==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 30-MAR-06 2DIG . COMPND 2 MOLECULE: LAMIN-B RECEPTOR; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.YONEYAMA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA, . 68 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5409.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 40 58.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 32.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 19.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 117 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 79.6 -8.9 20.1 28.3 2 2 A S + 0 0 141 1,-0.2 2,-0.3 2,-0.0 0, 0.0 0.931 360.0 113.6 51.7 51.5 -12.2 18.6 27.2 3 3 A S + 0 0 111 3,-0.0 -1,-0.2 0, 0.0 2,-0.1 -0.995 36.4 56.8-152.3 145.3 -11.4 19.4 23.5 4 4 A G S S+ 0 0 63 -2,-0.3 2,-1.1 -3,-0.1 -2,-0.0 -0.488 79.2 79.5 137.0 -67.3 -10.7 17.5 20.3 5 5 A S + 0 0 130 -2,-0.1 2,-0.3 2,-0.1 -1,-0.0 -0.653 60.0 135.7 -80.5 99.8 -13.5 15.1 19.6 6 6 A S - 0 0 103 -2,-1.1 2,-0.8 2,-0.3 -3,-0.0 -0.956 59.2 -6.4-150.4 127.0 -16.2 17.2 18.0 7 7 A G S S+ 0 0 76 -2,-0.3 -2,-0.1 2,-0.0 0, 0.0 -0.828 116.5 8.2 99.0-108.3 -18.4 16.7 15.0 8 8 A M S S- 0 0 168 -2,-0.8 2,-0.9 0, 0.0 -2,-0.3 -0.856 81.1-100.6-115.1 149.5 -17.5 13.5 13.0 9 9 A P - 0 0 122 0, 0.0 2,-0.3 0, 0.0 -4,-0.1 -0.531 38.7-141.2 -69.8 101.6 -15.0 10.7 13.9 10 10 A S - 0 0 120 -2,-0.9 2,-0.5 1,-0.1 4,-0.1 -0.489 13.5-148.4 -68.0 123.3 -11.9 11.5 11.9 11 11 A R - 0 0 96 -2,-0.3 -1,-0.1 1,-0.1 26,-0.0 -0.817 21.4-122.3 -98.5 130.6 -10.3 8.3 10.6 12 12 A K S S+ 0 0 117 -2,-0.5 2,-0.3 2,-0.0 -1,-0.1 0.800 102.0 26.2 -34.6 -38.6 -6.6 8.1 10.1 13 13 A F S S- 0 0 9 6,-0.0 2,-0.2 4,-0.0 -2,-0.1 -0.932 79.5-134.9-130.9 154.3 -7.4 7.4 6.5 14 14 A A - 0 0 46 -2,-0.3 2,-0.4 1,-0.1 3,-0.3 -0.545 37.4 -83.3-102.7 170.2 -10.3 8.1 4.2 15 15 A D S S+ 0 0 124 1,-0.2 20,-0.2 -2,-0.2 3,-0.1 -0.600 113.7 6.1 -76.6 124.9 -12.3 6.0 1.8 16 16 A G S S+ 0 0 28 18,-2.1 -1,-0.2 -2,-0.4 19,-0.1 0.006 92.0 141.6 94.4 -29.4 -10.5 5.7 -1.6 17 17 A E - 0 0 114 -3,-0.3 17,-2.0 16,-0.2 2,-0.8 -0.105 53.8-124.9 -47.0 141.0 -7.5 7.6 -0.4 18 18 A V E +A 33 0A 82 15,-0.2 15,-0.2 -3,-0.1 2,-0.2 -0.821 44.4 158.2 -97.7 105.3 -4.2 6.1 -1.8 19 19 A V E -A 32 0A 4 13,-1.6 13,-3.0 -2,-0.8 2,-0.6 -0.666 45.0 -95.4-119.0 175.1 -1.8 5.2 1.1 20 20 A R E -AB 31 62A 138 42,-3.1 42,-3.1 11,-0.2 2,-0.4 -0.832 39.2-167.9 -97.3 119.5 1.2 2.9 1.5 21 21 A G E -AB 30 61A 0 9,-2.7 9,-3.0 -2,-0.6 2,-0.9 -0.865 21.3-128.7-110.5 141.8 0.4 -0.5 3.0 22 22 A R E -A 29 0A 102 38,-0.8 7,-0.2 -2,-0.4 5,-0.1 -0.755 28.3-135.4 -89.9 103.2 2.8 -3.0 4.4 23 23 A W > - 0 0 86 5,-1.7 4,-1.5 -2,-0.9 2,-0.6 -0.235 27.9-101.6 -57.1 140.9 2.0 -6.4 2.7 24 24 A P T 4 S+ 0 0 77 0, 0.0 -1,-0.1 0, 0.0 32,-0.0 -0.532 104.8 5.1 -69.7 113.2 2.0 -9.4 5.1 25 25 A G T 4 S+ 0 0 83 -2,-0.6 -2,-0.1 -3,-0.1 -3,-0.0 -0.137 119.4 72.8 106.7 -37.5 5.3 -11.3 4.7 26 26 A S T 4 S- 0 0 45 -3,-0.3 3,-0.1 2,-0.1 -3,-0.1 0.719 80.4-153.5 -81.3 -22.6 6.9 -8.8 2.3 27 27 A S < + 0 0 65 -4,-1.5 2,-0.4 1,-0.2 -5,-0.1 0.825 54.4 122.2 51.5 33.3 7.5 -6.3 5.1 28 28 A L - 0 0 91 -5,-0.4 -5,-1.7 -7,-0.1 2,-0.5 -0.987 64.8-124.8-130.0 136.6 7.4 -3.6 2.3 29 29 A Y E +A 22 0A 90 -2,-0.4 2,-0.3 -7,-0.2 -7,-0.3 -0.662 35.0 179.8 -81.7 124.8 5.1 -0.6 1.9 30 30 A Y E -A 21 0A 96 -9,-3.0 -9,-2.7 -2,-0.5 2,-0.8 -0.821 39.2 -87.9-122.8 162.7 3.3 -0.6 -1.4 31 31 A E E +A 20 0A 139 -2,-0.3 18,-0.4 -11,-0.2 2,-0.3 -0.582 60.4 161.8 -73.2 107.3 0.8 1.8 -3.1 32 32 A V E -A 19 0A 2 -13,-3.0 -13,-1.6 -2,-0.8 2,-0.3 -0.861 32.4-126.7-126.2 161.2 -2.7 0.6 -1.9 33 33 A E E -AC 18 47A 87 14,-2.2 14,-2.0 -2,-0.3 2,-0.5 -0.815 25.0-113.6-109.4 148.9 -6.2 2.1 -1.8 34 34 A I E + C 0 46A 3 -17,-2.0 -18,-2.1 -2,-0.3 12,-0.2 -0.688 41.1 159.2 -83.5 123.2 -8.5 2.3 1.2 35 35 A L E - 0 0 58 10,-2.5 2,-0.3 -2,-0.5 11,-0.2 0.800 62.6 -17.1-106.8 -52.0 -11.6 0.2 0.8 36 36 A S E - C 0 45A 60 9,-1.8 9,-2.1 -22,-0.0 -1,-0.4 -0.927 50.9-136.1-149.9 172.0 -12.9 -0.4 4.4 37 37 A H E - C 0 44A 40 -2,-0.3 2,-0.6 7,-0.3 7,-0.3 -0.917 11.8-155.1-141.7 112.0 -11.9 -0.1 8.0 38 38 A D E > - C 0 43A 61 5,-3.1 5,-0.8 -2,-0.4 -2,-0.0 -0.765 7.2-173.1 -90.1 121.7 -12.8 -2.8 10.6 39 39 A S T > 5S+ 0 0 81 -2,-0.6 3,-0.7 3,-0.2 -1,-0.2 0.831 76.6 74.7 -80.0 -34.6 -12.9 -1.5 14.2 40 40 A T T 3 5S+ 0 0 136 1,-0.3 -1,-0.2 3,-0.1 -2,-0.0 0.902 125.0 4.7 -42.4 -54.3 -13.3 -4.9 15.7 41 41 A S T 3 5S- 0 0 67 2,-0.1 -1,-0.3 -3,-0.0 -2,-0.2 0.038 101.7-114.2-121.8 23.4 -9.6 -5.7 15.1 42 42 A Q T < 5 + 0 0 66 -3,-0.7 16,-1.0 1,-0.2 2,-0.6 0.827 64.7 155.9 46.0 35.6 -8.6 -2.3 13.7 43 43 A L E < -CD 38 57A 41 -5,-0.8 -5,-3.1 14,-0.2 2,-0.4 -0.838 31.6-152.5 -97.9 120.0 -8.0 -4.1 10.4 44 44 A Y E -CD 37 56A 2 12,-2.8 12,-2.7 -2,-0.6 2,-0.8 -0.754 8.8-138.3 -93.9 