==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION 31-MAR-06 2DJB . COMPND 2 MOLECULE: POLYCOMB GROUP RING FINGER PROTEIN 6; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.MIYAMOTO,T.KIGAWA,M.SATO,S.KOSHIBA,M.INOUE,S.YOKOYAMA, . 72 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6289.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 25 34.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 4.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 4.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 9.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 4.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 130 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 143.1 -29.1 8.1 11.8 2 2 A S + 0 0 116 2,-0.1 3,-0.1 1,-0.0 0, 0.0 0.913 360.0 166.1 -92.2 -61.7 -28.3 4.4 11.0 3 3 A S + 0 0 123 1,-0.2 2,-0.5 0, 0.0 -1,-0.0 0.861 30.4 149.6 44.3 42.1 -26.4 4.6 7.7 4 4 A G + 0 0 60 2,-0.0 2,-0.3 0, 0.0 -1,-0.2 -0.924 13.1 155.6-112.1 123.4 -25.5 0.9 8.3 5 5 A S + 0 0 124 -2,-0.5 2,-0.3 -3,-0.1 0, 0.0 -0.973 10.9 125.7-148.5 129.7 -24.8 -1.5 5.5 6 6 A S + 0 0 132 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.978 3.2 138.8-171.1 166.2 -22.8 -4.7 5.3 7 7 A G + 0 0 57 -2,-0.3 2,-0.4 1,-0.1 -1,-0.1 0.373 27.4 136.9 144.7 68.8 -22.9 -8.4 4.4 8 8 A N + 0 0 145 2,-0.0 2,-0.4 0, 0.0 -1,-0.1 -0.971 16.7 170.4-140.0 122.2 -20.0 -9.9 2.5 9 9 A L + 0 0 161 -2,-0.4 2,-0.3 2,-0.0 0, 0.0 -0.995 9.5 151.8-135.1 131.1 -18.3 -13.2 3.2 10 10 A S - 0 0 113 -2,-0.4 2,-0.5 2,-0.1 -2,-0.0 -0.904 40.1-117.0-147.2 173.5 -15.7 -15.1 1.1 11 11 A E + 0 0 178 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.895 56.2 118.7-123.4 101.7 -12.8 -17.5 1.3 12 12 A L - 0 0 127 -2,-0.5 -2,-0.1 1,-0.0 0, 0.0 -0.934 70.0 -44.9-151.5 172.4 -9.4 -16.2 0.3 13 13 A T > - 0 0 91 -2,-0.3 3,-1.5 1,-0.2 4,-0.2 -0.156 45.2-143.3 -45.7 121.3 -5.9 -15.5 1.6 14 14 A P G > S+ 0 0 98 0, 0.0 3,-0.7 0, 0.0 -1,-0.2 0.424 89.8 84.3 -69.8 3.4 -6.3 -13.9 5.0 15 15 A Y G 3 + 0 0 197 1,-0.2 22,-0.1 4,-0.0 4,-0.1 0.793 61.8 86.8 -76.1 -29.3 -3.2 -11.8 4.1 16 16 A I G < S+ 0 0 77 -3,-1.5 -1,-0.2 2,-0.1 7,-0.1 0.804 71.9 97.4 -38.9 -35.9 -5.4 -9.3 2.2 17 17 A L S < S- 0 0 94 -3,-0.7 2,-0.5 -4,-0.2 7,-0.2 -0.053 81.8-115.1 -53.6 159.3 -5.8 -7.6 5.6 18 18 A C > - 0 0 2 5,-0.6 4,-1.8 1,-0.1 20,-0.1 -0.870 3.8-144.0-105.5 132.6 -3.5 -4.6 6.4 19 19 A S T 4 S+ 0 0 58 18,-0.5 -1,-0.1 -2,-0.5 19,-0.1 0.717 104.8 32.3 -63.5 -20.0 -1.0 -4.8 9.2 20 20 A I T 4 S+ 