==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSFERASE 06-DEC-99 1DK2 . COMPND 2 MOLECULE: DNA POLYMERASE BETA; . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; . AUTHOR M.W.MACIEJEWSKI,R.PRASAD,D-J.LIU,S.H.WILSON,G.P.MULLEN . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7374.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 54.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 37 43.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A S 0 0 128 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 36.6 -13.5 -21.3 0.7 2 3 A K + 0 0 191 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.971 360.0 163.4 60.0 85.1 -10.7 -21.5 -2.0 3 4 A R + 0 0 185 2,-0.0 0, 0.0 0, 0.0 0, 0.0 0.870 8.1 174.9 -97.1 -70.9 -11.3 -18.4 -4.2 4 5 A K - 0 0 192 2,-0.0 0, 0.0 0, 0.0 0, 0.0 0.976 25.4-145.1 60.3 83.6 -8.2 -17.7 -6.3 5 6 A A - 0 0 83 1,-0.1 2,-0.1 42,-0.0 3,-0.0 -0.132 23.0 -90.3 -70.8 176.1 -9.3 -14.8 -8.5 6 7 A P - 0 0 100 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.475 47.0 -91.2 -86.3 157.7 -8.0 -14.4 -12.1 7 8 A Q + 0 0 197 -2,-0.1 2,-0.3 2,-0.0 0, 0.0 -0.530 62.3 151.4 -71.3 127.9 -4.9 -12.4 -13.1 8 9 A E - 0 0 122 -2,-0.3 2,-1.0 -3,-0.0 3,-0.2 -0.981 50.9-114.0-152.4 162.1 -5.7 -8.8 -13.8 9 10 A T + 0 0 148 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.700 68.5 117.2-102.7 83.8 -4.1 -5.3 -13.7 10 11 A L S S- 0 0 69 -2,-1.0 -1,-0.1 36,-0.1 3,-0.1 0.761 93.0 -16.8-110.1 -69.7 -6.1 -3.5 -11.0 11 12 A N S > S+ 0 0 24 -3,-0.2 4,-1.1 37,-0.1 -2,-0.1 -0.112 94.9 115.2-131.9 37.2 -3.9 -2.5 -8.0 12 13 A G T 4 S+ 0 0 48 1,-0.2 4,-0.4 2,-0.2 -1,-0.1 0.468 70.9 63.5 -86.6 0.5 -0.9 -4.8 -8.5 13 14 A G T > S+ 0 0 51 2,-0.1 4,-0.8 -3,-0.1 -1,-0.2 0.841 101.1 48.2 -90.8 -37.2 1.4 -1.7 -9.1 14 15 A I H >> S+ 0 0 13 1,-0.2 3,-2.1 2,-0.2 4,-1.5 0.979 108.7 52.1 -66.0 -55.5 1.0 -0.2 -5.6 15 16 A T H 3X S+ 0 0 19 -4,-1.1 4,-3.1 1,-0.3 5,-0.4 0.838 102.3 62.8 -51.5 -31.5 1.7 -3.5 -3.8 16 17 A D H 3> S+ 0 0 113 -4,-0.4 4,-1.0 1,-0.2 -1,-0.3 0.838 107.2 42.8 -64.9 -29.4 4.9 -3.8 -5.9 17 18 A M H X S+ 0 0 127 -4,-1.0 4,-1.2 -5,-0.4 3,-0.8 0.991 117.4 37.3 -69.0 -59.4 9.7 -3.8 -2.3 21 22 A L H 3X S+ 0 0 48 -4,-1.2 4,-1.3 1,-0.2 -1,-0.2 0.861 108.6 68.2 -61.6 -30.7 10.2 -1.1 0.4 22 23 A A H >X S+ 0 0 4 -4,-1.4 4,-1.7 1,-0.3 3,-0.7 0.915 97.8 51.1 -55.4 -40.2 8.7 -3.7 2.9 23 24 A N H S+ 0 0 87 2,-0.2 4,-1.4 -3,-0.1 5,-0.2 0.758 76.7 56.4 -92.4 -26.8 10.1 -3.7 12.1 33 34 A H H > S+ 0 0 120 1,-0.2 4,-1.0 2,-0.2 3,-0.1 0.968 113.1 39.6 -69.5 -49.7 7.3 -1.2 13.0 34 35 A K H > S+ 0 0 90 1,-0.2 4,-1.5 