,-0.2 -5,-0.4 -2,-0.2 0.972 123.9 36.1 -79.6 -65.1 -2.9 -15.1 4.9 71 157 A C T ><5S+ 0 0 13 -4,-1.0 3,-1.4 -5,-0.2 11,-0.3 0.592 90.5 141.3 -65.1 -8.7 -6.7 -14.8 5.5 72 158 A Q T 3