0 0 74 3,-0.0 -1,-0.1 -3,-0.0 18,-0.0 0.865 127.2 33.7 -99.4 -65.8 -1.8 -1.1 9.8 21 21 A C T 4 S- 0 0 68 1,-0.1 -2,-0.2 2,-0.1 3,-0.2 0.787 89.3-149.2 -62.8 -27.4 -5.5 -0.6 9.0 22 22 A K S < S+ 0 0 162 -4,-1.8 -3,-0.1 1,-0.2 2,-0.1 0.764 72.6 56.2 62.2 25.1 -6.1 -4.1 10.2 23 23 A G S S- 0 0 24 1,-0.3 -5,-0.6 -7,-0.1 -1,-0.2 -0.271 99.8 -14.9-145.7-126.9 -9.0 -4.3 7.7 24 24 A Y - 0 0 179 -7,-0.2 -1,-0.3 -3,-0.2 2,-0.2 -0.476 58.6-124.7 -90.9 163.7 -9.5 -3.8 4.0 25 25 A L - 0 0 42 -2,-0.1 -1,-0.1 1,-0.1 -8,-0.0 -0.607 16.9-171.9-104.6 166.9 -7.1 -2.2 1.5 26 26 A I S S+ 0 0 144 -2,-0.2 -1,-0.1 3,-0.0 13,-0.0 0.679 85.2 14.7-120.3 -62.0 -7.6 0.6 -1.0 27 27 A D S S- 0 0 86 2,-0.1 12,-0.1 0, 0.0 -2,-0.1 0.869 83.3-146.0 -85.7 -42.1 -4.6 1.0 -3.3 28 28 A A - 0 0 52 1,-0.2 2,-0.7 -12,-0.0 11,-0.2 0.928 21.8-173.8 74.7 47.6 -3.0 -2.3 -2.5 29 29 A T E -A 38 0A 43 9,-1.0 9,-2.0 8,-0.0 2,-0.4 -0.660 7.0-157.1 -79.8 114.3 0.7 -1.2 -2.9 30 30 A T E -A 37 0A 70 -2,-0.7 7,-0.2 7,-0.2 2,-0.2 -0.755 15.2-121.5 -95.2 137.4 3.0 -4.2 -2.6 31 31 A I - 0 0 12 5,-2.3 4,-0.2 -2,-0.4 -1,-0.0 -0.472 4.9-145.9 -76.3 145.7 6.6 -3.7 -1.6 32 32 A T S S+ 0 0 106 -2,-0.2 -1,-0.1 3,-0.1 -2,-0.0 0.260 94.2 50.1 -93.3 11.1 9.4 -4.9 -4.0 33 33 A E S S+ 0 0 73 3,-0.1 -1,-0.1 25,-0.1 -3,-0.0 0.775 128.7 8.4-109.3 -69.0 11.6 -5.9 -1.0 34 34 A C S S- 0 0 32 24,-0.1 -2,-0.1 2,-0.1 -4,-0.0 0.440 95.7-124.9 -95.2 -2.5 9.7 -8.1 1.5 35 35 A L + 0 0 117 -4,-0.2 2,-0.3 1,-0.2 -3,-0.1 0.953 54.6 157.0 57.3 53.8 6.7 -8.4 -0.9 36 36 A H - 0 0 50 -7,-0.0 -5,-2.3 2,-0.0 2,-0.5 -0.844 42.8-120.5-112.2 148.4 4.2 -7.1 1.7 37 37 A T E +A 30 0A 48 -2,-0.3 -18,-0.5 -7,-0.2 2,-0.3 -0.744 40.7 158.4 -90.2 128.5 0.8 -5.5 1.1 38 38 A F E -A 29 0A 0 -9,-2.0 -9,-1.0 -2,-0.5 -20,-0.1 -0.971 43.9-104.8-152.6 133.4 0.3 -2.0 2.4 39 39 A C >> - 0 0 5 -2,-0.3 4,-2.7 -11,-0.2 5,-0.6 -0.277 34.1-118.6 -57.2 136.4 -2.1 0.8 1.6 40 40 A K H >5S+ 0 0 112 1,-0.3 4,-2.7 2,-0.2 5,-0.3 0.899 118.1 42.6 -40.5 -55.5 -0.5 3.6 -0.4 41 41 A S H >5S+ 0 0 98 3,-0.2 4,-2.7 2,-0.2 -1,-0.3 0.877 116.2 51.0 -61.7 -38.7 -1.3 6.1 2.4 42 42 A C H >5S+ 0 0 17 2,-0.2 4,-3.0 3,-0.2 5,-0.3 0.994 117.2 34.9 -62.4 -65.6 -0.2 3.5 5.0 43 43 A I H X5S+ 0 0 9 -4,-2.7 4,-1.4 1,-0.2 -2,-0.2 0.878 121.8 49.9 -57.5 -39.7 3.2 2.6 3.5 44 44 A V H <X S+ 0 0 149 -4,-2.7 4,-1.0 -5,-0.3 3,-1.0 0.901 111.7 50.8 -69.0 -42.2 2.8 7.5 5.8 46 46 A H H 3X S+ 0 0 37 -4,-3.0 4,-2.7 1,-0.3 6,-0.4 0.798 106.0 56.9 -65.6 -28.9 5.0 5.1 7.6 47 47 