==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSFERASE 06-DEC-99 1DK3 . COMPND 2 MOLECULE: DNA POLYMERASE BETA; . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; . AUTHOR M.W.MACIEJEWSKI,R.PRASAD,D.-J.LIU,S.H.WILSON,G.P.MULLEN . 87 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7323.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 64.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 9.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 37 42.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 186 0, 0.0 3,-0.3 0, 0.0 4,-0.1 0.000 360.0 360.0 360.0 31.0 13.8 6.6 -22.2 2 2 A S + 0 0 111 1,-0.2 2,-0.7 2,-0.1 3,-0.0 0.900 360.0 0.3 60.1 99.5 11.0 4.1 -22.3 3 3 A K S S+ 0 0 167 1,-0.1 2,-1.1 0, 0.0 -1,-0.2 -0.148 122.1 78.8 84.8 -40.8 8.0 5.5 -20.3 4 4 A R + 0 0 154 -2,-0.7 2,-0.2 -3,-0.3 -1,-0.1 -0.687 64.1 166.8-100.9 84.0 9.9 8.7 -19.5 5 5 A K - 0 0 162 -2,-1.1 3,-0.1 1,-0.1 0, 0.0 -0.593 41.0 -94.1 -94.2 158.9 9.6 10.8 -22.7 6 6 A A - 0 0 76 -2,-0.2 2,-0.5 1,-0.1 -1,-0.1 -0.104 49.9 -88.9 -62.9 170.9 10.5 14.5 -23.0 7 7 A P - 0 0 87 0, 0.0 3,-0.3 0, 0.0 -1,-0.1 -0.720 28.4-155.7 -86.6 124.1 7.7 17.1 -22.6 8 8 A Q S S+ 0 0 152 -2,-0.5 2,-1.1 1,-0.3 -2,-0.0 0.991 90.0 36.0 -63.5 -59.7 5.9 18.1 -25.8 9 9 A E S S- 0 0 160 1,-0.0 2,-0.9 0, 0.0 -1,-0.3 -0.743 84.1-150.3 -97.5 92.7 4.8 21.6 -24.7 10 10 A T + 0 0 102 -2,-1.1 4,-0.1 -3,-0.3 -2,-0.0 -0.441 31.8 159.2 -63.4 101.4 7.6 22.9 -22.5 11 11 A L S S+ 0 0 79 -2,-0.9 3,-0.4 38,-0.1 -1,-0.2 0.918 76.0 6.6 -89.6 -72.8 5.7 25.1 -20.1 12 12 A N S > S+ 0 0 12 37,-0.2 4,-1.1 34,-0.2 5,-0.1 -0.225 95.8 112.6-104.7 44.3 7.8 25.7 -17.0 13 13 A G T 4 S+ 0 0 37 2,-0.1 4,-0.4 1,-0.1 -1,-0.2 0.622 75.4 51.5 -90.0 -12.7 10.9 23.9 -18.4 14 14 A G T > S+ 0 0 51 -3,-0.4 4,-0.8 2,-0.1 -1,-0.1 0.831 111.1 46.0 -90.9 -35.8 13.0 27.1 -18.6 15 15 A I H >> S+ 0 0 21 2,-0.2 4,-1.8 1,-0.2 3,-1.8 0.985 112.1 48.1 -69.3 -58.8 12.4 28.2 -15.0 16 16 A T H 3X S+ 0 0 22 -4,-1.1 4,-3.1 1,-0.3 5,-0.4 0.832 105.2 62.6 -52.8 -30.7 13.0 24.8 -13.3 17 17 A D H 3> S+ 0 0 105 -4,-0.4 4,-0.8 1,-0.2 -1,-0.3 0.841 109.1 40.1 -66.0 -29.9 16.2 24.6 -15.4 