==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 30-MAR-06 2DIR . COMPND 2 MOLECULE: THUMP DOMAIN-CONTAINING PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR W.DANG,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA, . 98 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6633.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 66 67.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 10 10.2 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 9.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 13.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 27 27.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 123 0, 0.0 53,-0.0 0, 0.0 57,-0.0 0.000 360.0 360.0 360.0-175.1 -6.4 -7.8 11.6 2 2 A S - 0 0 82 1,-0.1 0, 0.0 52,-0.1 0, 0.0 -0.121 360.0-125.0 -44.4 129.7 -4.6 -10.5 9.7 3 3 A S - 0 0 117 1,-0.1 -1,-0.1 2,-0.0 0, 0.0 0.880 46.1-119.1 -45.4 -45.4 -4.0 -13.5 12.0 4 4 A G + 0 0 57 1,-0.2 2,-0.3 2,-0.0 -1,-0.1 0.804 53.3 148.3 100.1 84.8 -0.3 -13.2 11.2 5 5 A S - 0 0 89 0, 0.0 -1,-0.2 0, 0.0 -2,-0.0 -0.948 39.6-124.7-152.0 126.7 1.3 -16.3 9.6 6 6 A S + 0 0 99 -2,-0.3 2,-0.2 1,-0.2 -2,-0.0 0.127 59.2 106.3 -56.9-179.8 4.2 -16.6 7.1 7 7 A G + 0 0 65 0, 0.0 2,-1.8 0, 0.0 -1,-0.2 -0.638 62.0 62.8 148.6 -86.5 3.8 -18.4 3.8 8 8 A K >> - 0 0 154 1,-0.2 3,-2.7 -2,-0.2 4,-1.9 -0.553 59.0-172.7 -77.2 84.6 3.6 -16.3 0.6 9 9 A A H 3> S+ 0 0 69 -2,-1.8 4,-2.3 1,-0.3 5,-0.4 0.886 79.6 70.7 -42.5 -49.6 7.0 -14.7 0.8 10 10 A F H 3> S+ 0 0 67 1,-0.2 4,-0.9 2,-0.2 -1,-0.3 0.810 111.6 32.1 -38.5 -37.0 6.0 -12.5 -2.2 11 11 A L H <> S+ 0 0 22 -3,-2.7 4,-2.2 2,-0.2 -2,-0.2 0.924 109.5 63.3 -87.6 -55.3 3.8 -10.8 0.3 12 12 A E H X S+ 0 0 80 -4,-1.9 4,-2.0 1,-0.2 3,-0.3 0.863 109.3 44.1 -34.7 -55.1 5.7 -11.1 3.5 13 13 A D H X S+ 0 0 97 -4,-2.3 4,-2.5 1,-0.2 -1,-0.2 0.976 107.2 56.3 -57.5 -60.2 8.5 -9.0 2.0 14 14 A M H X S+ 0 0 3 -4,-0.9 4,-2.6 -5,-0.4 -1,-0.2 0.797 109.5 52.1 -42.5 -32.4 6.2 -6.4 0.4 15 15 A K H X S+ 0 0 41 -4,-2.2 4,-2.4 -3,-0.3 5,-0.2 0.989 106.2 47.3 -70.0 -63.2 4.9 -5.9 4.0 16 16 A K H