==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER METAL BINDING PROTEIN 27-MAR-06 2DI2 . COMPND 2 MOLECULE: NUCLEOCAPSID PROTEIN P7; . SOURCE 2 SYNTHETIC: YES; . AUTHOR T.MATSUI,Y.KODERA,H.ENDOH,E.MIYAUCHI,H.KOMATSU,K.SATO, . 29 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3248.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 16 55.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 17.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 13.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 6.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 156 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-172.2 -6.0 -15.8 -4.8 2 2 A Q - 0 0 203 2,-0.2 3,-0.1 0, 0.0 4,-0.1 0.838 360.0 -39.5-102.9 -67.8 -6.1 -12.1 -3.8 3 3 A Q S S- 0 0 105 1,-0.2 2,-1.4 2,-0.1 0, 0.0 -0.262 77.0 -92.2-162.6 65.9 -3.4 -10.1 -5.5 4 4 A R S S+ 0 0 244 3,-0.1 -1,-0.2 0, 0.0 2,-0.2 -0.345 106.8 16.7 59.2 -91.2 -0.0 -11.9 -5.8 5 5 A K S S- 0 0 143 -2,-1.4 3,-0.1 1,-0.2 -2,-0.1 -0.537 109.1 -64.0-104.4 175.1 1.5 -10.5 -2.6 6 6 A V - 0 0 68 1,-0.2 2,-1.8 -2,-0.2 -1,-0.2 0.014 68.8 -85.7 -47.9 166.7 -0.1 -8.8 0.4 7 7 A I - 0 0 77 1,-0.1 2,-2.2 -3,-0.1 9,-0.8 -0.557 47.5-173.0 -79.4 88.0 -1.8 -5.5 -0.4 8 8 A R > - 0 0 102 -2,-1.8 6,-0.8 7,-0.2 5,-0.8 -0.167 51.0 -99.4 -78.5 51.6 1.2 -3.3 -0.0 9 9 A a T >>5 - 0 0 0 -2,-2.2 3,-4.1 8,-1.8 4,-2.1 0.873 33.5-150.2 31.9 78.6 -0.9 -0.2 -0.4 10 10 A W T 345S+ 0 0 200 1,-0.3 -1,-0.2 2,-0.2 8,-0.1 0.781 95.9 65.9 -48.3 -21.0 -0.1 0.4 -4.1 11 11 A A T 345S+ 0 0 25 3,-0.1 -1,-0.3 1,-0.1 15,-0.3 0.711 124.9 8.5 -75.3 -16.3 -0.7 4.1 -3.2 12 12 A C T <45S- 0 0 41 -3,-4.1 -2,-0.2 -4,-0.3 -3,-0.2 0.625 95.3-119.7-127.5 -53.9 2.4 3.9 -0.9 13 13 A G << + 0 0 38 -4,-2.1 2,-0.4 -5,-0.8 -4,-0.2 0.722 65.7 123.6 112.0 36.0 4.3 0.6 -1.4 14 14 A K > - 0 0 110 -6,-0.8 3,-0.8 -5,-0.3 2,-0.6 -0.986 59.8-125.2-130.8 135.4 4.2 -0.9 2.1 15 15 A E T 3 S+ 0 0 137 -2,-0.4 -7,-0.2 -7,-0.2 3,-0.1 -0.636 88.4 60.6 -78.3 118.8 2.9 -4.3 3.1 16 16 A G T 3 S+ 0 0 68 -9,-0.8 2,-0.3 -2,-0.6 -1,-0.2 0.122 98.7 32.7 154.1 -28.3 0.3 -3.9 5.9 17 17 A H S < S- 0 0 53 -3,-0.8 -8,-1.8 -10,-0.4 -1,-0.4 -0.923 71.1-110.0-146.5 172.8 -2.6 -1.7 4.5 18 18 A S >> - 0 0 20 -2,-0.3 3,-3.3 -10,-0.2 4,-0.7 -0.765 34.6-110.3-106.0 153.2 -4.6 -0.9 1.4 19 19 A A G >4 S+ 0 0 19 1,-0.3 3,-1.6 -2,-0.3 -1,-0.1 0.871 115.2 74.0 -48.9 -34.7 -4.5 2.4 -0.6 20 20 A R G 34 S+ 0 0 217 1,-0.3 -1,-0.3 3,-0.0 -3,-0.0 0.808 112.9 26.2 -51.3 -24.4 -8.0 3.0 0.8 21 21 A Q G <4 S+ 0 0 159 -3,-3.3 2,-0.4 3,-0.0 -1,-0.3 0.294 84.2 147.0-119.8 6.6 -6.2 3.7 4.1 22 22 A a << - 0 0 29 -3,-1.6 -3,-0.1 -4,-0.7 4,-0.0 -0.201 22.1-178.3 -47.2 100.5 -2.8 4.8 2.6 23 23 A R + 0 0 236 -2,-0.4 -1,-0.2 2,-0.1 -4,-0.1 0.337 57.2 92.6 -86.6 10.5 -1.9 7.4 5.3 24 24 A A - 0 0 18 4,-0.1 2,-2.7 -5,-0.1 3,-0.1 -0.899 68.7-150.5-110.3 111.9 1.3 8.2 3.3 25 25 A P - 0 0 82 0, 0.0 -13,-0.1 0, 0.0 -2,-0.1 -0.297 65.3 -73.8 -74.1 58.4 1.0 11.0 0.8 26 26 A R S S+ 0 0 204 -2,-2.7 -14,-0.1 -15,-0.3 -13,-0.0 0.869 117.3 7.1 50.9 104.5 3.6 9.4 -1.5 27 27 A R S S+ 0 0 239 2,-0.1 -15,-0.0 -15,-0.1 -3,-0.0 0.935 106.0 85.6 59.8 92.9 7.1 9.9 0.1 28 28 A Q 0 0 161 1,-0.6 -4,-0.1 -4,-0.0 -1,-0.1 -0.026 360.0 360.0-178.6 -61.7 6.4 11.3 3.6 29 29 A G 0 0 94 -6,-0.0 -1,-0.6 0, 0.0 -2,-0.1 -0.648 360.0 360.0-125.0 360.0 5.7 8.8 6.4