18 18 A M H X S+ 0 0 132 -4,-0.8 4,-1.2 -5,-0.4 3,-0.6 0.993 117.4 35.2 -69.3 -61.1 20.8 24.1 -11.8 22 22 A L H 3X S+ 0 0 46 -4,-1.2 4,-1.2 1,-0.2 -1,-0.2 0.870 109.2 69.2 -61.9 -32.2 21.7 26.7 -9.1 23 23 A A H >X S+ 0 0 4 -4,-1.2 4,-1.8 1,-0.3 3,-0.9 0.924 98.0 49.8 -52.5 -43.7 19.9 24.4 -6.6 24 24 A N H S+ 0 0 96 2,-0.1 4,-1.4 3,-0.1 5,-0.2 0.736 74.1 59.4-103.0 -30.4 21.5 24.5 2.5 34 34 A H H > S+ 0 0 134 1,-0.2 4,-0.9 2,-0.2 -2,-0.1 0.963 111.5 41.3 -63.6 -47.8 18.9 27.2 3.3 35 35 A K H > S+ 0 0 71 2,-0.2 4,-1.6 1,-0.2 5,-0.4 0.779 105.2 72.0 -70.5 -23.0 18.9 28.3 -0.4 36 36 A Y H >> S+ 0 0 53 1,-0.2 4,-2.9 2,-0.2 3,-0.5 0.990 101.1 38.8 -55.5 -68.2 19.0 24.6 -1.4 37 37 A N H 3X>S+ 0 0 85 -4,-1.4 4,-2.4 1,-0.2 5,-0.6 0.790 106.7 73.8 -54.8 -23.6 15.4 23.8 -0.5 38 38 A A H 3X5S+ 0 0 24 -4,-0.9 4,-1.5 -5,-0.2 -1,-0.2 0.981 115.4 16.0 -54.7 -60.7 14.5 27.3 -1.8 39 39 A Y H < S+ 0 0 2 -4,-2.3 3,-2.0 -5,-0.3 -34,-0.2 0.966 114.0 49.5 -67.4 -51.0 7.0 24.2 -10.9 47 47 A A H 3< S+ 0 0 57 -4,-2.7 -1,-0.2 -5,-0.3 -2,-0.2 0.767 122.1 37.2 -60.3 -21.5 8.8 21.4 -12.8 48 48 A K T 3< S+ 0 0 182 -4,-1.4 -1,-0.3 -5,-0.2 -2,-0.2 0.019 90.6 123.3-118.1 27.6 5.9 19.2 -11.9 49 49 A Y < - 0 0 61 -3,-2.0 -37,-0.2 1,-0.1 -38,-0.1 -0.717 56.2-146.1 -91.5 142.0 3.1 21.7 -12.2 50 50 A P S S+ 0 0 87 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.331 82.1 35.8 -85.5 5.3 0.1 21.0 -14.7 51 51 A H S S- 0 0 117 -5,-0.1 2,-0.4 -39,-0.0 -2,-0.1 -0.882 87.6 -96.8-146.7 178.5 -0.2 24.7 -15.6 52 52 A K - 0 0 125 -2,-0.3 2,-0.6 -41,-0.1 -40,-0.0 -0.815 36.1-115.0-104.2 143.7 1.9 27.9 -16.1 53 53 A I - 0 0 4 -2,-0.4 3,-0.1 1,-0.2 6,-0.1 -0.637 27.0-170.6 -78.0 116.6 2.5 30.5 -13.4 54 54 A K + 0 0 161 -2,-0.6 2,-0.2 1,-0.1 -1,-0.2 0.993 67.7 0.6 -71.1 -63.9 0.9 33.8 -14.6 55 55 A S S >> S- 0 0 66 1,-0.0 4,-0.6 22,-0.0 3,-0.5 -0.626 86.0 -92.2-117.6 179.0 2.2 36.2 -11.9 56 56 A G H >> S+ 0 0 4 1,-0.2 4,-1.5 -2,-0.2 3,-0.9 0.835 123.2 63.7 -62.1 -29.2 4.5 35.8 -8.9 57 57 A A H 3> S+ 0 0 69 1,-0.3 4,-2.4 2,-0.2 3,-0.2 0.914 94.5 58.6 -62.5 -40.3 1.4 35.1 -6.8 58 58 A E H <4 S+ 0 0 45 -3,-0.5 4,-0.3 1,-0.2 -1,-0.3 0.755 107.7 