==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 30-MAR-06 2DIV . COMPND 2 MOLECULE: TRNA SELENOCYSTEINE ASSOCIATED PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR W.DANG,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA, . 99 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6542.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 55 55.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 19.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 10.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 16.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 133 0, 0.0 2,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 174.8 9.8 16.2 -25.8 2 2 A S - 0 0 123 1,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.313 360.0-113.9 -69.2 152.9 11.6 13.1 -27.2 3 3 A S + 0 0 125 1,-0.1 2,-0.1 -2,-0.0 -1,-0.1 0.940 54.8 167.0 -51.1 -54.4 10.4 9.6 -26.1 4 4 A G - 0 0 61 2,-0.0 2,-0.3 0, 0.0 -1,-0.1 -0.454 42.4 -41.9 74.6-144.8 13.6 8.9 -24.2 5 5 A S - 0 0 120 -2,-0.1 2,-0.3 0, 0.0 0, 0.0 -0.895 46.7-175.1-124.5 154.1 13.8 6.0 -21.8 6 6 A S + 0 0 103 -2,-0.3 -2,-0.0 1,-0.1 4,-0.0 -0.897 14.6 155.3-152.7 117.8 11.3 4.6 -19.2 7 7 A G S S+ 0 0 58 -2,-0.3 2,-0.3 4,-0.0 3,-0.3 0.786 80.8 7.5-103.8 -82.0 11.9 1.7 -16.7 8 8 A M S S+ 0 0 78 1,-0.2 83,-0.1 2,-0.1 49,-0.1 -0.329 97.6 106.5-101.1 49.7 9.8 1.8 -13.6 9 9 A A S S+ 0 0 53 -2,-0.3 -1,-0.2 1,-0.1 82,-0.2 0.885 84.4 35.1 -91.0 -49.2 7.6 4.7 -14.6 10 10 A A S S+ 0 0 20 -3,-0.3 49,-1.0 49,-0.1 2,-0.2 0.036 107.1 94.8 -94.0 25.9 4.3 2.9 -15.4 11 11 A S E -A 58 0A 4 47,-0.2 80,-0.7 49,-0.1 2,-0.3 -0.717 61.6-142.6-114.4 165.8 4.9 0.4 -12.6 12 12 A L E -AB 57 90A 2 45,-2.1 45,-2.0 -2,-0.2 2,-0.4 -0.934 17.8-115.9-129.4 152.6 3.8 0.2 -9.0 13 13 A W E -AB 56 89A 27 76,-2.9 76,-1.7 -2,-0.3 2,-0.4 -0.710 26.4-175.5 -89.8 135.1 5.4 -0.9 -5.8 14 14 A M E +AB 55 88A 2 41,-1.5 41,-2.8 -2,-0.4 74,-0.2 -0.852 15.4 157.5-134.3 98.5 4.0 -3.9 -3.9 15 15 A G + 0 0 3 72,-0.6 72,-0.3 -2,-0.4 39,-0.2 -0.134 44.8 