==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER IMMUNE SYSTEM 24-MAR-06 2DHK . COMPND 2 MOLECULE: TBC1 DOMAIN FAMILY MEMBER 2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR H.LI,N.TOCHIO,S.KOSHIBA,T.HARADA,S.WATANABE,T.KIGAWA, . 119 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8660.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 73 61.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 31 26.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 0.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 10.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 7.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 18 15.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 134 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-101.6 -20.8 10.9 13.6 2 2 A S + 0 0 130 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.871 360.0 152.9-117.9 150.7 -17.1 11.5 13.9 3 3 A S + 0 0 129 -2,-0.3 2,-0.8 2,-0.1 0, 0.0 -0.971 36.7 51.0-163.0 171.0 -15.0 12.3 17.0 4 4 A G S S- 0 0 72 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.837 101.1 -11.9 100.3-108.6 -11.5 12.0 18.5 5 5 A S - 0 0 103 -2,-0.8 2,-0.3 3,-0.0 -2,-0.1 -0.974 59.0-132.7-134.9 148.5 -8.7 13.2 16.2 6 6 A S S S+ 0 0 130 -2,-0.3 3,-0.0 1,-0.2 -2,-0.0 -0.702 76.1 55.3 -99.9 151.7 -8.5 14.1 12.5 7 7 A G + 0 0 68 -2,-0.3 2,-0.4 1,-0.1 -1,-0.2 0.867 48.6 161.9 96.1 47.9 -5.9 12.9 10.1 8 8 A K + 0 0 194 -3,-0.1 -1,-0.1 2,-0.0 -2,-0.0 -0.208 21.9 165.5 -91.7 43.1 -6.0 9.2 10.4 9 9 A K - 0 0 137 -2,-0.4 2,-0.7 1,-0.1 25,-0.1 0.099 42.8-104.3 -50.6 171.9 -4.2 8.7 7.0 10 10 A L + 0 0 5 23,-0.1 23,-2.6 88,-0.0 2,-0.3 -0.887 59.7 137.1-110.2 105.0 -2.8 5.3 6.1 11 11 A C E +A 32 0A 50 -2,-0.7 2,-0.2 21,-0.2 21,-0.2 -0.931 12.0 143.1-141.7 164.2 1.0 5.1 6.5 12 12 A G E -A 31 0A 15 19,-2.6 19,-1.9 -2,-0.3 2,-0.5 -0.851 47.0 -90.6 168.5 155.9 3.7 2.8 7.8 13 13 A Y E +A 30 0A 140 -2,-0.2 2,-0.2 17,-0.2 17,-0.2 -0.727 46.0 175.8 -88.2 126.8 7.2 1.4 7.3 14 14 A L E -A 29 0A 5 15,-2.5 15,-3.0 -2,-0.5 2,-0.5 -0.751 28.9-117.2-123.9 171.7 7.4 -1.8 5.2 15 15 