==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 30-MAR-06 2DII . COMPND 2 MOLECULE: TFIIH BASAL TRANSCRIPTION FACTOR COMPLEX P62 . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.YONEYAMA,N.TOCHIO,S.KOSHIBA,S.WATABE,T.HARADA,T.KIGAWA, . 61 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5827.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 37 60.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 9.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 25 41.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 4.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 132 0, 0.0 2,-0.9 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0 -76.5 -9.4 9.7 19.7 2 2 A S - 0 0 117 1,-0.1 0, 0.0 2,-0.1 0, 0.0 -0.503 360.0-113.1 -67.3 103.8 -10.6 13.0 21.2 3 3 A S S S+ 0 0 129 -2,-0.9 -1,-0.1 1,-0.0 2,-0.1 -0.109 81.5 97.4 -40.4 105.1 -13.9 13.6 19.6 4 4 A G + 0 0 68 -3,-0.0 2,-0.3 0, 0.0 -2,-0.1 -0.219 38.0 156.0 162.6 101.6 -13.1 16.7 17.6 5 5 A S - 0 0 132 1,-0.1 -2,-0.0 -2,-0.1 0, 0.0 -0.888 22.0-176.8-134.7 165.1 -12.1 17.1 13.9 6 6 A S - 0 0 74 -2,-0.3 -1,-0.1 2,-0.0 0, 0.0 0.551 18.6-163.9-131.2 -32.3 -12.2 19.8 11.2 7 7 A G - 0 0 56 1,-0.1 2,-0.1 2,-0.0 3,-0.1 0.893 16.7-154.3 37.7 89.7 -10.9 18.1 8.1 8 8 A F - 0 0 153 1,-0.1 -1,-0.1 0, 0.0 -2,-0.0 -0.408 28.7 -75.4 -87.8 166.6 -10.1 21.1 5.8 9 9 A K - 0 0 203 -2,-0.1 2,-0.3 1,-0.0 -1,-0.1 -0.324 52.0-179.2 -62.0 139.9 -10.0 21.1 2.0 10 10 A R + 0 0 185 1,-0.1 -1,-0.0 -3,-0.1 0, 0.0 -0.950 22.2 169.2-148.3 123.6 -6.9 19.4 0.5 11 11 A K + 0 0 189 -2,-0.3 -1,-0.1 2,-0.0 -2,-0.0 0.829 59.7 85.6 -98.1 -44.6 -6.0 19.0 -3.1 12 12 A A S S- 0 0 72 1,-0.1 3,-0.3 2,-0.0 2,-0.1 -0.308 70.2-143.2 -61.0 139.9 -2.4 17.8 -2.8 13 13 A N >> + 0 0 107 1,-0.2 3,-1.2 2,-0.1 4,-1.1 -0.239 42.4 151.1 -99.1 43.7 -2.0 14.0 -2.3 14 14 A K H 3> + 0 0 101 1,-0.3 4,-1.6 2,-0.2 3,-0.4 0.854 68.6 63.4 -40.2 -44.5 1.0 14.4 0.1 15 15 A E H >> S+ 0 0 85 -3,-0.3 4,-2.4 1,-0.2 3,-0.6 0.922 95.8 57.1 -48.1 -52.4 -0.2 11.1 1.6 16 16 A L H <> S+ 0 0 64 -3,-1.2 4,-2.6 1,-0.3 -1,-0.2 0.897 103.2 54.4 -46.5 -47.9 0.4 9.2 -1.6 17 17 A E H 3X S+ 0 0 122 -4,-1.1 4,-2.8 -3,-0.4 -1,-0.3 0.895 113.2 43.1 -54.9 -43.0 4.0 10.4 -1.5 18 18 A E H S+ 0 0 93 0, 0.0 4,-0.8 0, 0.0 -1,-0.2 0.722 76.8 55.4 -69.7 -21.9 9.5 -4.2 0.6 28 28 A V H > S+ 0 0 114 2,-0.2 4,-0.8 1,-0.2 3,-0.3 0.876 101.6 54.8 -78.4 -40.2 8.0 -6.7 3.1 29 29 A L H >> S+ 0 0 27 1,-0.2 4,-1.7 2,-0.2 3,-0.8 0.865 98.6 64.6 -61.1 -37.0 5.0 -4.6 3.9 30 30 A F H 3X S+ 0 