==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION 06-APR-06 2DK2 . COMPND 2 MOLECULE: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN R; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA, . 97 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8095.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 59.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 21.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 12.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 19 19.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 136 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 116.4 -22.0 1.0 -2.2 2 2 A S + 0 0 120 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.676 360.0 135.7 -96.4 150.1 -19.9 1.5 0.9 3 3 A S - 0 0 134 -2,-0.3 2,-0.2 2,-0.0 0, 0.0 -0.943 24.5-164.2-169.3-173.8 -17.8 4.6 1.7 4 4 A G + 0 0 74 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.706 13.4 155.0 171.3 135.2 -16.9 7.1 4.3 5 5 A S + 0 0 127 -2,-0.2 2,-0.3 2,-0.0 -2,-0.0 -0.983 6.0 173.6-162.9 163.9 -15.2 10.5 4.7 6 6 A S + 0 0 121 -2,-0.3 2,-0.5 2,-0.1 -2,-0.0 -0.939 49.9 21.2-173.6 151.6 -15.0 13.6 6.9 7 7 A G S S- 0 0 70 -2,-0.3 -2,-0.0 4,-0.1 0, 0.0 -0.761 101.4 -26.8 91.4-125.8 -13.1 16.8 7.4 8 8 A D > - 0 0 107 -2,-0.5 4,-0.8 1,-0.1 5,-0.2 -0.913 42.8-130.1-130.5 157.2 -11.4 18.3 4.3 9 9 A P H > S+ 0 0 100 0, 0.0 4,-2.9 0, 0.0 5,-0.3 0.929 107.5 56.5 -69.8 -47.7 -10.0 16.9 1.0 10 10 A E H > S+ 0 0 149 1,-0.2 4,-1.7 3,-0.2 5,-0.1 0.779 95.9 72.8 -56.1 -26.7 -6.6 18.7 1.3 11 11 A V H 4 S+ 0 0 87 2,-0.2 4,-0.3 1,-0.2 -1,-0.2 0.976 116.2 14.3 -51.7 -68.1 -6.2 17.0 4.7 12 12 A M H >< S+ 0 0 96 -4,-0.8 3,-2.3 -3,-0.3 -2,-0.2 0.862 121.6 66.2 -77.7 -37.9 -5.6 13.5 3.4 13 13 A A H 3< S+ 0 0 22 -4,-2.9 -1,-0.2 1,-0.3 -3,-0.2 0.790 88.7 70.2 -53.7 -28.4 -4.9 14.6 -0.2 14 14 A K T 3< S+ 0 0 163 -4,-1.7 -1,-0.3 -5,-0.3 2,-0.2 0.814 81.7 90.1 -59.7 -30.7 -1.8 16.4 1.2 15 15 A V < + 0 0 17 -3,-2.3 47,-0.1 -4,-0.3 70,-0.1 -0.500 46.4 171.7 -71.7 132.7 -0.3 12.9 