A S E -AB 28 85A 23 70,-1.4 70,-1.3 -2,-0.2 2,-0.4 -0.948 21.7-151.6-116.9 118.6 10.2 -4.0 3.8 16 16 A K E -AB 27 84A 20 11,-1.9 11,-1.2 -2,-0.5 68,-0.2 -0.729 14.6-136.2 -90.4 132.9 10.6 -4.3 0.0 17 17 A F - 0 0 61 66,-1.9 66,-0.2 -2,-0.4 9,-0.2 -0.334 50.9 -52.5 -81.6 166.5 12.1 -7.6 -1.3 18 18 A G S S+ 0 0 29 -2,-0.1 2,-0.3 2,-0.0 -1,-0.2 -0.090 77.6 148.0 -40.6 120.2 14.8 -7.8 -4.0 19 19 A G - 0 0 29 4,-0.3 4,-0.1 -3,-0.1 -3,-0.0 -0.824 60.7 -7.0-165.6 122.0 13.5 -5.8 -6.9 20 20 A K S S+ 0 0 207 -2,-0.3 4,-0.0 1,-0.2 -2,-0.0 0.926 106.0 104.0 59.4 47.2 15.2 -3.7 -9.6 21 21 A G S S- 0 0 49 1,-0.1 -1,-0.2 2,-0.1 -3,-0.0 -0.943 83.4-107.2-150.3 171.0 18.6 -4.0 -8.0 22 22 A P S S+ 0 0 134 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 0.844 103.1 26.4 -69.8 -35.2 22.0 -5.8 -8.2 23 23 A I S S- 0 0 126 -4,-0.1 2,-0.3 -3,-0.0 -4,-0.3 -0.746 79.9-117.6-124.0 172.1 21.2 -8.0 -5.2 24 24 A R + 0 0 201 -2,-0.2 2,-0.3 -6,-0.2 -7,-0.1 -0.848 52.3 95.9-113.2 149.0 18.2 -9.4 -3.5 25 25 A G - 0 0 29 -2,-0.3 2,-0.3 2,-0.0 -6,-0.1 -0.877 66.8 -65.7 156.3 172.3 16.9 -8.8 0.1 26 26 A W - 0 0 105 -2,-0.3 2,-0.4 -9,-0.2 -9,-0.2 -0.685 41.4-169.8 -91.0 141.5 14.6 -6.8 2.3 27 27 A K E -A 16 0A 63 -11,-1.2 -11,-1.9 -2,-0.3 2,-0.8 -0.996 29.6-114.4-135.1 132.0 15.0 -3.1 2.8 28 28 A S E +A 15 0A 90 -2,-0.4 2,-0.4 -13,-0.2 -13,-0.2 -0.489 47.4 172.4 -66.1 104.3 13.3 -0.7 5.3 29 29 A R E -A 14 0A 45 -15,-3.0 -15,-2.5 -2,-0.8 2,-0.6 -0.904 32.7-122.2-118.6 146.0 11.3 1.6 3.1 30 30 A W E -AC 13 43A 32 13,-2.1 13,-2.4 -2,-0.4 2,-0.4 -0.758 29.8-169.7 -89.6 121.7 8.7 4.2 4.1 31 31 A F E +AC 12 42A 0 -19,-1.9 -19,-2.6 -2,-0.6 2,-0.3 -0.895 10.3 167.8-114.0 141.5 5.2 3.6 2.6 32 32 A F E -AC 11 41A 39 9,-3.2 9,-1.7 -2,-0.4 -21,-0.2 -0.974 27.7-127.5-153.9 136.1 2.3 6.0 2.6 33 33 A Y E - C 0 40A 26 -23,-2.6 2,-0.4 -2,-0.3 7,-0.2 -0.480 20.5-139.6 -82.5 153.8 -1.1 6.2 0.8 34 34 A D E > - C 0 39A 36 5,-2.2 5,-0.5 -2,-0.1 4,-0.4 -0.952 12.3-163.7-118.8 133.6 -2.2 9.3 -1.1 35 35 A E T 5S+ 0 0 155 -2,-0.4 -1,-0.1 3,-0.2 5,-0.1 0.016 84.3 66.8-100.4 26.2 -5.7 