==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 05-APR-06 2DJV . COMPND 2 MOLECULE: METHIONYL-TRNA SYNTHETASE; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.SATO,A.SASAGAWA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA, . 79 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6686.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 53 67.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 7.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 41 51.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 132 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-178.1 -19.0 0.0 -22.0 2 2 A S + 0 0 127 2,-0.0 2,-0.3 4,-0.0 4,-0.0 -0.736 360.0 178.3 -89.8 129.2 -17.5 3.4 -21.2 3 3 A S + 0 0 115 -2,-0.5 2,-0.5 2,-0.0 0, 0.0 -0.967 46.5 37.0-131.8 146.9 -15.2 5.0 -23.8 4 4 A G S S- 0 0 86 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.768 107.6 -4.0 122.9 -87.6 -13.4 8.3 -24.0 5 5 A S - 0 0 105 -2,-0.5 3,-0.1 3,-0.0 -2,-0.0 -0.986 42.7-147.9-144.6 152.6 -12.0 9.4 -20.6 6 6 A S - 0 0 129 1,-0.5 2,-0.1 -2,-0.3 -2,-0.0 -0.260 66.2 -79.1-113.9 43.9 -12.1 8.1 -17.0 7 7 A G - 0 0 59 2,-0.0 -1,-0.5 0, 0.0 2,-0.3 -0.355 63.4 -58.5 91.6-174.7 -11.9 11.5 -15.3 8 8 A T - 0 0 133 -3,-0.1 2,-0.4 -2,-0.1 -3,-0.0 -0.752 41.9-131.6-109.1 156.6 -9.0 13.8 -14.6 9 9 A T + 0 0 131 -2,-0.3 2,-0.3 4,-0.1 -2,-0.0 -0.847 29.3 164.0-109.3 144.0 -5.7 13.2 -12.7 10 10 A A > - 0 0 33 -2,-0.4 4,-2.2 1,-0.2 5,-0.2 -0.984 42.2-123.1-153.2 159.7 -4.2 15.4 -10.1 11 11 A K H > S+ 0 0 115 -2,-0.3 4,-1.4 2,-0.2 -1,-0.2 0.983 115.1 35.6 -67.9 -60.1 -1.6 15.4 -7.3 12 12 A P H > S+ 0 0 98 0, 0.0 4,-0.7 0, 0.0 -1,-0.2 0.617 120.7 54.3 -69.7 -12.3 -3.9 16.4 -4.4 13 13 A Q H >> S+ 0 0 120 2,-0.2 4,-1.1 3,-0.1 3,-0.9 0.947 102.5 49.2 -85.4 -61.3 -6.7 14.4 -6.0 14 14 A Q H >X S+ 0 0 79 -4,-2.2 4,-2.4 1,-0.3 3,-0.6 0.858 104.0 65.4 -46.4 -40.7 -5.1 11.0 -6.4 15 15 A I H 3X S+ 0 0 23 -4,-1.4 4,-2.4 1,-0.3 -1,-0.3 0.928 96.9 52.8 -48.6 -53.8 -4.1 11.2 -2.8 16 16 A Q H X S+ 0 0 19 -4,-2.4 4,-2.2 1,-0.2 3,-1.3 0.970 100.8 60.9 -59.2 -57.3 -5.1 6.3 -2.3 19 19 A M H 3X