1.8 16 16 A K + 0 0 137 -2,-0.2 40,-0.7 68,-0.2 2,-0.4 0.010 54.0 79.1-129.5 25.9 1.8 11.6 -1.1 17 17 A V E -A 55 0A 33 67,-0.3 67,-1.5 38,-0.1 2,-0.4 -0.999 61.3-149.3-139.9 135.2 3.3 8.5 0.5 18 18 A L E -AB 54 83A 2 36,-0.9 2,-0.8 -2,-0.4 36,-0.8 -0.844 8.8-144.6-105.8 139.5 1.9 5.1 1.2 19 19 A F E -AB 53 82A 37 63,-2.2 63,-1.7 -2,-0.4 2,-0.8 -0.830 15.9-169.3-105.7 97.0 2.9 2.9 4.1 20 20 A V E -AB 52 81A 3 32,-1.0 32,-1.6 -2,-0.8 61,-0.2 -0.768 11.2-177.0 -89.8 110.9 2.9 -0.8 3.0 21 21 A R E + B 0 80A 98 59,-1.2 59,-2.6 -2,-0.8 30,-0.2 -0.573 52.1 39.6-102.8 167.9 3.3 -3.1 6.0 22 22 A N S S+ 0 0 75 57,-0.2 58,-0.2 -2,-0.2 -1,-0.2 0.993 74.8 175.0 57.4 75.9 3.5 -6.9 6.3 23 23 A L - 0 0 15 27,-1.7 2,-0.3 56,-0.1 55,-0.1 -0.461 30.5 -97.9-103.9 178.2 5.7 -7.6 3.3 24 24 A A - 0 0 8 -2,-0.2 51,-0.1 1,-0.1 -1,-0.0 -0.741 11.7-151.3-100.3 147.4 7.3 -10.8 2.0 25 25 A T S S+ 0 0 138 -2,-0.3 -1,-0.1 1,-0.2 -2,-0.0 0.732 98.7 52.5 -85.7 -25.0 10.9 -11.9 2.6 26 26 A T S S+ 0 0 119 49,-0.1 -1,-0.2 2,-0.1 49,-0.1 0.787 94.9 86.9 -80.1 -29.4 11.2 -13.8 -0.7 27 27 A V - 0 0 6 47,-0.1 2,-0.3 48,-0.1 -4,-0.0 -0.207 68.4-144.4 -67.9 162.0 10.0 -10.9 -2.7 28 28 A T > - 0 0 63 1,-0.0 4,-2.1 0, 0.0 3,-0.4 -0.841 29.5-102.5-127.3 164.5 12.4 -8.3 -4.0 29 29 A E H > S+ 0 0 74 -2,-0.3 4,-1.6 1,-0.2 5,-0.1 0.780 120.3 61.3 -54.9 -27.1 12.4 -4.5 -4.6 30 30 A E H > S+ 0 0 129 2,-0.2 4,-1.5 1,-0.2 -1,-0.2 0.954 104.7 43.9 -65.6 -51.6 11.9 -5.4 -8.3 31 31 A I H > S+ 0 0 59 -3,-0.4 4,-2.3 1,-0.2 3,-0.4 0.925 114.3 49.8 -59.8 -47.0 8.6 -7.2 -7.8 32 32 A L H X S+ 0 0 9 -4,-2.1 4,-1.1 1,-0.2 -1,-0.2 0.828 110.4 51.6 -61.8 -32.1 7.3 -4.5 -5.5 33 33 A E H X S+ 0 0 64 -4,-1.6 4,-1.2 -5,-0.3 -1,-0.2 0.765 113.9 43.4 -75.7 -26.1 8.3 -1.9 -8.1 34 34 A K H X S+ 0 0 150 -4,-1.5 4,-0.9 -3,-0.4 -2,-0.2 0.731 106.0 61.6 -89.2 -26.1 6.4 -3.8 -10.8 35 35 A S H < S+ 0 0 30 -4,-2.3 -2,-0.2 -5,-0.2 -3,-0.2 0.839 117.5 29.7 -68.6 -33.8 3.4 -4.5 -8.6 36 36 A F H >X S+ 0 0 2 -4,-1.1 3,-2.5 -5,-0.2 4,-1.6 0.771 107.1 