66.8-102.5-159.9 5.5 -4.9 -0.6 16 16 A D S S+ 0 0 72 37,-0.2 2,-0.2 1,-0.2 38,-0.2 0.852 73.6 159.7 50.4 37.6 4.4 -6.8 2.5 17 17 A L - 0 0 16 36,-2.6 -1,-0.2 -3,-0.2 -2,-0.0 -0.569 41.4-107.6 -90.6 155.1 4.4 -9.9 0.3 18 18 A E > - 0 0 49 -2,-0.2 3,-1.4 -3,-0.1 35,-0.1 -0.362 27.3-111.0 -78.6 159.8 4.5 -13.5 1.6 19 19 A P T 3 S+ 0 0 85 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.432 118.4 53.7 -69.7 2.6 7.6 -15.7 1.2 20 20 A Y T 3 S+ 0 0 96 30,-0.1 2,-0.8 2,-0.1 5,-0.1 -0.078 76.0 119.9-127.6 32.1 5.6 -17.8 -1.2 21 21 A M < + 0 0 3 -3,-1.4 2,-0.2 4,-0.1 32,-0.1 -0.861 36.7 172.1-104.5 104.5 4.5 -15.0 -3.7 22 22 A D > - 0 0 81 -2,-0.8 4,-1.9 1,-0.0 3,-0.5 -0.644 55.1 -86.2-107.4 166.1 5.8 -15.7 -7.2 23 23 A E H > S+ 0 0 103 1,-0.3 4,-1.7 -2,-0.2 5,-0.1 0.782 132.4 52.8 -37.8 -32.6 5.1 -14.0 -10.5 24 24 A N H > S+ 0 0 121 2,-0.2 4,-2.3 3,-0.2 -1,-0.3 0.963 109.1 44.9 -71.0 -54.2 2.1 -16.3 -10.6 25 25 A F H > S+ 0 0 44 -3,-0.5 4,-2.2 2,-0.2 3,-0.3 0.964 115.7 46.4 -54.1 -58.9 0.7 -15.5 -7.2 26 26 A I H X S+ 0 0 0 -4,-1.9 4,-1.8 1,-0.3 5,-0.2 0.919 112.6 50.6 -50.4 -50.0 1.1 -11.7 -7.7 27 27 A S H X S+ 0 0 33 -4,-1.7 4,-2.5 -5,-0.4 -1,-0.3 0.861 108.2 54.3 -57.9 -36.9 -0.4 -11.9 -11.1 28 28 A R H X S+ 0 0 179 -4,-2.3 4,-3.0 -3,-0.3 -1,-0.2 0.921 104.2 54.3 -63.9 -45.4 -3.3 -13.9 -9.7 29 29 A A H X S+ 0 0 3 -4,-2.2 4,-1.7 2,-0.2 -2,-0.2 0.959 113.8 39.7 -53.0 -58.5 -4.1 -11.2 -7.1 30 30 A F H ><>S+ 0 0 0 -4,-1.8 5,-1.8 1,-0.2 3,-0.5 0.951 116.1 50.7 -57.4 -53.2 -4.4 -8.4 -9.7 31 31 A A H ><5S+ 0 0 62 -4,-2.5 3,-1.5 1,-0.3 -1,-0.2 0.877 107.6 55.0 -52.9 -40.9 -6.2 -10.5 -12.2 32 32 A T H 3<5S+ 0 0 95 -4,-3.0 -1,-0.3 1,-0.3 -2,-0.2 0.870 105.5 51.5 -61.8 -37.9 -8.6 -11.6 -9.5 33 33 A M T <<5S- 0 0 51 -4,-1.7 -1,-0.3 -3,-0.5 -2,-0.2 0.387 129.7 -98.9 -80.3 4.6 -9.4 -7.9 -8.7 34 34 A G T < 5S+ 0 0 63 -3,-1.5 2,-0.4 -4,-0.2 -3,-0.2 0.877 81.0 134.4 80.4 39.8 -10.1 -7.5 -12.5 35 35 A E < - 0 0 6 -5,-1.8 2,-1.2 -8,-0.1 -1,-0.2 -0.981 51.2-141.3-127.4 123.8 -6.7 -6.0 -13.3 36 36 