A F H 3< S+ 0 0 30 -4,-1.4 -1,-0.3 -5,-0.3 -2,-0.2 0.650 98.7 62.5 -76.4 -15.5 7.9 6.0 5.3 48 48 A Y H <4 S+ 0 0 180 -3,-1.0 -1,-0.2 -4,-0.5 -2,-0.2 0.862 119.5 21.9 -76.9 -37.9 7.4 9.6 6.4 49 49 A Y H < S+ 0 0 171 -4,-1.0 2,-0.4 1,-0.3 -2,-0.2 0.836 136.3 26.5 -95.9 -43.6 8.3 8.9 10.0 50 50 A S < - 0 0 47 -4,-2.7 -1,-0.3 -5,-0.2 2,-0.3 -0.985 61.3-150.1-128.0 126.5 10.2 5.7 9.6 51 51 A N S S+ 0 0 84 -2,-0.4 2,-0.2 -3,-0.1 9,-0.2 -0.034 75.9 85.4 -81.8 33.8 12.2 4.6 6.5 52 52 A R S S- 0 0 122 -6,-0.4 7,-0.3 -2,-0.3 -2,-0.2 -0.747 87.3 -91.5-127.4 175.1 11.4 1.0 7.5 53 53 A C > - 0 0 2 5,-0.7 4,-1.6 -2,-0.2 -2,-0.1 -0.788 19.9-145.2 -94.7 126.6 8.7 -1.6 7.0 54 54 A P T 4 S+ 0 0 43 0, 0.0 -1,-0.1 0, 0.0 -11,-0.0 0.336 98.7 47.4 -69.8 10.0 6.0 -1.8 9.7 55 55 A K T 4 S+ 0 0 94 3,-0.1 -3,-0.0 -19,-0.0 -2,-0.0 0.743 131.2 7.5-112.9 -67.1 5.9 -5.5 9.0 56 56 A C T 4 S- 0 0 47 2,-0.1 0, 0.0 -20,-0.0 0, 0.0 0.614 95.9-122.9 -93.8 -16.4 9.4 -7.0 8.9 57 57 A N < + 0 0 99 -4,-1.6 2,-0.4 1,-0.2 -5,-0.0 0.925 54.8 155.9 74.0 46.8 11.0 -3.8 10.0 58 58 A I - 0 0 41 -5,-0.0 2,-1.7 2,-0.0 -5,-0.7 -0.898 50.5-119.9-110.3 134.7 13.4 -3.4 7.0 59 59 A V - 0 0 81 -2,-0.4 2,-0.8 -7,-0.3 -7,-0.3 -0.519 30.5-154.9 -72.5 87.8 14.8 -0.1 5.9 60 60 A V - 0 0 7 -2,-1.7 2,-0.8 -9,-0.2 4,-0.3 -0.529 11.9-173.0 -69.1 105.3 13.4 -0.0 2.4 61 61 A H + 0 0 134 -2,-0.8 -1,-0.1 1,-0.2 -2,-0.1 -0.414 55.5 97.2 -97.4 56.8 15.8 2.2 0.4 62 62 A Q S S+ 0 0 103 -2,-0.8 -1,-0.2 2,-0.2 -2,-0.0 0.820 74.5 49.1-105.4 -61.3 13.7 2.3 -2.8 63 63 A T S S- 0 0 82 -3,-0.3 -2,-0.1 1,-0.2 -3,-0.0 0.936 131.0 -31.6 -44.7 -62.1 11.6 5.6 -2.7 64 64 A Q - 0 0 102 -4,-0.3 -1,-0.2 1,-0.0 -2,-0.2 -0.894 40.6-138.0-167.0 133.2 14.7 7.7 -1.9 65 65 A P S S+ 0 0 130 0, 0.0 2,-0.4 0, 0.0 -2,-0.1 0.515 89.4 79.2 -69.8 -3.8 17.9 7.3 0.1 66 66 A L - 0 0 132 1,-0.1 -2,-0.0 -3,-0.0 0, 0.0 -0.878 69.4-150.5-110.6 140.0 17.3 10.8 1.5 67 67 A S - 0 0 99 -2,-0.4 -1,-0.1 1,-0.0 -3,-0.0 0.939 37.5-152.4 -70.8 -48.8 14.9 11.6 4.3 68 68 A G - 0 0 37 2,-0.1 -4,-0.0 0, 0.0 -1,-0.0 0.160 16.3 -77.9 88.6 151.6 14.2 15.2 3.1 69 69 A P - 0 0 122 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.137 55.0 -84.6 -69.8-169.2 13.1 18.3 5.0 70 70 A S S S+ 0 0 128 2,-0.1 2,-0.7 0, 0.0 -2,-0.1 -0.187 75.0 143.5 -94.7 40.9 9.6 19.2 6.3 71 71 A S 0 0 105 -2,-0.2 0, 0.0 1,-0.0 0, 0.0 -0.734 360.0 360.0 -86.6 113.1 8.5 20.5 3.0 72 72 A G 0 0 124 -2,-0.7 -2,-0.1 0, 0.0 -1,-0.0 -0.443 360.0 360.0 -64.6 360.0 4.9 19.7 2.3