X S+ 0 0 134 -4,-2.0 4,-1.6 2,-0.2 -2,-0.2 0.821 122.5 40.9 -47.9 -33.8 8.2 -5.4 5.8 17 17 A Y H X S+ 0 0 100 -4,-2.5 4,-2.7 -5,-0.2 5,-0.4 0.976 110.7 50.0 -78.9 -69.2 9.0 -2.9 3.0 18 18 A A H X S+ 0 0 2 -4,-2.6 4,-1.6 -5,-0.2 -2,-0.2 0.763 116.5 50.7 -41.2 -28.2 5.7 -1.1 2.5 19 19 A E H X S+ 0 0 75 -4,-2.4 4,-1.8 -5,-0.2 3,-0.3 0.986 114.8 34.7 -75.4 -70.7 5.8 -0.6 6.2 20 20 A T H < S+ 0 0 87 -4,-1.6 -2,-0.2 1,-0.2 -1,-0.2 0.627 124.1 51.3 -60.5 -11.3 9.3 0.7 6.9 21 21 A F H < S+ 0 0 43 -4,-2.7 -1,-0.2 2,-0.1 -2,-0.2 0.820 116.5 34.8 -93.5 -39.1 8.8 2.5 3.6 22 22 A L H >X>S+ 0 0 4 -4,-1.6 4,-2.6 -5,-0.4 3,-1.8 0.449 90.1 101.7 -93.8 -2.7 5.4 4.1 4.3 23 23 A E H >X5S+ 0 0 55 -4,-1.8 4,-1.4 1,-0.3 3,-0.6 0.928 87.1 41.3 -44.2 -57.9 6.3 4.6 8.0 24 24 A P H 345S+ 0 0 63 0, 0.0 -1,-0.3 0, 0.0 -2,-0.1 0.553 119.7 48.2 -69.8 -7.0 7.0 8.4 7.4 25 25 A W H <45S+ 0 0 90 -3,-1.8 -2,-0.2 5,-0.1 -3,-0.1 0.594 136.7 4.7-106.2 -18.6 4.0 8.5 5.1 26 26 A F H <<5S+ 0 0 1 -4,-2.6 2,-0.3 -3,-0.6 -3,-0.2 0.574 114.0 78.0-131.6 -44.2 1.6 6.7 7.5 27 27 A K S >< - 0 0 92 1,-0.1 4,-1.0 4,-0.0 -1,-0.1 -0.310 13.3-136.2 -67.6 151.5 -4.6 -12.0 -5.8 48 48 A R H > S+ 0 0 152 2,-0.2 4,-2.7 1,-0.2 5,-0.2 0.889 102.4 56.0 -75.2 -41.3 -5.0 -8.2 -6.1 49 49 A E H > S+ 0 0 79 1,-0.2 4,-2.4 2,-0.2 5,-0.5 0.923 103.4 54.7 -56.7 -47.4 -7.4 -8.0 -3.1 50 50 A E H > S+ 0 0 77 1,-0.2 4,-1.4 2,-0.2 5,-0.3 0.884 111.4 45.7 -54.4 -41.2 -4.9 -9.7 -0.8 51 51 A V H X S+ 0 0 5 -4,-1.0 4,-2.2 3,-0.2 -2,-0.2 0.949 119.6 39.0 -68.0 -50.6 -2.3 -7.1 -1.8 52 52 A I H X S+ 0 0 30 -4,-2.7 4,-2.3 2,-0.2 5,-0.2 0.997 118.6 44.6 -62.8 -67.5 -4.6 -4.1 -1.5 53 53 A R H X S+ 0 0 162 -4,-2.4 4,-2.5 1,-0.2 3,-0.3 0.918 117.4 46.2 -41.8 -60.4 -6.5 -5.1 1.6 54 54 A E H X S+ 0 0 42 -4,-1.4 4,-1.8 -5,-0.5 3,-0.4 0.959 107.6 55.0 -48.4 -64.5 -3.4 -6.2 3.4 55 55 A L H X S+ 0 0 4 -4,-2.2 4,-1.7 -5,-0.3 3,-0.3 0.846 112.2 46.3 -37.7 -45.2 -1.4 -3.1 2.5 56 56 A A H X S+ 0 0 16 -4,-2.3 4,-1.8 -3,-0.3 -1,-0.3 0.920 105.5 58.1 -66.9 -45.2 -4.2 -1.1 4.1 57 57 A G H X S+ 0 0 41 -4,-2.5 4,-0.8 -3,-0.4 -1,-0.2 0.774 109.3 47.3 -56.5 -26.4 -4.4 -3.3 7.2 58 58 A I H X S+ 0 0 17 -4,-1.8 4,-1.3 -3,-0.3 -1,-0.2 0.870 103.1 60.5 -82.5 -40.6 -0.7 -2.5 7.8 59 59 A V H >X S+ 0 0 3 -4,-1.7 4,-1.3 -5,-0.3 3,-0.8 0.931 106.6 46.4 -51.8 -51.9 -1.1 1.3 7.3 60 60 A C H 3< S+ 0 0 56 -4,-1.8 -1,-0.2 1,-0.2 6,-0.2 0.873 102.7 65.4 -59.8 -38.5 -3.5 1.6 10.2 61 61 A T H 3< S+ 0 0 106 -4,-0.8 -1,-0.2 -5,-0.3 -2,-0.2 0.852 101.9 51.0 -52.7 -37.1 -1.3 -0.6 12.3 62 62 A L H << S+ 0 0 31 -4,-1.3 2,-0.5 -3,-0.8 -2,-0.2 0.999 127.3 8.2 -64.6 -68.6 1.3 2.2 12.2 63 63 A N >< - 0 0 27 -4,-1.3 3,-2.2 1,-0.1 -1,-0.3 -0.971 59.6-149.3-122.9 121.7 -0.8 5.2 13.2 64 64 A S T 3 S+ 0 0 111 -2,-0.5 -1,-0.1 1,-0.3 -3,-0.1 0.760 101.1 64.5 -56.2 -24.6 -4.4 4.8 14.5 65 65 A E T 3 S+ 0 0 95 -39,-0.1 -1,-0.3 -5,-0.1 2,-0.1 0.754 80.6 101.4 -70.9 -24.4 -5.0 8.2 12.9 66 66 A N < + 0 0 1 -3,-2.2 2,-0.3 -6,-0.2 -33,-0.2 -0.414 48.5 175.1 -64.9 131.7 -4.3 6.7 9.5 67 67 A K E -a 33 0A 119 -35,-2.3 -33,-0.6 -2,-0.1 2,-0.3 -0.871 27.9-133.6-145.4 107.7 -7.5 6.0 7.6 68 68 A V E -a 34 0A 63 -2,-0.3 2,-0.3 -35,-0.3 -33,-0.2 -0.424 32.7-178.2 -62.4 120.2 -7.6 4.7 4.0 69 69 A D - 0 0 62 -35,-1.8 -2,-0.0 -2,-0.3 -1,-0.0 -0.926 29.8-166.2-124.3 148.7 -10.1 6.8 2.0 70 70 A L S S+ 0 0 133 -2,-0.3 -35,-0.1 2,-0.1 -1,-0.1 0.329 89.8 47.6-111.2 3.0 -11.2 6.6 -1.6 71 71 A T S S+ 0 0 115 1,-0.0 -36,-0.1 0, 0.0 -2,-0.0 0.813 127.4 13.5-106.5 -58.4 -13.0 10.0 -1.6 72 72 A N S S+ 0 0 127 -38,-0.1 -39,-0.2 0, 0.0 2,-0.2 -0.415 82.4 170.1-119.6 55.2 -10.6 12.5 -0.1 73 73 A P - 0 0 19 0, 0.0 -39,-0.2 0, 0.0 3,-0.1 -0.448 21.3-167.9 -69.8 135.8 -7.3 10.5 -0.1 74 74 A Q S S+ 0 0 92 1,-0.3 19,-1.1 -41,-0.2 2,-0.5 0.804 77.3 35.1 -91.9 -35.9 -4.2 12.5 0.8 75 75 A Y E S-bC 34 92A 38 -42,-1.3 -40,-1.8 17,-0.2 2,-0.7 -0.977 70.8-152.1-126.4 122.3 -1.6 9.9 -0.3 76 76 A T E -bC 35 91A 22 15,-2.6 15,-2.2 -2,-0.5 2,-0.8 -0.824 9.9-168.5 -96.3 112.4 -2.1 7.5 -3.2 77 77 A V E -bC 36 90A 4 -42,-1.1 -40,-1.5 -2,-0.7 2,-0.3 -0.843 10.5-178.6-104.3 100.8 -0.3 4.2 -2.8 78 78 A V E -bC 37 