S+ 0 0 70 -4,-2.4 4,-1.6 1,-0.3 -1,-0.2 0.861 104.7 50.6 -36.1 -51.8 -6.0 6.9 1.4 20 20 A D H 3X S+ 0 0 104 -4,-1.1 4,-2.7 1,-0.2 -1,-0.3 0.885 108.9 52.2 -57.2 -40.6 -9.2 4.9 0.8 21 21 A E H S+ 0 0 21 -4,-1.8 5,-3.2 -5,-0.3 3,-0.5 0.928 110.9 37.8 -54.5 -49.0 -7.7 -13.2 3.8 33 33 A K H ><5S+ 0 0 124 -4,-1.6 3,-1.2 1,-0.2 -1,-0.2 0.797 111.5 60.5 -73.4 -29.2 -5.8 -14.7 6.7 34 34 A A H 3<5S+ 0 0 77 -4,-1.7 -1,-0.2 1,-0.3 -2,-0.2 0.704 109.8 42.8 -70.7 -19.6 -8.9 -15.0 8.8 35 35 A Q T 3<5S- 0 0 116 -4,-1.4 -1,-0.3 -3,-0.5 -2,-0.2 0.136 116.8-112.0-111.0 16.9 -10.3 -17.3 6.1 36 36 A K T < 5 - 0 0 181 -3,-1.2 -3,-0.2 1,-0.1 3,-0.1 0.905 48.5-166.5 53.0 45.7 -7.1 -19.3 5.6 37 37 A A < - 0 0 23 -5,-3.2 -1,-0.1 -6,-0.2 5,-0.1 -0.218 33.3 -79.4 -61.6 152.5 -6.7 -17.8 2.1 38 38 A D > - 0 0 96 1,-0.1 4,-2.8 4,-0.1 5,-0.3 -0.277 37.0-124.3 -55.5 132.2 -4.1 -19.4 -0.2 39 39 A K H > S+ 0 0 181 1,-0.3 4,-2.4 2,-0.2 -1,-0.1 0.842 114.6 49.8 -46.0 -38.0 -0.6 -18.2 0.6 40 40 A N H > S+ 0 0 127 2,-0.2 4,-1.9 1,-0.2 -1,-0.3 0.928 109.1 49.5 -68.8 -46.5 -0.4 -17.1 -3.0 41 41 A E H > S+ 0 0 131 1,-0.2 4,-1.1 2,-0.2 -2,-0.2 0.895 114.5 46.1 -59.6 -41.8 -3.7 -15.2 -2.9 42 42 A V H X S+ 0 0 11 -4,-2.8 4,-2.7 1,-0.2 3,-0.5 0.963 106.6 56.4 -66.1 -54.0 -2.6 -13.4 0.2 43 43 A A H X S+ 0 0 53 -4,-2.4 4,-2.3 -5,-0.3 5,-0.3 0.889 99.4 63.0 -44.2 -48.7 0.9 -12.5 -0.9 44 44 A A H X S+ 0 0 60 -4,-1.9 4,-1.5 1,-0.2 -1,-0.2 0.921 111.6 34.8 -42.7 -60.1 -0.7 -10.8 -3.9 45 45 A E H X S+ 0 0 56 -4,-1.1 4,-2.9 -3,-0.5 -1,-0.2 0.927 111.3 64.7 -63.3 -46.5 -2.5 -8.2 -1.8 46 46 A V H X S+ 0 0 50 -4,-2.7 4,-2.0 1,-0.2 3,-0.3 0.920 104.7 43.3 -40.2 -66.5 0.3 -8.1 0.8 47 47 A A H X S+ 0 0 52 -4,-2.3 4,-1.4 1,-0.2 -1,-0.2 0.920 111.9 54.7 -47.5 -52.5 2.9 -6.7 -1.6 48 48 A K H >X S+ 0 0 70 -4,-1.5 4,-2.4 -5,-0.3 3,-0.6 0.903 106.2 53.0 -49.4 -46.9 0.3 -4.2 -3.0 49 49 A L H 3X S+ 0 0 34 -4,-2.9 4,-2.1 -3,-0.3 5,-0.3 0.957 103.2 54.7 -54.6 -56.2 -0.4 -3.0 0.6 50 50 A L H 3X S+ 0 0 74 -4,-2.0 4,-0.7 1,-0.3 -1,-0.3 0.798 112.0 47.7 -48.9 -30.1 3.3 -2.3 1.2 51 51 A D H S+ 0 0 54 -4,-0.7 4,-2.6 -3,-0.4 5,-0.7 0.981 110.1 53.3 -72.5 -60.3 4.2 4.6 0.2 55 55 A Q H <5S+ 0 0 107 -4,-2.9 4,-0.4 1,-0.2 -2,-0.2 0.728 118.5 42.8 -48.0 -21.7 2.1 5.9 -2.7 56 56 A L H X5S+ 0 0 21 -4,-2.0 4,-1.9 -5,-0.3 -2,-0.2 0.917 119.0 37.7 -90.1 -57.3 0.1 7.5 0.1 57 57 A A H X>S+ 0 0 10 -4,-2.7 4,-2.7 -5,-0.3 5,-0.7 0.960 118.9 48.8 -59.6 -54.7 2.8 8.9 2.4 58 58 A V H <5S+ 0 0 74 -4,-2.6 -1,-0.2 1,-0.2 -3,-0.2 0.933 107.8 55.1 -51.1 -52.8 5.2 9.9 -0.4 59 59 A A H 4 - 0 0 70 0, 0.0 3,-0.7 0, 0.0 2,-0.6 -0.341 38.9 -96.2 -69.8 148.6 9.0 9.5 3.4 64 64 A P T 3 S- 0 0 27 0, 0.0 -10,-0.1 0, 0.0 -11,-0.0 -0.536 89.4 -41.5 -69.8 110.3 8.1 5.8 2.7 65 65 A E T 3 S+ 0 0 53 -2,-0.6 7,-0.1 -12,-0.1 -11,-0.0 0.828 88.4 160.5 34.5 44.9 8.7 3.9 5.9 66 66 A A S < S+ 0 0 27 -3,-0.7 8,-0.2 1,-0.2 -1,-0.1 0.982 74.7 25.9 -55.4 -64.1 11.9 5.9 6.3 67 67 A P S S+ 0 0 120 0, 0.0 2,-0.3 0, 0.0 -1,-0.2 0.858 112.3 80.2 -69.7 -37.0 12.3 5.3 10.0 68 68 A K S S+ 0 0 147 2,-0.0 4,-0.1 5,-0.0 0, 0.0 -0.573 96.0 7.5 -76.2 130.5 10.4 2.0 10.0 69 69 A G - 0 0 52 -2,-0.3 0, 0.0 2,-0.1 0, 0.0 0.415 67.1-125.5 75.9 143.0 12.5 -0.9 8.8 70 70 A K S S+ 0 0 190 1,-0.1 -1,-0.1 3,-0.1 -2,-0.0 0.902 104.8 54.6 -87.0 -49.2 16.2 -0.9 8.0 71 71 A K S S+ 0 0 179 1,-0.1 2,-1.0 2,-0.1 -2,-0.1 0.925 94.0 76.7 -50.0 -51.3 16.2 -2.2 4.4 72 72 A K S S- 0 0 102 -4,-0.1 2,-0.3 -7,-0.1 -1,-0.1 -0.502 72.6-175.5 -67.5 99.8 13.8 0.5 3.4 73 73 A K - 0 0 162 -2,-1.0 -7,-0.1 1,-0.1 -3,-0.1 -0.706 38.9-110.6 -99.8 151.4 16.1 3.5 3.2 74 74 A S - 0 0 81 -2,-0.3 -1,-0.1 -8,-0.2 -8,-0.1 0.893 45.4-179.7 -42.0 -51.7 15.0 7.1 2.4 75 75 A G - 0 0 60 1,-0.1 -1,-0.0 -9,-0.1 -2,-0.0 0.942 17.7-149.9 42.7 74.9 16.7 6.9 -1.0 76 76 A P - 0 0 115 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 -0.219 17.9 -96.7 -69.7 161.9 15.9 10.4 -2.2 77 77 A S + 0 0 127 1,-0.1 -2,-0.0 2,-0.0 0, 0.0 -0.509 36.5 174.9 -81.5 149.1 15.5 11.3 -5.9 78 78 A S 0 0 127 -2,-0.2 -1,-0.1 0, 0.0 0, 0.0 0.717 360.0 360.0-117.2 -56.2 18.3 12.7 -8.0 79 79 A G 0 0 123 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 0.503 360.0 360.0 98.5 360.0 17.2 13.0 -11.6