==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-DEC-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOME 06-DEC-99 1DK1 . COMPND 2 MOLECULE: RRNA FRAGMENT; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; . AUTHOR A.NIKULIN,A.SERGANOV,E.ENNIFAR,S.TISCHENKO,N.NEVSKAYA . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6441.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 72 83.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 5.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 16 18.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 49 57.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 101 A P 0 0 151 0, 0.0 2,-2.1 0, 0.0 36,-0.0 0.000 360.0 360.0 360.0 -50.5 17.0 58.4 19.2 2 102 A I - 0 0 27 4,-0.1 3,-0.0 3,-0.1 32,-0.0 -0.465 360.0-161.2 76.5 -71.8 17.0 56.3 16.0 3 103 A T >> - 0 0 84 -2,-2.1 4,-3.3 1,-0.1 3,-0.9 0.123 38.4 -70.9 76.5 166.5 15.6 59.1 13.7 4 104 A K H 3>>S+ 0 0 149 1,-0.3 4,-1.7 2,-0.2 5,-1.3 0.877 126.8 70.2 -59.4 -41.2 14.0 58.7 10.3 5 105 A E H 345S+ 0 0 144 3,-0.2 -1,-0.3 1,-0.2 -2,-0.1 0.223 121.4 20.0 -65.3 22.8 17.3 57.8 8.6 6 106 A E H <>5S+ 0 0 65 -3,-0.9 4,-2.7 -2,-0.2 -2,-0.2 0.216 126.2 45.9-149.7 -68.7 16.7 54.6 10.7 7 107 A K H X5S+ 0 0 100 -4,-3.3 4,-1.6 1,-0.2 -3,-0.2 0.860 121.0 41.9 -57.4 -37.2 13.1 54.2 11.7 8 108 A Q H X5S+ 0 0 99 -4,-1.7 4,-3.2 -5,-0.3 -1,-0.2 0.886 110.5 58.9 -76.9 -35.9 11.9 55.0 8.2 9 109 A K H 4X S+ 0 0 20 -4,-2.7 4,-2.3 2,-0.2 3,-2.0 0.973 113.7 48.7 -67.0 -50.6 13.5 49.8 8.5 11 111 A X H 3X S+ 0 0 36 -4,-1.6 4,-2.8 1,-0.3 -2,-0.2 0.920 106.9 55.6 -53.0 -48.8 9.9 50.4 7.6 12 112 A Q H 3< S+ 0 0 142 -4,-3.2 -1,-0.3 1,-0.2 -2,-0.2 0.635 113.2 45.6 -61.9 -8.9 10.8 50.9 4.0 13 113 A E H <4 S+ 0 0 108 -3,-2.0 -2,-0.2 -4,-0.3 -1,-0.2 0.821 120.3 32.9-100.6 -41.5 12.5 47.5 4.2 14 114 A F H < S+ 0 0 20 -4,-2.3 12,-0.3 -5,-0.1 -2,-0.2 0.588 87.8 122.4 -92.8 -10.6 9.9 45.4 5.9 15 115 A A < - 0 0 30 -4,-2.8 6,-0.1 -5,-0.3 -3,-0.0 -0.172 57.6-145.9 -52.9 141.4 6.8 47.2 4.5 16 116 A R S S- 0 0 134 1,-0.3 -1,-0.2 0, 0.0 -4,-0.0 0.517 82.7 -0.5 -85.9 -7.0 4.4 44.9 2.6 17 117 A F S > S- 0 0 115 3,-0.0 3,-3.2 0, 0.0 2,-2.4 -0.885 99.5 -67.4-177.2 151.3 3.7 47.8 0.2 18 118 A P T 3 S+ 0 0 143 0, 0.0 -6,-0.1 0, 0.0 