10.7 -1.1 36 36 A R T 5S+ 0 0 222 3,-0.2 -1,-0.1 0, 0.0 -2,-0.0 0.763 118.4 11.6-109.9 -47.2 -5.1 12.9 -4.1 37 37 A K T 5S- 0 0 133 2,-0.2 -2,-0.1 0, 0.0 3,-0.1 0.278 100.1-116.2-115.1 6.2 -4.6 10.4 -7.0 38 38 A C T 5S+ 0 0 52 -4,-0.4 20,-0.7 1,-0.2 19,-0.6 0.914 74.2 126.1 58.4 45.1 -5.8 7.3 -5.0 39 39 A Q E < -CD 34 56A 41 -5,-0.5 -5,-2.2 17,-0.2 2,-0.8 -0.907 65.2-113.6-131.9 159.6 -2.4 5.7 -5.3 40 40 A L E -CD 33 55A 0 15,-2.2 15,-1.9 -2,-0.3 2,-0.3 -0.834 34.8-171.1 -98.1 109.5 0.2 4.2 -2.8 41 41 A Y E -CD 32 54A 28 -9,-1.7 -9,-3.2 -2,-0.8 2,-0.3 -0.750 4.7-178.9-101.0 147.0 3.4 6.3 -2.7 42 42 A Y E +CD 31 53A 19 11,-2.3 11,-1.8 -2,-0.3 10,-0.8 -0.999 3.1 176.5-146.0 145.2 6.6 5.3 -0.9 43 43 A S E -C 30 0A 0 -13,-2.4 -13,-2.1 -2,-0.3 3,-0.1 -0.716 47.4 -89.2-135.0-175.1 10.0 6.8 -0.3 44 44 A R S S- 0 0 153 -2,-0.2 2,-0.3 -15,-0.2 -14,-0.1 0.919 104.9 -3.8 -65.9 -45.1 13.3 6.2 1.5 45 45 A T S > S- 0 0 55 -16,-0.1 3,-0.8 -15,-0.1 -1,-0.2 -0.917 71.4-105.4-144.0 168.9 12.1 7.9 4.7 46 46 A A T 3 S+ 0 0 50 -2,-0.3 -1,-0.0 1,-0.2 -2,-0.0 0.749 119.5 58.8 -67.7 -23.7 9.2 9.9 6.1 47 47 A Q T 3 S+ 0 0 181 1,-0.2 2,-2.3 2,-0.1 -1,-0.2 0.712 83.2 86.5 -77.6 -21.3 11.3 13.0 5.8 48 48 A D < - 0 0 62 -3,-0.8 -1,-0.2 1,-0.2 4,-0.1 -0.432 58.7-178.7 -79.6 67.0 11.6 12.4 2.0 49 49 A A + 0 0 79 -2,-2.3 -1,-0.2 2,-0.1 -2,-0.1 0.802 62.3 88.1 -34.1 -39.8 8.4 14.2 1.2 50 50 A N S S- 0 0 133 -3,-0.2 2,-0.3 1,-0.1 -1,-0.0 -0.536 84.7-133.1 -70.4 111.9 9.2 13.3 -2.4 51 51 A P - 0 0 55 0, 0.0 -8,-0.3 0, 0.0 3,-0.1 -0.502 4.7-148.4 -69.8 124.8 7.8 9.8 -3.0 52 52 A L S S- 0 0 80 -10,-0.8 2,-0.3 -2,-0.3 -9,-0.2 0.944 74.3 -17.6 -57.3 -51.4 10.2 7.5 -4.7 53 53 A D E -D 42 0A 80 -11,-1.8 -11,-2.3 -3,-0.0 2,-0.3 -0.934 60.7-139.0-150.2 171.0 7.4 5.6 -6.6 54 54 A S E -D 41 0A 32 -2,-0.3 2,-0.4 -13,-0.2 -13,-0.2 -0.974 3.1-155.3-138.2 151.5 3.7 5.0 -6.6 55 55 A I E -D 40 0A 6 -15,-1.9 -15,-2.2 -2,-0.3 2,-0.6 -0.948 22.5-128.6-132.8 113.5 1.4 2.0 -7.1 56 56 A D E > -D 39 0A 63 -2,-0.4 3,-0.6 -17,-0.2 -17,-0.2 -0.428 21.8-174.1 -61.5 108.4 -2.2 2.4 -8.3 57 57 