2,-0.2 5,-0.3 0.758 105.8 72.5 -70.5 -19.9 7.1 0.2 9.5 35 36 A Y H > S+ 0 0 71 -4,-0.3 4,-2.2 1,-0.2 3,-0.4 0.988 99.5 41.6 -57.7 -60.1 7.7 -3.4 8.2 36 37 A N H X S+ 0 0 80 -4,-1.4 4,-2.5 1,-0.2 5,-0.5 0.826 104.6 73.7 -58.0 -28.0 4.1 -4.5 9.1 37 38 A A H X S+ 0 0 15 -4,-1.0 4,-1.6 1,-0.2 -1,-0.2 0.968 112.1 21.5 -49.8 -63.1 3.0 -1.1 7.8 38 39 A Y H X S+ 0 0 33 -4,-1.5 4,-2.3 -3,-0.4 5,-0.2 0.752 116.9 69.2 -80.4 -23.2 3.5 -2.1 4.1 39 40 A R H X S+ 0 0 138 -4,-2.2 4,-0.9 -5,-0.3 -2,-0.2 0.942 111.2 31.4 -61.3 -45.4 3.3 -5.8 4.8 40 41 A K H X S+ 0 0 113 -4,-2.5 4,-2.7 23,-0.2 5,-0.3 0.931 121.1 49.5 -78.9 -46.7 -0.4 -5.6 5.6 41 42 A A H X S+ 0 0 0 -4,-1.6 4,-1.7 -5,-0.5 5,-0.2 0.839 111.9 51.3 -62.2 -29.7 -1.3 -2.8 3.2 42 43 A A H X S+ 0 0 5 -4,-2.3 4,-0.9 2,-0.2 -1,-0.2 0.825 112.2 45.9 -77.1 -30.0 0.6 -4.6 0.4 43 44 A S H X S+ 0 0 62 -4,-0.9 4,-1.2 -5,-0.2 -2,-0.2 0.908 116.1 43.6 -79.0 -42.8 -1.4 -7.9 1.1 44 45 A V H < S+ 0 0 21 -4,-2.7 -2,-0.2 2,-0.2 -3,-0.2 0.933 119.5 42.2 -69.2 -44.4 -4.8 -6.2 1.4 45 46 A I H < S+ 0 0 5 -4,-1.7 3,-0.5 -5,-0.3 -1,-0.2 0.804 115.5 51.2 -73.2 -26.5 -4.3 -4.0 -1.7 46 47 A A H < S+ 0 0 56 -4,-0.9 -1,-0.2 -5,-0.2 -2,-0.2 0.724 121.5 32.3 -82.4 -20.2 -2.7 -6.9 -3.6 47 48 A K S < S+ 0 0 174 -4,-1.2 -1,-0.2 -3,-0.1 -2,-0.2 0.038 87.4 132.3-122.7 26.5 -5.6 -9.2 -2.8 48 49 A Y - 0 0 60 -3,-0.5 -37,-0.1 1,-0.1 -3,-0.1 -0.603 52.6-144.6 -80.8 141.0 -8.4 -6.7 -2.8 49 50 A P S S+ 0 0 92 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.306 81.8 36.6 -85.3 7.3 -11.6 -7.6 -4.8 50 51 A H S S- 0 0 116 -5,-0.0 2,-0.2 -39,-0.0 -2,-0.1 -0.875 82.5-107.0-147.0 179.6 -12.1 -3.9 -5.8 51 52 A K - 0 0 130 -2,-0.3 2,-0.3 -41,-0.0 -40,-0.1 -0.657 23.8-143.6-109.7 169.0 -10.2 -0.7 -6.8 52 53 A I - 0 0 8 -2,-0.2 3,-0.1 -7,-0.1 6,-0.0 -0.932 16.9-176.4-131.3 156.0 -9.6 2.5 -4.8 53 54 A K + 0 0 146 -2,-0.3 2,-0.3 1,-0.2 3,-0.1 0.024 69.4 40.1-140.1 28.8 -9.4 6.2 -5.8 54 55 A S S > S- 0 0 52 1,-0.1 4,-0.7 0, 0.0 3,-0.4 -0.966 80.6-110.3-170.2 155.3 -8.5 7.9 -2.5 55 56 A G H >> S+ 0 0 8 -2,-0.3 4,-1.4 1,-0.2 3,-0.8 0.844 116.9 61.4 -63.2 -30.3 -6.3 7.5 0.6 56 57 A A H 3> S+ 0 0 67 1,-0.2 4,-2.1 2,-0.2 3,-0.3 0.908 95.5 59.5 -63.8 -39.3 -9.5 6.9 2.6 57 58 A E H 34 S+ 0 0 61 -3,-0.4 4,-0.3 1,-0.2 -1,-0.2 0.771 108.0 47.2 -61.4 -22.0 -10.3 3.8 0.5 58 59 A A H << S+ 0 0 0 -3,-0.8 -1,-0.2 -4,-0.7 -2,-0.2 0.760 108.0 54.2 -90.2 -26.6 -7.0 2.4 1.7 59 60 A K H < S+ 0 0 119 -4,-1.4 4,-0.2 -3,-0.3 -2,-0.2 0.888 99.6 60.5 -74.6 -37.9 -7.5 3.2 5.4 60 61 A K S < S+ 0 0 124 -4,-2.1 -1,-0.2 2,-0.1 -2,-0.1 0.812 