3,-0.1 -0.144 126.3 24.6 -46.3 60.2 4.6 51.5 -0.4 19 119 A G T 3 S+ 0 0 56 -2,-2.4 2,-0.2 1,-0.2 -7,-0.1 0.212 82.1 139.6 160.6 -5.0 3.0 53.1 2.6 20 120 A D < + 0 0 14 -3,-3.2 -1,-0.2 1,-0.2 -5,-0.1 -0.443 7.5 149.4 -64.1 128.8 3.0 50.2 5.0 21 121 A T + 0 0 95 -2,-0.2 -1,-0.2 -7,-0.1 -10,-0.1 0.327 69.9 35.0-141.1 -2.1 3.9 51.5 8.5 22 122 A G + 0 0 44 1,-0.1 2,-0.5 -11,-0.0 -2,-0.1 0.221 68.9 129.2-147.1 28.5 2.0 49.2 10.8 23 123 A S S S- 0 0 8 1,-0.1 2,-2.8 4,-0.0 -1,-0.1 -0.077 74.6-108.0 -79.4 30.0 1.8 45.7 9.4 24 124 A T S > S+ 0 0 21 -2,-0.5 4,-2.6 1,-0.2 5,-0.2 -0.276 120.2 59.4 75.7 -60.2 2.9 43.4 12.2 25 125 A E H >> S+ 0 0 14 -2,-2.8 4,-3.3 2,-0.2 3,-0.6 0.999 110.8 39.0 -62.5 -62.8 6.1 42.7 10.3 26 126 A V H 3> S+ 0 0 0 -12,-0.3 4,-1.8 1,-0.3 5,-0.4 0.917 116.6 54.1 -49.5 -44.6 7.0 46.4 10.4 27 127 A Q H 34 S+ 0 0 79 1,-0.2 -1,-0.3 2,-0.2 -2,-0.2 0.883 113.7 40.4 -58.1 -41.0 5.7 46.5 13.9 28 128 A V H X S+ 0 0 5 -4,-3.3 4,-1.5 1,-0.3 3,-1.1 0.970 112.9 39.2 -49.7 -71.6 11.0 44.8 13.0 30 130 A L H 3X S+ 0 0 44 -4,-1.8 4,-1.1 1,-0.3 -1,-0.3 0.694 113.4 60.4 -58.7 -10.2 11.3 48.3 14.4 31 131 A L H 3> S+ 0 0 19 -5,-0.4 4,-0.8 -3,-0.3 -1,-0.3 0.889 106.5 44.3 -80.4 -37.1 10.3 46.6 17.7 32 132 A T H X S+ 0 0 81 -4,-1.1 4,-2.9 2,-0.2 3,-1.5 0.963 110.2 63.0 -73.9 -57.2 18.8 46.1 20.6 37 137 A R H 3< S+ 0 0 104 -4,-1.8 4,-0.3 1,-0.3 -1,-0.2 0.642 116.5 33.9 -41.9 -17.1 19.3 49.9 20.6 38 138 A L H 3> S+ 0 0 29 -4,-0.3 4,-2.4 -3,-0.2 -1,-0.3 0.542 106.5 64.7-117.0 -19.0 18.6 49.6 24.4 39 139 A S H X S+ 0 0 130 -4,-2.9 4,-1.1 1,-0.2 3,-0.7 0.902 109.6 53.6 -56.6 -45.1 23.3 48.0 24.1 41 141 A H H >> S+ 0 0 58 -5,-0.4 4,-1.7 -4,-0.3 3,-0.5 0.979 100.8 57.6 -52.2 -66.4 22.4 50.9 26.4 42 142 A L H 3< S+ 0 0 27 -4,-2.4 -1,-0.2 1,-0.2 6,-0.2 0.723 100.8 61.8 -37.0 -32.7 21.8 48.8 29.5 43 143 A K H X< S+ 0 0 134 -4,-1.1 3,-0.6 -3,-0.7 -1,-0.2 0.992 104.8 42.1 -61.1 -64.3 25.4 47.6 29.1 44 144 A V H << S+ 0 0 118 -4,-1.1 2,-0.5 -3,-0.5 -1,-0.2 0.808 125.0 41.2 -51.8 -33.5 27.2 51.0 29.5 45 145 A H T >< + 0 0 83 -4,-1.7 3,-1.4 1,-0.1 4,-0.3 -0.698 64.3 163.1-119.7 77.6 24.7 51.7 32.3 46 146 A K T < S+ 0 0 159 -3,-0.6 -1,-0.1 -2,-0.5 -2,-0.1 0.572 75.3 61.6 -71.6 -7.5 24.4 48.5 34.4 47 147 A K T 3 S+ 0 0 191 