A L G > S+ 0 0 2 -19,-0.6 3,-2.8 -2,-0.6 -1,-0.2 0.764 71.6 83.4 -75.6 -26.0 -4.2 0.4 -5.8 58 58 A S G 3 S+ 0 0 24 -20,-0.7 -1,-0.2 1,-0.3 -19,-0.1 0.839 109.8 23.1 -45.0 -38.2 -7.4 0.9 -7.8 59 59 A S G < S+ 0 0 77 -3,-0.6 2,-0.4 2,-0.0 -1,-0.3 -0.149 105.0 110.5-122.7 36.6 -6.3 -2.0 -9.9 60 60 A A < - 0 0 1 -3,-2.8 2,-0.5 17,-0.2 17,-0.2 -0.901 50.7-153.6-115.9 143.1 -4.0 -3.7 -7.4 61 61 A V E -E 76 0A 73 15,-2.9 15,-3.1 -2,-0.4 2,-0.3 -0.954 9.4-149.1-119.9 117.1 -4.5 -7.0 -5.6 62 62 A F E +E 75 0A 27 -2,-0.5 2,-0.3 13,-0.3 13,-0.2 -0.663 22.3 175.6 -85.6 135.1 -2.9 -7.7 -2.2 63 63 A D E -E 74 0A 74 11,-2.8 11,-2.7 -2,-0.3 2,-0.4 -0.888 26.8-118.1-134.8 165.3 -2.0 -11.3 -1.4 64 64 A C E -E 73 0A 61 -2,-0.3 9,-0.3 9,-0.3 4,-0.1 -0.879 26.5-126.6-109.3 137.5 -0.2 -13.2 1.4 65 65 A K > - 0 0 91 7,-1.2 3,-1.1 -2,-0.4 7,-0.1 -0.117 29.8-103.2 -71.1 173.7 2.9 -15.2 1.0 66 66 A A T 3 S+ 0 0 94 1,-0.3 3,-0.4 2,-0.1 -1,-0.1 0.867 122.9 50.4 -66.9 -37.2 3.3 -18.8 2.0 67 67 A D T > + 0 0 100 1,-0.2 3,-2.2 2,-0.1 4,-0.4 -0.121 67.6 137.5 -93.3 36.7 5.3 -17.9 5.1 68 68 A A G X + 0 0 8 -3,-1.1 3,-1.2 1,-0.3 -1,-0.2 0.722 47.4 93.1 -54.2 -20.7 2.7 -15.3 6.1 69 69 A E G 3 S+ 0 0 149 -3,-0.4 20,-0.5 1,-0.3 -1,-0.3 0.750 92.1 41.8 -45.5 -24.8 3.3 -16.7 9.6 70 70 A E G < S- 0 0 111 -3,-2.2 -1,-0.3 18,-0.2 -2,-0.2 0.694 130.5 -94.7 -95.8 -24.6 5.7 -13.8 9.9 71 71 A G < + 0 0 0 -3,-1.2 15,-2.9 -4,-0.4 2,-0.4 0.803 64.1 158.3 109.1 56.3 3.6 -11.3 8.1 72 72 A I E + F 0 85A 11 13,-0.3 -7,-1.2 -7,-0.1 2,-0.3 -0.871 8.4 167.8-112.8 144.7 4.4 -11.2 4.4 73 73 A F E -EF 64 84A 0 11,-1.8 11,-0.6 -2,-0.4 2,-0.3 -0.905 19.7-145.4-145.4 171.9 2.3 -9.9 1.6 74 74 A E E -EF 63 83A 21 -11,-2.7 -11,-2.8 -2,-0.3 2,-0.8 -0.989 9.1-143.8-147.6 135.1 2.4 -9.0 -2.1 75 75 A I E -EF 62 82A 2 7,-1.5 7,-2.2 -2,-0.3 2,-0.6 -0.843 17.4-158.0-103.1 102.4 0.7 -6.3 -4.2 76 76 A K E +E 61 0A 66 -15,-3.1 -15,-2.9 -2,-0.8 5,-0.2 -0.687 20.6 171.0 -82.6 120.0 -0.1 -7.6 -7.7 77 77 A T - 0 0 16 -2,-0.6 -17,-0.2 -17,-0.2 -20,-0.1 -0.920 47.0-118.3-130.0 155.4 -0.6 -4.8 -10.2 78 78 A