89A 17 11,-2.3 11,-2.6 -2,-0.8 2,-0.6 -0.735 17.5-148.5 -99.7 147.6 -0.3 2.3 -6.1 79 79 A V E -bC 38 88A 1 -42,-2.5 -40,-2.2 -2,-0.3 2,-0.3 -0.899 15.8-171.0-119.6 102.9 1.3 -1.1 -6.6 80 80 A E E -bC 39 87A 82 7,-2.7 7,-2.7 -2,-0.6 2,-0.7 -0.680 17.8-135.3 -93.4 145.9 2.6 -1.8 -10.1 81 81 A I E + C 0 86A 6 -42,-1.0 -40,-0.5 -2,-0.3 2,-0.4 -0.877 33.3 163.9-104.9 108.9 3.8 -5.2 -11.2 82 82 A I E > - C 0 85A 49 3,-1.6 3,-0.9 -2,-0.7 -2,-0.0 -0.984 68.5 -17.9-128.2 135.0 7.1 -5.2 -13.1 83 83 A K T 3 S- 0 0 194 -2,-0.4 -1,-0.1 1,-0.3 3,-0.1 0.808 127.7 -56.0 42.0 34.7 9.5 -8.0 -13.9 84 84 A A T 3 S+ 0 0 78 1,-0.2 2,-0.3 0, 0.0 -1,-0.3 0.935 111.5 125.4 66.1 47.8 7.6 -9.9 -11.1 85 85 A V E < -C 82 0A 75 -3,-0.9 -3,-1.6 -5,-0.0 2,-0.9 -0.987 65.7-115.3-139.0 148.1 8.3 -7.2 -8.5 86 86 A C E -C 81 0A 32 -2,-0.3 2,-0.8 -5,-0.2 -5,-0.2 -0.727 30.8-168.9 -86.1 106.8 6.1 -5.1 -6.1 87 87 A C E -C 80 0A 59 -7,-2.7 -7,-2.7 -2,-0.9 2,-0.7 -0.850 2.2-164.2-101.1 107.2 6.5 -1.5 -7.1 88 88 A L E -C 79 0A 17 -2,-0.8 2,-0.5 -9,-0.2 -9,-0.2 -0.812 5.8-172.2 -94.7 117.1 5.0 0.9 -4.5 89 89 A S E -C 78 0A 53 -11,-2.6 -11,-2.3 -2,-0.7 2,-0.6 -0.937 6.7-160.1-113.8 120.1 4.5 4.4 -5.8 90 90 A V E -C 77 0A 36 -2,-0.5 2,-0.5 -13,-0.2 -13,-0.2 -0.872 8.5-172.1-102.5 118.5 3.4 7.1 -3.3 91 91 A V E -C 76 0A 70 -15,-2.2 -15,-2.6 -2,-0.6 2,-0.9 -0.938 13.6-149.6-113.9 125.6 1.8 10.2 -4.9 92 92 A K E +C 75 0A 158 -2,-0.5 2,-0.5 -17,-0.2 -17,-0.2 -0.809 24.9 170.9 -96.2 104.6 1.0 13.3 -2.8 93 93 A S + 0 0 63 -19,-1.1 -2,-0.0 -2,-0.9 3,-0.0 -0.957 9.5 170.5-118.4 128.5 -2.0 15.1 -4.2 94 94 A G + 0 0 37 -2,-0.5 -20,-0.1 4,-0.2 -2,-0.0 -0.730 11.6 175.5-140.4 89.7 -3.8 17.9 -2.4 95 95 A P > + 0 0 111 0, 0.0 3,-1.0 0, 0.0 2,-0.5 0.480 50.3 117.5 -69.8 -1.1 -6.5 19.8 -4.4 96 96 A S T 3 S- 0 0 101 1,-0.3 -2,-0.0 2,-0.2 0, 0.0 -0.573 98.8 -23.3 -73.8 120.9 -7.1 21.8 -1.2 97 97 A S T 3 0 0 139 -2,-0.5 -1,-0.3 1,-0.2 -3,-0.0 0.853 360.0 360.0 44.6 40.5 -6.4 25.5 -1.7 98 98 A G < 0 0 97 -3,-1.0 -4,-0.2 0, 0.0 -1,-0.2 -0.187 360.0 360.0 53.4 360.0 -4.1 24.4 -4.6