71.3 -94.5 -33.0 2.8 -0.7 -8.2 37 37 A S H 3< S+ 0 0 57 -4,-1.2 -2,-0.2 1,-0.3 -3,-0.1 0.787 86.2 70.5 -54.0 -27.8 4.2 0.4 -11.6 38 38 A E T 3< S+ 0 0 171 -4,-0.9 -1,-0.3 1,-0.2 -2,-0.1 0.777 104.5 40.7 -61.2 -26.2 1.2 -1.3 -13.1 39 39 A F T <4 S- 0 0 68 -3,-2.5 2,-0.3 1,-0.3 -2,-0.2 0.909 132.2 -23.1 -87.5 -51.0 -0.9 1.6 -11.7 40 40 A G S < S- 0 0 17 -4,-1.6 2,-0.5 21,-0.1 -1,-0.3 -0.991 79.5 -72.2-161.5 155.9 1.4 4.5 -12.3 41 41 A K - 0 0 148 -2,-0.3 16,-0.8 -3,-0.1 -4,-0.1 -0.319 58.2-142.4 -53.8 102.6 5.0 5.5 -12.9 42 42 A L E -C 56 0A 15 -2,-0.5 14,-0.2 -9,-0.2 3,-0.1 0.049 9.2-149.4 -59.3 175.8 6.5 4.9 -9.5 43 43 A E E - 0 0 95 12,-2.6 2,-0.2 1,-0.2 13,-0.2 0.709 64.4 -32.2-116.7 -46.2 9.2 7.3 -8.1 44 44 A R E -C 55 0A 185 11,-0.8 11,-1.9 2,-0.0 2,-0.4 -0.816 49.7-153.7-179.3 137.2 11.3 5.1 -5.8 45 45 A V E -C 54 0A 6 9,-0.2 2,-0.4 -2,-0.2 9,-0.2 -0.932 9.5-173.4-122.5 145.2 11.0 2.1 -3.5 46 46 A K E -C 53 0A 129 7,-1.3 7,-2.4 -2,-0.4 2,-1.0 -1.000 24.2-130.6-140.0 136.8 13.0 1.1 -0.4 47 47 A K E +C 52 0A 82 -2,-0.4 2,-0.5 5,-0.2 5,-0.2 -0.742 38.3 162.5 -89.2 101.1 12.9 -2.1 1.8 48 48 A L E > -C 51 0A 68 -2,-1.0 3,-0.8 3,-0.8 -2,-0.1 -0.940 55.5 -48.2-125.2 110.4 12.7 -0.9 5.4 49 49 A K T 3 S- 0 0 151 -2,-0.5 -1,-0.1 1,-0.2 -26,-0.0 -0.134 108.4 -32.3 63.3-163.1 11.6 -3.4 8.1 50 50 A D T 3 S+ 0 0 106 -3,-0.1 -27,-1.7 -28,-0.1 -1,-0.2 0.681 135.6 55.7 -61.4 -16.4 8.5 -5.5 7.6 51 51 A Y E < S- C 0 48A 40 -3,-0.8 -3,-0.8 -30,-0.2 2,-0.3 -0.396 76.9-137.8-106.4-174.7 7.1 -2.5 5.6 52 52 A A E -AC 20 47A 2 -32,-1.6 -32,-1.0 -5,-0.2 2,-0.6 -0.967 8.2-131.5-145.0 159.5 8.4 -0.5 2.6 53 53 A F E +AC 19 46A 75 -7,-2.4 -7,-1.3 -2,-0.3 2,-0.4 -0.920 29.5 173.4-119.2 107.2 8.6 3.1 1.4 54 54 A V E -AC 18 45A 2 -36,-0.8 -36,-0.9 -2,-0.6 2,-0.3 -0.903 14.7-153.2-115.3 141.9 7.4 3.8 -2.1 55 55 A H E -AC 17 44A 82 -11,-1.9 -12,-2.6 -2,-0.4 -11,-0.8 -0.839 5.9-156.0-113.4 150.5 7.0 7.2 -3.8 56 56 A F E - C 0 42A 11 -40,-0.7 -14,-0.2 -2,-0.3 6,-0.1 -0.893 31.8-114.5-124.7 154.9 