1,-0.1 3,-0.3 -3,-0.1 -1,-0.3 0.533 78.2 89.7 -95.0 -6.1 22.9 50.5 37.2 48 148 A D < + 0 0 54 -3,-1.4 2,-3.3 -6,-0.2 -2,-0.1 0.942 42.6 152.9 -54.8 -57.3 19.9 51.8 35.2 49 149 A H >> + 0 0 115 -4,-0.3 3,-3.0 1,-0.3 4,-0.9 -0.289 61.6 72.2 60.4 -71.3 17.5 48.9 36.1 50 150 A H H >> S+ 0 0 119 -2,-3.3 3,-1.2 1,-0.3 4,-0.5 0.851 96.1 51.7 -40.1 -47.1 14.4 51.1 35.6 51 151 A S H 3> S+ 0 0 43 1,-0.3 4,-1.2 2,-0.2 3,-0.4 0.730 96.8 68.3 -65.4 -21.7 15.0 51.1 31.9 52 152 A H H <> S+ 0 0 86 -3,-3.0 4,-2.2 1,-0.2 -1,-0.3 0.828 84.4 72.8 -65.8 -29.3 15.2 47.3 32.0 53 153 A R H X S+ 0 0 109 -4,-1.7 4,-1.9 1,-0.2 3,-1.1 0.966 111.4 45.6 -61.7 -53.0 -0.2 36.1 16.4 69 169 A L H 3X S+ 0 0 1 -4,-2.8 4,-0.8 1,-0.2 8,-0.3 0.547 105.9 63.4 -67.5 -8.2 1.4 36.1 12.9 70 170 A Q H 3< S+ 0 0 85 -4,-0.8 -1,-0.2 -3,-0.5 -2,-0.2 0.746 108.1 39.9 -87.3 -26.0 2.4 32.5 13.4 71 171 A R H << S+ 0 0 133 -3,-1.1 -2,-0.2 -4,-1.0 -3,-0.1 0.918 122.3 38.3 -85.4 -53.7 -1.2 31.3 13.6 72 172 A E H < S+ 0 0 119 -4,-1.9 -3,-0.2 1,-0.2 -2,-0.1 0.784 134.6 13.7 -71.8 -29.2 -2.7 33.5 10.9 73 173 A D X + 0 0 31 -4,-0.8 4,-1.4 -5,-0.3 -1,-0.2 -0.369 58.9 172.4-151.9 71.9 0.2 33.4 8.4 74 174 A P H >> S+ 0 0 63 0, 0.0 4,-1.7 0, 0.0 3,-1.0 0.876 81.7 57.8 -42.7 -55.5 2.9 30.8 8.9 75 175 A E H >> S+ 0 0 123 1,-0.3 4,-1.9 2,-0.2 3,-0.8 0.936 109.3 44.6 -42.0 -62.6 4.6 31.5 5.6 76 176 A R H 3> S+ 0 0 58 1,-0.2 4,-2.8 -3,-0.2 -1,-0.3 0.735 106.4 64.1 -56.5 -25.0 5.2 35.1 6.6 77 177 A Y H < S+ 0 0 130 -4,-1.9 3,-1.7 -5,-0.3 -2,-0.2 0.969 114.1 39.5 -49.0 -63.9 10.1 35.1 6.5 80 180 A L H 3< S+ 0 0 9 -4,-2.8 5,-0.3 1,-0.3 -1,-0.2 0.889 104.4 64.9 -55.4 -47.6 9.9 37.7 9.2 81 181 A I T 3X>S+ 0 0 34 -4,-2.8 5,-0.7 -5,-0.2 4,-0.5 0.503 101.4 67.1 -58.6 0.3 11.8 35.6 11.9 82 182 A E T <45S+ 0 0 123 -3,-1.7 -3,-0.0 -4,-0.3 0, 0.0 -0.483 82.9 48.7-106.7-178.7 14.7 35.9 9.4 83 183 A K T 45S+ 0 0 111 1,-0.2 -1,-0.2 -2,-0.2 -2,-0.1 0.611 133.9 29.3 60.4 4.5 16.5 39.2 8.6 84 184 A L T 45S- 0 0 75 -3,-0.2 -1,-0.2 2,-0.0 -2,-0.2 0.268 103.7-138.8-155.4 -47.8 16.5 39.3 12.4 85 185 A G T <5 0 0 52 -4,-0.5 -3,-0.2 -5,-0.3 -4,-0.1 0.699 360.0 360.0 78.2 121.0 16.5 35.7 13.7 86 186 A I < 0 0 127 -5,-0.7 -2,-0.0 0, 0.0 -5,-0.0 -0.612 360.0 360.0 -97.0 360.0 14.5 34.4 16.6