48.5 -61.8 -20.3 0.6 32.0 -8.8 59 59 A A H << S+ 0 0 0 -3,-0.9 -1,-0.2 -4,-0.6 -2,-0.2 0.787 109.6 50.2 -89.6 -29.6 4.1 30.7 -7.6 60 60 A K H < S+ 0 0 119 -4,-1.5 -2,-0.2 -3,-0.2 4,-0.2 0.873 101.7 61.4 -76.2 -35.8 3.6 31.6 -3.9 61 61 A K S < S+ 0 0 119 -4,-2.4 -1,-0.2 -5,-0.2 -2,-0.1 0.809 85.3 99.8 -60.7 -26.4 0.2 29.8 -3.8 62 62 A L S > S- 0 0 6 -4,-0.3 3,-0.8 -5,-0.2 2,-0.6 -0.302 88.2-107.2 -60.9 146.9 2.0 26.6 -4.7 63 63 A P T 3 S+ 0 0 115 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 -0.659 105.2 24.1 -79.5 114.3 2.8 24.3 -1.6 64 64 A G T 3 S+ 0 0 48 -2,-0.6 2,-0.4 1,-0.4 -22,-0.2 0.032 96.8 104.7 119.8 -26.0 6.6 24.5 -0.9 65 65 A V < - 0 0 15 -3,-0.8 -1,-0.4 -6,-0.2 -27,-0.1 -0.706 48.7-172.3 -89.7 137.5 7.3 27.9 -2.4 66 66 A G - 0 0 41 -2,-0.4 4,-0.2 -28,-0.1 -4,-0.1 0.053 42.8 -83.6-103.7-144.3 7.7 30.8 0.0 67 67 A T S > S+ 0 0 89 3,-0.2 4,-1.6 2,-0.1 5,-0.1 0.744 119.8 56.2 -99.1 -29.4 8.1 34.6 -0.7 68 68 A K H > S+ 0 0 177 2,-0.2 4,-1.4 3,-0.1 3,-0.1 0.998 118.1 30.0 -66.4 -65.0 11.8 34.6 -1.5 69 69 A I H > S+ 0 0 9 1,-0.2 4,-1.3 2,-0.2 3,-0.3 0.929 121.0 54.2 -61.8 -43.4 11.9 32.0 -4.3 70 70 A A H > S+ 0 0 4 1,-0.2 4,-1.7 -4,-0.2 -1,-0.2 0.874 102.1 59.8 -59.8 -34.2 8.3 33.0 -5.3 71 71 A E H X S+ 0 0 123 -4,-1.6 4,-1.4 1,-0.2 -1,-0.2 0.927 101.6 52.2 -61.0 -42.8 9.5 36.6 -5.6 72 72 A K H X S+ 0 0 106 -4,-1.4 4,-1.1 -3,-0.3 -1,-0.2 0.853 104.0 59.0 -63.0 -31.1 12.0 35.6 -8.3 73 73 A I H >X S+ 0 0 2 -4,-1.3 4,-2.2 1,-0.2 3,-0.7 0.941 99.7 55.7 -64.1 -44.5 9.2 33.9 -10.2 74 74 A D H 3X S+ 0 0 63 -4,-1.7 4,-2.7 1,-0.3 -1,-0.2 0.910 103.9 54.3 -55.5 -40.8 7.3 37.2 -10.5 75 75 A E H 3X>S+ 0 0 103 -4,-1.4 5,-1.2 2,-0.2 4,-1.1 0.843 107.4 53.0 -63.3 -29.4 10.3 38.8 -12.1 76 76 A F H <<5S+ 0 0 64 -4,-1.1 -2,-0.2 -3,-0.7 -1,-0.2 0.963 115.9 36.0 -70.1 -52.1 10.2 36.0 -14.6 77 77 A L H <5S+ 0 0 71 -4,-2.2 -2,-0.2 1,-0.1 -1,-0.2 0.786 113.5 63.8 -72.9 -25.8 6.6 36.5 -15.6 78 78 A A H <5S- 0 0 66 -4,-2.7 -3,-0.2 -5,-0.3 -2,-0.2 0.986 134.6 -25.0 -61.8 -79.5 6.9 40.3 -15.2 79 79 A T T <5S- 0 0 129 -4,-1.1 -3,-0.1 2,-0.2 3,-0.1 0.841 73.4-141.6-102.5 -54.2 9.5 41.1 -18.0 80 80 A G S