4.6 8.3 -6.5 57 57 A E S S- 0 0 118 -16,-0.8 2,-0.3 -2,-0.3 -15,-0.1 0.779 98.0 -16.8 -55.4 -27.0 4.8 11.0 -9.2 58 58 A D S > S- 0 0 110 1,-0.1 4,-0.7 -42,-0.0 3,-0.1 -0.925 74.3 -90.4-162.1-176.6 1.8 12.5 -7.3 59 59 A R H > S+ 0 0 114 -2,-0.3 4,-3.0 1,-0.2 3,-0.4 0.825 117.0 63.4 -77.3 -33.2 -1.0 11.8 -4.8 60 60 A G H > S+ 0 0 42 1,-0.2 4,-1.5 2,-0.2 -1,-0.2 0.808 103.9 48.5 -61.1 -29.9 -3.5 10.7 -7.5 61 61 A A H 4 S+ 0 0 24 2,-0.2 4,-0.5 3,-0.1 -1,-0.2 0.744 113.6 47.0 -81.3 -25.2 -1.2 7.8 -8.4 62 62 A A H X S+ 0 0 2 -4,-0.7 4,-3.2 -3,-0.4 5,-0.3 0.887 115.4 43.3 -82.1 -43.4 -0.9 6.8 -4.7 63 63 A V H X S+ 0 0 52 -4,-3.0 4,-2.8 2,-0.2 5,-0.2 0.967 113.2 49.7 -66.7 -54.9 -4.6 7.0 -3.8 64 64 A K H X S+ 0 0 137 -4,-1.5 4,-0.8 -5,-0.3 -1,-0.2 0.806 119.8 41.6 -54.6 -30.1 -5.8 5.3 -7.0 65 65 A A H >> S+ 0 0 0 -4,-0.5 4,-3.3 2,-0.2 3,-0.8 0.963 114.5 45.0 -81.5 -62.6 -3.3 2.6 -6.2 66 66 A M H 3X S+ 0 0 25 -4,-3.2 4,-2.1 1,-0.2 -2,-0.2 0.801 106.6 66.6 -52.0 -30.1 -3.5 2.2 -2.5 67 67 A D H 3< S+ 0 0 96 -4,-2.8 -1,-0.2 -5,-0.3 -2,-0.2 0.946 116.1 22.9 -57.3 -52.1 -7.3 2.2 -3.0 68 68 A E H << S+ 0 0 140 -4,-0.8 -2,-0.2 -3,-0.8 -1,-0.2 0.910 120.8 57.6 -81.7 -47.1 -7.3 -1.1 -4.9 69 69 A M H >< S+ 0 0 8 -4,-3.3 3,-0.9 -5,-0.1 2,-0.4 0.841 80.7 105.6 -52.0 -35.5 -4.0 -2.5 -3.5 70 70 A N T 3< S+ 0 0 96 -4,-2.1 10,-0.1 -5,-0.4 -4,-0.0 -0.290 92.2 13.2 -52.0 104.5 -5.6 -2.1 -0.1 71 71 A G T 3 S+ 0 0 68 8,-0.5 -1,-0.3 -2,-0.4 2,-0.2 0.860 95.0 145.3 93.2 43.5 -6.3 -5.8 0.8 72 72 A K < - 0 0 105 -3,-0.9 7,-1.1 7,-0.5 2,-0.6 -0.660 47.8-124.1-109.3 166.6 -4.4 -7.6 -1.9 73 73 A E E +D 78 0B 144 -2,-0.2 2,-0.5 5,-0.2 3,-0.2 -0.908 29.5 178.3-116.3 105.4 -2.5 -10.9 -1.9 74 74 A I E > S-D 77 0B 22 3,-1.6 3,-2.1 -2,-0.6 -47,-0.1 -0.918 71.7 -14.8-110.4 127.3 1.2 -10.7 -2.9 75 75 A E T 3 S- 0 0 105 -2,-0.5 -1,-0.2 1,-0.3 -49,-0.1 0.845 123.2 -63.5 53.0 35.6 3.4 -13.7 -2.9 76 76 A G T 3 S+ 0 0 55 1,-0.2 2,-0.4 -3,-0.2 -1,-0.3 0.764 112.1 123.9 61.7 24.7 0.8 -15.5 -0.8 77 77 A E E < S-D 74 