85.7 100.0 -59.7 -26.8 -10.9 1.4 5.6 61 62 A L S > S- 0 0 5 -4,-0.3 3,-0.7 -5,-0.2 2,-0.7 -0.302 88.4-107.8 -60.4 146.1 -9.0 -1.8 4.6 62 63 A P T 3 S+ 0 0 114 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 -0.660 105.5 24.8 -79.5 109.8 -8.2 -4.1 7.6 63 64 A G T 3 S+ 0 0 32 -2,-0.7 2,-0.4 1,-0.4 -22,-0.3 -0.006 97.2 101.4 125.7 -28.5 -4.5 -3.8 8.3 64 65 A V < - 0 0 13 -3,-0.7 -1,-0.4 -6,-0.2 -26,-0.1 -0.703 48.6-176.0 -89.8 138.3 -3.8 -0.4 6.9 65 66 A G - 0 0 38 -2,-0.4 4,-0.4 -28,-0.1 -4,-0.1 0.044 46.2 -77.6-107.3-141.7 -3.5 2.5 9.3 66 67 A T S > S+ 0 0 99 3,-0.2 4,-1.7 2,-0.1 5,-0.1 0.767 122.6 56.1 -96.1 -30.6 -3.0 6.3 8.7 67 68 A K H > S+ 0 0 157 2,-0.2 4,-1.3 1,-0.1 3,-0.1 0.996 116.9 32.5 -65.4 -62.1 0.7 6.2 7.9 68 69 A I H > S+ 0 0 4 1,-0.2 4,-1.5 2,-0.2 3,-0.5 0.937 118.6 55.0 -61.6 -44.9 0.5 3.6 5.0 69 70 A A H > S+ 0 0 5 -4,-0.4 4,-1.7 1,-0.2 -1,-0.2 0.875 102.1 59.2 -57.4 -34.5 -2.9 4.9 4.0 70 71 A E H X S+ 0 0 124 -4,-1.7 4,-1.4 1,-0.2 -1,-0.2 0.919 102.8 51.3 -61.9 -41.0 -1.4 8.4 3.7 71 72 A K H X S+ 0 0 110 -4,-1.3 4,-1.0 -3,-0.5 -1,-0.2 0.854 104.1 59.3 -65.5 -31.3 1.1 7.1 1.1 72 73 A I H >X S+ 0 0 2 -4,-1.5 4,-2.1 1,-0.2 3,-0.9 0.942 100.5 54.5 -63.5 -44.5 -1.8 5.7 -0.9 73 74 A D H 3X S+ 0 0 65 -4,-1.7 4,-3.0 1,-0.3 -1,-0.2 0.911 103.8 55.5 -56.6 -40.3 -3.4 9.1 -1.2 74 75 A E H 3X S+ 0 0 91 -4,-1.4 4,-1.0 1,-0.2 5,-0.3 0.822 107.0 52.6 -63.1 -27.0 -0.1 10.4 -2.7 75 76 A F H << S+ 0 0 93 -4,-1.0 -2,-0.2 -3,-0.9 -1,-0.2 0.955 116.3 35.4 -73.2 -51.4 -0.5 7.6 -5.3 76 77 A L H < S+ 0 0 65 -4,-2.1 -2,-0.2 1,-0.1 -3,-0.2 0.816 116.3 59.2 -73.4 -29.2 -4.1 8.5 -6.4 77 78 A A H < S- 0 0 57 -4,-3.0 -3,-0.2 -5,-0.3 -2,-0.2 0.985 133.0 -48.3 -63.1 -80.1 -3.4 12.2 -6.0 78 79 A T < - 0 0 109 -4,-1.0 -3,-0.1 -5,-0.2 -4,-0.1 0.623 60.9-125.7-123.2 -68.7 -0.5 12.8 -8.4 79 80 A G S S+ 0 0 49 -5,-0.3 2,-0.3 0, 0.0 -3,-0.1 -0.175 76.9 12.1 145.0 -46.1 2.4 10.3 -8.1 80 81 A K + 0 0 190 -5,-0.1 2,-0.3 -6,-0.0 -5,-0.0 -0.994 56.4 176.4-156.5 153.9 5.6 12.3 -7.5 81 82 A L - 0 0 94 -2,-0.3 3,-0.1 1,-0.1 -3,-0.0 -0.978 18.1-165.0-160.3 146.1 6.6 15.9 -6.7 82 83 A R S S+ 0 0 217 -2,-0.3 2,-0.2 1,-0.2 -1,-0.1 0.858 78.6 14.6-100.1 -54.8 9.8 17.9 -6.0 83 84 A K S S- 0 0 148 1,-0.1 -1,-0.2 0, 0.0 2,-0.2 -0.650 80.1-109.6-114.9 174.5 8.6 21.2 -4.5 84 85 A L - 0 0 157 -2,-0.2 2,-0.3 -3,-0.1 -1,-0.1 -0.503 26.2-131.4 -98.7 171.9 5.3 22.3 -3.1 85 86 A E 0 0 188 -2,-0.2 -1,-0.0 1,-0.1 0, 0.0 -0.819 360.0 360.0-121.2 162.9 2.8 24.8 -4.6 86 87 A K 0 0 254 -2,-0.3 -1,-0.1 0, 0.0 -2,-0.0 0.142 360.0 360.0-148.1 360.0 1.0 27.9 -3.1