A T - 0 0 118 -2,-0.4 2,-0.2 -6,-0.1 -9,-0.0 -0.683 23.6-155.5 -85.0 95.8 -4.6 -7.0 -16.3 37 37 A V - 0 0 30 -2,-1.2 22,-0.2 -10,-0.3 3,-0.1 -0.467 9.7-157.9 -72.7 140.1 -1.0 -7.0 -15.1 38 38 A M - 0 0 105 20,-2.3 2,-0.3 1,-0.3 21,-0.2 0.937 67.3 -20.8 -82.0 -53.3 1.7 -6.5 -17.6 39 39 A S E -C 58 0A 63 19,-0.7 19,-2.0 2,-0.0 2,-0.3 -0.967 53.1-151.4-153.2 165.5 4.7 -8.0 -15.8 40 40 A V E -C 57 0A 9 -2,-0.3 2,-0.5 17,-0.2 17,-0.2 -0.978 3.4-166.3-148.0 131.1 5.9 -8.8 -12.2 41 41 A K E -C 56 0A 127 15,-2.2 15,-1.9 -2,-0.3 2,-0.7 -0.964 10.4-152.6-122.5 118.5 9.4 -9.0 -10.7 42 42 A I E -C 55 0A 17 -2,-0.5 2,-1.0 13,-0.2 13,-0.2 -0.794 15.0-137.9 -92.7 116.0 10.0 -10.7 -7.4 43 43 A I E + 0 0 45 11,-1.5 9,-2.7 -2,-0.7 10,-0.5 -0.608 38.6 162.9 -75.6 103.7 13.0 -9.3 -5.5 44 44 A R E -C 51 0A 144 -2,-1.0 6,-0.1 7,-0.3 5,-0.0 -0.813 36.7-104.3-121.1 162.0 14.8 -12.3 -4.1 45 45 A N - 0 0 95 5,-1.5 -1,-0.1 -2,-0.3 0, 0.0 -0.222 16.9-134.0 -77.6 171.6 18.2 -13.0 -2.7 46 46 A R S S+ 0 0 212 2,-0.1 -1,-0.1 3,-0.1 -2,-0.0 0.768 103.3 28.9 -96.0 -33.2 21.0 -14.8 -4.5 47 47 A L S S+ 0 0 153 3,-0.1 -2,-0.0 1,-0.0 0, 0.0 0.879 135.1 29.1 -92.7 -49.1 22.1 -17.0 -1.6 48 48 A T S S- 0 0 89 2,-0.1 -2,-0.1 1,-0.0 -1,-0.0 0.704 86.6-151.9 -84.2 -21.9 18.9 -17.4 0.4 49 49 A G + 0 0 39 1,-0.2 -3,-0.1 -5,-0.0 -1,-0.0 0.657 46.0 144.2 58.5 13.7 16.7 -17.0 -2.7 50 50 A I - 0 0 99 -6,-0.1 -5,-1.5 1,-0.1 2,-0.5 -0.669 58.1-110.2 -88.6 138.6 14.1 -15.5 -0.4 51 51 A P E - C 0 44A 21 0, 0.0 -7,-0.3 0, 0.0 4,-0.1 -0.528 18.7-134.2 -69.8 116.3 11.9 -12.7 -1.6 52 52 A A E - 0 0 71 -9,-2.7 -8,-0.1 -2,-0.5 3,-0.1 0.766 56.8 -95.4 -39.4 -29.4 12.8 -9.5 0.2 53 53 A G E S+ 0 0 15 -10,-0.5 -36,-2.6 1,-0.4 2,-0.3 0.571 95.9 74.6 118.5 18.8 9.0 -9.2 0.6 54 54 A Y E - 0 0 70 -11,-0.4 -11,-1.5 -39,-0.2 -1,-0.4 -0.991 51.0-166.8-156.8 154.6 8.1 -6.9 -2.3 55 55 A C E -AC 14 42A 0 -41,-2.8 -41,-1.5 -2,-0.3 2,-0.4 -0.980 20.9-120.9-144.7 155.0 7.7 -7.0 -6.1 56 56 A F E -AC 13 41A 45 -15,-1.9 -15,-2.2 -2,-0.3 2,-0.4 -0.789 21.8-159.0-100.3 140.1 7.3 -4.6 -9.0 57 57 A V E -AC 12 40A 0 -45,-2.0 -45,-2.1 -2,-0.4 2,-0.3 -0.966 4.4-150.0-121.9 133.2 4.3 -4.6 -11.3 58 58 A E E -AC 11 39A 91 -19,-2.0 -20,-2.3 -2,-0.4 -19,-0.7 -0.681 16.5-179.7 -99.7 153.9 4.2 -3.1 -14.8 59 59 A F - 0 0 10 -49,-1.0 -49,-0.1 -2,-0.3 -22,-0.1 -0.893 45.8 -88.3-143.7 172.3 1.2 -1.6 -16.6 60 60 A A S S- 0 0 69 -2,-0.3 2,-0.3 1,-0.1 -50,-0.1 0.920 99.7 -34.6 -48.1 -52.1 0.1 -0.0 -19.8 61 61 A D > - 0 0 73 -51,-0.1 4,-2.3 1,-0.1 -1,-0.1 -0.948 64.2 -87.7-161.2 177.2 1.0 3.4 -18.5 62 62 A L H > S+ 0 0 90 -2,-0.3 4,-2.6 2,-0.2 5,-0.1 0.935 120.0 58.1 -61.3 -48.3 1.1 5.7 -15.5 63 63 A A H > S+ 0 0 49 1,-0.2 4,-1.7 2,-0.2 5,-0.2 0.927 111.8 40.4 -46.8 -55.1 -2.4 6.9 -16.0 64 64 A T H > S+ 0 0 56 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.906 111.1 57.8 -62.7 -43.2 -3.8 3.4 -15.8 65 65 A A H X S+ 0 0 0 -4,-2.3 4,-0.9 2,-0.2 -1,-0.2 0.867 106.6 51.1 -55.4 -38.5 -1.4 2.4 -13.0 66 66 A E H >X S+ 0 0 60 -4,-2.6 4,-2.3 2,-0.2 3,-1.8 0.997 113.1 39.8 -62.9 -67.5 -2.9 5.3 -10.9 67 67 A K H 3X S+ 0 0 146 -4,-1.7 4,-0.6 1,-0.3 -1,-0.2 0.783 120.4 49.4 -53.6 -27.3 -6.6 4.5 -11.2 68 68 A C H 3< S+ 0 0 24 -4,-2.2 -1,-0.3 -5,-0.2 -2,-0.2 0.634 111.4 48.7 -86.5 -16.3 -5.5 0.8 -10.9 69 69 A L H 4 S+ 0 0 0 -4,-0.2 2,-2.1 2,-0.1 3,-1.1 0.422 89.1 115.5-121.2 -6.9 -6.8 -1.6 -4.7 73 73 A N T 3< S+ 0 0 85 -4,-0.6 14,-0.1 1,-0.3 -4,-0.1 -0.449 99.4 2.8 -68.6 83.0 -4.8 0.8 -2.5 74 74 A G T 3 S+ 0 0 47 -2,-2.1 -1,-0.3 12,-0.9 13,-0.1 0.194 103.5 121.4 124.3 -14.4 -6.3 -0.3 0.8 75 75 A K S < S- 0 0 109 -3,-1.1 11,-3.3 11,-0.1 -1,-0.4 -0.408 72.9 -90.1 -79.7 157.0 -8.6 -3.1 -0.4 76 76 A P E -D 85 0B 73 0, 0.0 9,-0.3 0, 0.0 -1,-0.1 -0.483 38.9-128.4 -69.8 129.3 -8.2 -6.7 0.9 77 77 A L E -D 84 0B 13 7,-2.2 7,-0.8 -2,-0.2 -47,-0.1 -0.670 22.9-129.7 -83.3 125.8 -5.8 -8.9 -1.2 78 78 A P S S+ 0 0 35 0, 0.0 2,-2.2 0, 0.0 3,-0.1 -0.241 84.6 19.9 -69.8 159.9 -7.3 -12.2 -2.4 79 79 A G S S+ 0 0 59 1,-0.2 -2,-0.0 3,-0.1 -54,-0.0 -0.233 84.6 133.8 