0 71 -4,-1.2 4,-2.1 -7,-0.3 -1,-0.2 0.914 91.7 62.8 -52.5 -47.5 4.1 -4.4 0.3 31 31 A Q H 3X S+ 0 0 103 -4,-0.8 4,-2.8 -3,-0.3 -1,-0.3 0.872 104.8 48.2 -45.9 -43.4 3.4 -8.1 0.2 32 32 A L H S+ 0 0 50 -4,-1.7 4,-2.8 1,-0.2 5,-0.5 0.828 116.2 42.4 -50.0 -34.3 -1.0 -4.7 0.8 34 34 A K H X>S+ 0 0 84 -4,-2.1 5,-1.2 3,-0.2 4,-1.1 0.980 106.9 54.6 -76.9 -64.5 -1.1 -7.0 -2.2 35 35 A D H <5S+ 0 0 109 -4,-2.8 -2,-0.2 1,-0.2 -1,-0.2 0.741 124.8 32.6 -41.8 -24.5 -2.2 -10.3 -0.6 36 36 A L H <>S+ 0 0 58 -4,-1.8 5,-2.2 -5,-0.2 6,-1.0 0.872 132.6 26.9 -98.3 -59.5 -5.1 -8.1 0.6 37 37 A V H ><5S+ 0 0 26 -4,-2.8 3,-2.5 -5,-0.3 -3,-0.2 0.957 124.3 48.7 -69.9 -52.8 -5.7 -5.5 -2.1 38 38 A V T 3<> - 0 0 82 -2,-0.3 4,-1.9 1,-0.1 3,-1.1 -0.749 29.8-120.5 -97.9 142.6 -9.6 -1.4 -0.9 44 44 A A H 3> S+ 0 0 32 -2,-0.3 4,-1.7 1,-0.3 5,-0.3 0.868 115.9 56.9 -43.9 -44.3 -6.2 0.3 -1.1 45 45 A E H 3> S+ 0 0 132 1,-0.2 4,-2.6 2,-0.2 -1,-0.3 0.894 105.2 51.1 -56.5 -42.3 -7.7 3.2 1.0 46 46 A E H <> S+ 0 0 105 -3,-1.1 4,-1.6 2,-0.2 5,-0.3 0.939 103.8 58.3 -61.4 -49.1 -8.7 0.7 3.7 47 47 A F H >X S+ 0 0 24 -4,-1.9 4,-2.4 1,-0.2 3,-0.7 0.943 116.3 32.4 -44.7 -64.9 -5.2 -0.8 3.9 48 48 A W H 3X S+ 0 0 15 -4,-1.7 4,-2.6 1,-0.2 -1,-0.2 0.891 104.3 77.5 -62.1 -40.7 -3.5 2.5 4.8 49 49 A A H 3< S+ 0 0 69 -4,-2.6 -1,-0.2 -5,-0.3 -2,-0.2 0.846 113.7 21.7 -35.1 -49.4 -6.6 3.6 6.7 50 50 A N H << S+ 0 0 97 -4,-1.6 -1,-0.2 -3,-0.7 -2,-0.2 0.852 111.4 73.5 -89.5 -41.5 -5.5 1.4 9.5 51 51 A R H < S+ 0 0 95 -4,-2.4 2,-1.5 -5,-0.3 3,-0.3 0.861 95.1 56.9 -38.7 -47.6 -1.8 1.1 8.6 52 52 A L < + 0 0 63 -4,-2.6 -1,-0.3 1,-0.2 -4,-0.0 -0.579 64.6 138.5 -90.2 74.6 -1.4 4.7 9.8 53 53 A N S S- 0 0 130 -2,-1.5 -1,-0.2 -3,-0.1 -2,-0.1 0.858 90.8 -11.9 -84.2 -39.5 -2.7 4.2 13.4 54 54 A V S S+ 0 0 121 -3,-0.3 -2,-0.1 2,-0.0 -3,-0.1 0.574 96.3 120.8-130.0 -35.8 -0.1 6.4 15.1 55 55 A N + 0 0 102 -4,-0.3 2,-0.3 1,-0.0 0, 0.0 -0.099 42.4 162.4 -39.6 107.1 2.6 7.1 12.4 56 56 A S - 0 0 106 -3,-0.0 -1,-0.0 0, 0.0 -3,-0.0 -0.933 34.3-123.1-133.9 156.8 2.5 10.9 12.3 57 57 A G - 0 0 64 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.774 26.5-115.6-103.8 146.3 4.8 13.6 11.0 58 58 A P - 0 0 132 0, 0.0 2,-0.1 0, 0.0 -1,-0.1 -0.133 32.7-105.1 -69.7 169.5 6.2 16.5 12.9 59 59 A S - 0 0 117 1,-0.1 0, 0.0 2,-0.1 0, 0.0 -0.386 12.4-137.7 -92.1 172.5 5.4 20.2 12.2 60 60 A S 0 0 138 -2,-0.1 -1,-0.1 0, 0.0 0, 0.0 0.893 360.0 360.0 -94.8 -57.9 7.6 22.9 10.6 61 61 A G 0 0 121 0, 0.0 -2,-0.1 0, 0.0 0, 0.0 0.765 360.0 360.0-103.5 360.0 7.1 26.0 12.7