==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 06-APR-06 2DK7 . COMPND 2 MOLECULE: TRANSCRIPTION ELONGATION REGULATOR 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA, . 73 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5726.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 28 38.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 20.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 4.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 8 11.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 139 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 48.4 17.0 0.0 -12.6 2 2 A S - 0 0 114 1,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.952 360.0-151.2-137.6 156.5 13.6 -1.4 -11.6 3 3 A S - 0 0 127 -2,-0.3 2,-0.1 1,-0.1 -1,-0.1 0.906 46.0-124.9 -90.7 -54.4 11.8 -2.2 -8.3 4 4 A G - 0 0 49 2,-0.0 2,-0.7 3,-0.0 -1,-0.1 -0.412 43.5 -37.4 123.7 159.8 9.4 -5.0 -9.4 5 5 A S S S- 0 0 114 -2,-0.1 0, 0.0 1,-0.1 0, 0.0 -0.324 72.2-118.5 -54.8 99.6 5.8 -5.9 -9.3 6 6 A S S S- 0 0 94 -2,-0.7 -1,-0.1 2,-0.1 -2,-0.0 -0.148 80.2 -4.9 -44.2 120.3 4.8 -4.5 -5.9 7 7 A G S S- 0 0 32 1,-0.2 2,-0.4 -3,-0.0 -3,-0.0 0.444 73.7-119.1 67.1 146.6 3.6 -7.4 -3.9 8 8 A K S S+ 0 0 185 2,-0.1 2,-0.3 0, 0.0 -1,-0.2 -0.704 72.3 85.0-122.8 79.2 3.2 -11.0 -5.1 9 9 A A - 0 0 77 -2,-0.4 0, 0.0 18,-0.0 0, 0.0 -0.890 66.1-119.9-173.6 141.7 -0.4 -12.0 -4.8 10 10 A K - 0 0 179 -2,-0.3 18,-0.6 1,-0.1 -2,-0.1 -0.656 34.4-113.2 -90.4 143.6 -3.7 -11.8 -6.7 11 11 A P E -A 27 0A 65 0, 0.0 16,-0.3 0, 0.0 3,-0.1 -0.222 14.5-158.1 -69.8 161.7 -6.8 -10.0 -5.2 12 12 A V E S+ 0 0 78 14,-1.8 2,-0.3 1,-0.4 15,-0.2 0.705 73.8 10.7-110.3 -34.6 -10.0 -11.9 -4.2 13 13 A A E -A 26 0A 17 13,-0.6 13,-3.0 2,-0.0 -1,-0.4 -0.998 59.4-165.5-148.8 147.1 -12.5 -9.0 -4.3 14 14 A T E +A 25 0A 87 -2,-0.3 11,-0.2 11,-0.2 10,-0.1 -0.998 7.9 174.9-137.5 138.5 -12.7 -5.4 -5.5 15 15 A A E -A 24 0A 21 9,-2.8 9,-1.7 -2,-0.4 2,-0.2 -0.979 30.8-119.6-147.1 130.0 -15.1 -2.6 -4.8 16 16 A P E -A 23 0A 102 0, 0.0 7,-0.3 0, 0.0 6,-0.1 -0.480 31.8-122.7 -69.8 129.9 -15.1 1.1 -5.8 17 17 A I - 0 0 8 5,-3.0 2,-0.2 -2,-0.2 39,-0.0 -0.545 26.9-114.3 -76.6 134.6 -15.1 3.5 -2.8 18 18 A P S S+ 0 0 63 0, 0.0 2,-1.3 0, 0.0 38,-0.2 -0.444 93.2 1.5 -69.7 136.1 -17.9 