0B 97 -3,-2.1 -3,-1.6 -55,-0.0 2,-1.1 -0.962 70.4-116.8-122.0 135.1 1.4 -13.0 1.9 78 78 A E E -D 73 0B 177 -2,-0.4 2,-0.4 -5,-0.2 -5,-0.2 -0.547 36.8-164.1 -70.9 100.5 -1.2 -10.7 3.6 79 79 A I - 0 0 13 -7,-1.1 -8,-0.5 -2,-1.1 -7,-0.5 -0.726 0.7-154.8 -90.9 134.5 0.0 -7.2 2.6 80 80 A E E -B 21 0A 100 -59,-2.6 -59,-1.2 -2,-0.4 2,-0.4 -0.750 5.8-163.4-107.8 155.4 -1.3 -4.2 4.5 81 81 A I E +B 20 0A 8 -2,-0.3 2,-0.3 -61,-0.2 -61,-0.2 -0.993 11.9 167.8-142.1 132.3 -1.6 -0.6 3.4 82 82 A V E -B 19 0A 66 -63,-1.7 -63,-2.2 -2,-0.4 2,-0.2 -0.999 42.6 -98.8-145.5 142.1 -2.1 2.6 5.4 83 83 A L E -B 18 0A 62 -2,-0.3 2,-1.0 -65,-0.2 -65,-0.2 -0.408 35.9-137.2 -61.4 121.1 -1.9 6.3 4.7 84 84 A A - 0 0 30 -67,-1.5 -67,-0.3 -2,-0.2 -68,-0.2 -0.712 21.7-158.3 -85.7 101.6 1.5 7.6 5.9 85 85 A K - 0 0 173 -2,-1.0 -73,-0.0 1,-0.1 -67,-0.0 -0.460 20.1-105.3 -79.6 151.3 0.8 10.9 7.6 86 86 A P - 0 0 71 0, 0.0 -1,-0.1 0, 0.0 -71,-0.0 -0.147 28.2-107.3 -69.7 167.8 3.6 13.5 8.2 87 87 A P - 0 0 113 0, 0.0 -2,-0.0 0, 0.0 3,-0.0 0.685 54.4-159.4 -69.8 -18.5 5.3 14.3 11.5 88 88 A D - 0 0 128 1,-0.1 2,-1.2 2,-0.0 -3,-0.0 0.077 40.0 -47.6 61.3 179.7 3.4 17.6 11.7 89 89 A K - 0 0 208 0, 0.0 2,-0.7 0, 0.0 -1,-0.1 -0.713 62.7-173.3 -89.4 93.5 4.5 20.5 13.8 90 90 A K - 0 0 178 -2,-1.2 2,-0.1 -3,-0.0 -2,-0.0 -0.792 5.9-173.0 -92.1 115.8 5.2 19.0 17.2 91 91 A R - 0 0 235 -2,-0.7 2,-0.4 1,-0.0 -1,-0.0 -0.350 21.4-112.7 -97.7-179.2 6.0 21.6 19.9 92 92 A S - 0 0 113 -2,-0.1 -2,-0.0 0, 0.0 -1,-0.0 -0.968 27.7-164.6-122.0 130.5 7.2 21.3 23.4 93 93 A G - 0 0 68 -2,-0.4 0, 0.0 1,-0.2 0, 0.0 -0.379 32.4 -71.9-102.6-177.1 5.2 22.2 26.5 94 94 A P - 0 0 134 0, 0.0 -1,-0.2 0, 0.0 0, 0.0 -0.154 26.6-159.6 -69.8 167.7 6.0 22.8 30.2 95 95 A S - 0 0 120 2,-0.1 -2,-0.0 0, 0.0 0, 0.0 0.670 17.7-152.2-117.8 -37.3 7.0 20.0 32.7 96 96 A S 0 0 124 1,-0.2 0, 0.0 0, 0.0 0, 0.0 0.952 360.0 360.0 57.4 93.5 6.2 21.6 36.1 97 97 A G 0 0 130 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 -0.950 360.0 360.0 163.6 360.0 8.6 20.0 38.6