134.7 -8.2 -1.9 7.3 45 45 A T E +CD 36 55A 29 -9,-2.1 -10,-2.5 -2,-0.4 -9,-1.8 -0.807 31.6 172.0 -95.7 106.1 -9.2 -3.4 4.0 46 46 A V E -CD 34 54A 0 8,-1.4 8,-1.6 -2,-0.8 2,-0.4 -0.752 24.0-134.0-112.0 159.8 -7.0 -2.1 1.2 47 47 A K E -CD 33 53A 88 -14,-2.0 -14,-2.2 -2,-0.3 6,-0.2 -0.926 14.6-146.9-116.6 138.7 -6.7 -3.0 -2.5 48 48 A Y > - 0 0 21 4,-2.1 3,-1.2 -2,-0.4 4,-0.5 -0.507 31.5-104.8 -97.5 168.1 -3.5 -3.6 -4.4 49 49 A K T 3 S+ 0 0 189 -18,-0.4 2,-0.1 1,-0.3 -1,-0.1 0.845 120.7 60.5 -59.0 -34.7 -2.7 -2.9 -8.1 50 50 A D T 3 S- 0 0 122 2,-0.1 -1,-0.3 1,-0.1 -2,-0.0 -0.033 126.1-101.1 -84.4 32.8 -2.9 -6.6 -8.7 51 51 A G S < S+ 0 0 54 -3,-1.2 2,-0.4 1,-0.2 -2,-0.2 0.942 73.6 149.7 46.5 62.0 -6.5 -6.6 -7.5 52 52 A T - 0 0 36 -4,-0.5 -4,-2.1 2,-0.0 2,-0.4 -0.990 33.7-155.9-130.0 131.2 -5.7 -8.0 -4.1 53 53 A E E +D 47 0A 122 -2,-0.4 2,-0.3 -6,-0.2 -6,-0.2 -0.892 22.5 160.2-108.6 132.9 -7.6 -7.3 -0.8 54 54 A L E -D 46 0A 42 -8,-1.6 -8,-1.4 -2,-0.4 2,-0.6 -0.897 38.8-113.7-142.2 170.7 -5.9 -7.6 2.6 55 55 A E E +D 45 0A 105 -2,-0.3 2,-0.4 -10,-0.2 -10,-0.2 -0.911 34.2 176.9-115.0 107.1 -6.3 -6.5 6.2 56 56 A L E -D 44 0A 5 -12,-2.7 -12,-2.8 -2,-0.6 5,-0.1 -0.916 30.5-114.8-112.7 134.0 -3.6 -4.2 7.5 57 57 A K E > -D 43 0A 99 -2,-0.4 4,-1.6 -14,-0.2 -14,-0.2 -0.150 33.4-104.7 -59.6 157.4 -3.7 -2.7 11.0 58 58 A E T 4 S+ 0 0 71 -16,-1.0 -1,-0.1 1,-0.2 -15,-0.1 0.816 125.6 47.4 -53.3 -31.6 -4.0 1.1 11.3 59 59 A N T 4 S+ 0 0 126 1,-0.2 -1,-0.2 3,-0.0 -2,-0.0 0.892 103.0 59.5 -77.5 -42.2 -0.3 1.1 12.1 60 60 A D T 4 S+ 0 0 58 -39,-0.1 -38,-0.8 -38,-0.0 2,-0.4 0.807 97.8 75.3 -56.0 -30.3 0.7 -1.1 9.2 61 61 A I E < +B 21 0A 0 -4,-1.6 2,-0.3 -40,-0.2 -40,-0.2 -0.700 64.3 175.8 -89.0 135.1 -0.8 1.5 7.0 62 62 A K E -B 20 0A 106 -42,-3.1 -42,-3.1 -2,-0.4 2,-0.3 -0.974 13.4-154.7-138.6 152.2 1.1 4.7 6.4 63 63 A S - 0 0 79 -2,-0.3 -44,-0.1 -44,-0.2 3,-0.1 -0.819 6.8-160.4-123.8 163.9 0.7 7.8 4.2 64 64 A G - 0 0 56 -2,-0.3 2,-0.1 1,-0.2 -1,-0.0 -0.399 43.8 -36.7-124.3-158.4 3.0 10.4 2.7 65 65 A P - 0 0 130 0, 0.0 2,-0.2 0, 0.0 -1,-0.2 -0.435 61.9-115.8 -69.8 137.6 3.0 14.0 1.3 66 66 A S - 0 0 128 -2,-0.1 2,-0.4 -3,-0.1 -3,-0.0 -0.484 32.9-170.4 -75.3 142.5 -0.0 15.0 -0.8 67 67 A S 0 0 124 -2,-0.2 -1,-0.0 1,-0.1 0, 0.0 -0.999 360.0 360.0-137.9 138.0 0.5 15.8 -4.5 68 68 A G 0 0 132 -2,-0.4 -1,-0.1 0, 0.0 -2,-0.0 0.300 360.0 360.0 148.7 360.0 -1.8 17.3 -7.1