77.2 -51.8 -5.6 -15.5 -1.8 80 80 A A - 0 0 5 -2,-2.2 -1,-0.2 1,-0.1 4,-0.1 0.018 62.0-106.6 -33.8 124.4 -3.4 -14.1 0.9 81 81 A T S S- 0 0 96 2,-0.2 2,-0.2 -3,-0.1 -1,-0.1 -0.939 96.6 -6.8-115.4 127.0 -3.5 -16.6 3.8 82 82 A P S S- 0 0 124 0, 0.0 2,-0.3 0, 0.0 -3,-0.1 -0.778 130.0 -67.0 -69.8 -43.3 -4.9 -16.0 6.1 83 83 A A - 0 0 76 -2,-0.2 2,-0.3 -5,-0.1 -2,-0.2 -0.894 48.8-179.5-170.9 138.8 -5.6 -12.6 4.7 84 84 A K E -D 77 0B 52 -7,-0.8 -7,-2.2 -2,-0.3 2,-0.4 -0.821 28.2-106.0-135.5 174.5 -3.7 -9.4 3.9 85 85 A R E -D 76 0B 158 -9,-0.3 2,-0.8 -2,-0.3 -10,-0.1 -0.862 40.6 -99.9-108.7 140.4 -4.2 -5.9 2.6 86 86 A F - 0 0 5 -11,-3.3 2,-1.0 -2,-0.4 -12,-0.9 -0.385 39.8-161.5 -58.8 101.0 -3.3 -4.7 -0.9 87 87 A K + 0 0 86 -2,-0.8 -72,-0.6 -72,-0.3 2,-0.3 -0.759 24.5 156.6 -92.0 99.2 -0.0 -2.9 -0.2 88 88 A L E +B 14 0A 1 -2,-1.0 2,-0.3 -74,-0.2 -74,-0.2 -0.939 9.9 165.4-125.4 147.2 0.7 -0.6 -3.1 89 89 A N E -B 13 0A 67 -76,-1.7 -76,-2.9 -2,-0.3 4,-0.1 -0.987 45.0 -75.3-155.4 158.6 2.7 2.6 -3.5 90 90 A Y E > -B 12 0A 103 -2,-0.3 3,-1.2 -78,-0.2 -78,-0.1 -0.298 39.2-125.7 -58.1 134.8 4.3 4.9 -6.1 91 91 A A T 3 S+ 0 0 34 -80,-0.7 -1,-0.2 1,-0.3 -79,-0.1 0.689 111.4 61.5 -55.2 -17.2 7.4 3.4 -7.7 92 92 A T T 3 + 0 0 100 1,-0.1 2,-0.8 -83,-0.1 -1,-0.3 -0.225 61.8 133.9-104.5 42.1 9.0 6.7 -6.6 93 93 A Y < + 0 0 126 -3,-1.2 2,-1.1 -4,-0.1 -1,-0.1 -0.160 24.9 144.8 -84.2 42.2 8.4 6.2 -2.9 94 94 A S - 0 0 81 -2,-0.8 4,-0.3 2,-0.0 -2,-0.0 -0.704 61.5 -0.2 -86.4 97.9 12.0 7.2 -2.2 95 95 A G S S- 0 0 43 -2,-1.1 -3,-0.0 2,-0.1 0, 0.0 0.100 75.0-104.5 101.7 144.7 11.9 9.1 1.1 96 96 A P S S+ 0 0 143 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.854 114.5 57.7 -69.8 -36.5 9.1 10.0 3.6 97 97 A S S S+ 0 0 116 2,-0.1 -2,-0.1 -3,-0.0 -3,-0.0 0.989 86.5 82.0 -57.8 -66.3 9.0 13.7 2.5 98 98 A S 0 0 75 -4,-0.3 -3,-0.0 1,-0.1 0, 0.0 -0.124 360.0 360.0 -44.2 127.7 8.3 13.1 -1.2 99 99 A G 0 0 126 -6,-0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.802 360.0 360.0 173.8 360.0 4.6 12.5 -1.7