P S S+ 0 0 116 0, 0.0 3,-0.1 0, 0.0 -18,-0.1 0.427 116.4 44.0 -69.8 3.0 -1.0 -4.6 -14.0 79 79 A S S S- 0 0 88 1,-0.2 2,-0.3 -23,-0.1 -3,-0.0 0.751 130.7 -17.4-112.4 -49.3 2.2 -2.5 -14.0 80 80 A R - 0 0 112 -5,-0.1 2,-0.6 2,-0.0 -1,-0.2 -0.846 59.1-124.0-166.2 125.1 4.6 -4.3 -11.6 81 81 A V - 0 0 85 -2,-0.3 2,-0.2 -5,-0.2 -5,-0.2 -0.609 33.5-162.7 -75.3 113.8 4.1 -6.9 -8.9 82 82 A I E - F 0 75A 6 -7,-2.2 -7,-1.5 -2,-0.6 2,-0.5 -0.635 9.8-149.8 -97.2 156.0 5.6 -5.6 -5.6 83 83 A T E + F 0 74A 26 -9,-0.2 -66,-1.9 -2,-0.2 2,-0.4 -0.900 24.1 163.9-130.6 104.0 6.5 -7.6 -2.6 84 84 A L E -BF 16 73A 1 -11,-0.6 -11,-1.8 -2,-0.5 2,-0.3 -0.927 17.3-157.9-121.5 145.2 6.2 -6.0 0.9 85 85 A K E -BF 15 72A 42 -70,-1.3 -70,-1.4 -2,-0.4 -13,-0.3 -0.921 8.3-141.7-122.6 147.7 6.1 -7.5 4.3 86 86 A A - 0 0 5 -15,-2.9 -72,-0.1 -2,-0.3 5,-0.0 -0.409 33.4 -95.3 -98.4 176.9 4.8 -6.2 7.6 87 87 A A S S- 0 0 88 -74,-0.2 2,-0.2 -2,-0.1 -1,-0.1 0.984 98.7 -6.0 -54.4 -68.0 6.1 -6.5 11.2 88 88 A T S > S- 0 0 79 -3,-0.0 4,-1.4 1,-0.0 3,-0.4 -0.601 82.2 -89.7-121.4-177.1 4.0 -9.5 12.3 89 89 A K H > S+ 0 0 95 -20,-0.5 4,-1.0 1,-0.2 -18,-0.1 0.839 129.0 48.9 -63.4 -33.4 1.3 -11.7 10.9 90 90 A Q H > S+ 0 0 158 2,-0.2 4,-0.8 1,-0.1 -1,-0.2 0.697 103.3 65.1 -79.0 -20.1 -1.3 -9.3 12.4 91 91 A A H >> S+ 0 0 24 -3,-0.4 3,-1.8 2,-0.2 4,-1.2 0.994 100.3 45.1 -65.1 -64.6 0.5 -6.3 10.9 92 92 A M H >X S+ 0 0 4 -4,-1.4 4,-3.0 1,-0.3 3,-0.7 0.898 102.9 67.3 -45.8 -48.8 -0.1 -7.1 7.2 93 93 A L H 3X S+ 0 0 85 -4,-1.0 4,-2.3 1,-0.3 -1,-0.3 0.842 100.4 50.7 -41.4 -40.8 -3.7 -7.9 8.0 94 94 A Y H S+ 0 0 84 -4,-1.3 4,-2.4 -5,-0.3 5,-0.6 0.958 95.9 65.3 -61.3 -53.6 -8.7 -2.2 0.3 101 101 A M H X5S+ 0 0 62 -4,-1.7 4,-2.2 -3,-0.5 -1,-0.2 0.854 103.9 48.6 -35.3 -50.6 -11.0 0.4 2.0 102 102 A K H X5S+ 0 0 66 -4,-1.3 4,-1.7 -3,-0.2 -1,-0.2 0.965 122.1 32.4 -57.5 -56.6 -9.4 3.0 -0.3 103 103 A R H X5S+ 0 0 79 -4,-1.5 4,-1.6 2,-0.2 5,-0.2 0.994 117.9 52.0 -64.9 -64.9 -9.9 0.9 -3.5 104 104 A W H X5S+ 0 0 113 -4,-2.4 4,-1.6 1,-0.2 3,-0.5 0.864 108.4 55.4 -38.3 -49.3 -13.1 -0.9 -2.5 105 105 A E H >X