6.1 -2.7 19 19 A G S S+ 0 0 78 -2,-0.2 -2,-0.0 1,-0.1 0, 0.0 -0.230 121.5 76.8 83.5 -48.8 -17.0 9.7 -3.1 20 20 A T S S- 0 0 13 -2,-1.3 -3,-0.1 2,-0.1 -1,-0.1 -0.724 81.9-130.0 -98.7 146.5 -13.3 8.9 -3.6 21 21 A P S S+ 0 0 66 0, 0.0 17,-0.3 0, 0.0 18,-0.1 0.495 77.5 111.1 -69.7 -2.4 -11.8 7.4 -6.8 22 22 A W - 0 0 10 14,-0.2 -5,-3.0 -6,-0.1 2,-0.4 -0.311 56.9-151.4 -72.0 157.5 -10.2 4.8 -4.6 23 23 A C E -AB 16 35A 14 12,-2.4 12,-1.8 -7,-0.3 2,-0.2 -0.946 13.3-130.3-137.7 114.8 -11.2 1.1 -4.8 24 24 A V E -AB 15 34A 0 -9,-1.7 -9,-2.8 -2,-0.4 2,-0.5 -0.441 28.2-172.0 -64.7 124.7 -11.0 -1.3 -1.9 25 25 A V E -AB 14 33A 5 8,-2.9 8,-3.0 -2,-0.2 -11,-0.2 -0.979 6.0-157.1-125.9 124.1 -9.3 -4.5 -2.9 26 26 A W E -AB 13 32A 12 -13,-3.0 -14,-1.8 -2,-0.5 -13,-0.6 -0.472 8.0-156.1 -93.1 166.8 -9.1 -7.6 -0.8 27 27 A T E -A 11 0A 16 4,-1.9 3,-0.4 -16,-0.3 4,-0.2 -0.748 32.3-104.0-133.0-179.9 -6.5 -10.5 -1.0 28 28 A G S S+ 0 0 62 -18,-0.6 2,-0.3 1,-0.2 4,-0.0 0.656 109.7 71.9 -81.9 -16.2 -6.2 -14.1 -0.1 29 29 A D S S- 0 0 121 1,-0.1 -1,-0.2 0, 0.0 3,-0.1 -0.177 120.8 -99.9 -91.7 40.9 -4.0 -13.3 2.9 30 30 A E S S+ 0 0 189 -3,-0.4 2,-0.2 -2,-0.3 -2,-0.1 0.871 90.9 116.4 42.9 45.3 -6.9 -11.9 4.9 31 31 A R - 0 0 155 -4,-0.2 -4,-1.9 2,-0.0 2,-0.3 -0.689 48.5-156.7-129.6-177.3 -5.7 -8.4 3.8 32 32 A V E -B 26 0A 32 -6,-0.3 -6,-0.3 -2,-0.2 2,-0.2 -0.920 6.1-173.3-166.5 138.3 -6.9 -5.4 1.8 33 33 A F E -B 25 0A 37 -8,-3.0 -8,-2.9 -2,-0.3 2,-0.5 -0.760 26.7-108.6-128.2 174.5 -5.4 -2.5 -0.0 34 34 A F E -B 24 0A 10 9,-0.5 9,-1.7 11,-0.3 2,-0.3 -0.919 30.9-171.7-111.5 130.3 -6.5 0.7 -1.8 35 35 A Y E -BC 23 42A 74 -12,-1.8 -12,-2.4 -2,-0.5 7,-0.2 -0.858 13.5-154.1-119.6 154.6 -6.3 1.1 -5.6 36 36 A N E >> - C 0 41A 8 5,-2.0 5,-1.2 -2,-0.3 4,-0.7 -0.851 9.3-177.1-132.6 97.7 -6.9 4.1 -7.8 37 37 A P T 45S+ 0 0 68 0, 0.0 -1,-0.1 0, 0.0 -15,-0.1 0.492 88.1 56.6 -69.7 -2.1 -7.9 3.3 -11.4 38 38 A T T 45S+ 0 0 105 -17,-0.3 -16,-0.1 3,-0.1 -2,-0.0 0.762 121.3 22.2 -98.3 -33.5 -7.8 7.1 -12.1 39 39 A T T 45S- 0 0 84 -3,-0.5 3,-0.1 2,-0.1 -1,-0.1 0.112 99.2-122.9-119.9 18.3 -4.2 7.7 -11.0 40 40 A R T <5 + 0 0 209 -4,-0.7 2,-0.5 1,-0.2 -5,-0.0 0.834 62.1 151.5 41.1 39.4 -2.9 4.2 -11.5 41 41 A L E < +C 36 0A 71 -5,-1.2 -5,-2.0 2,-0.0 2,-0.4 -0.871 24.3 179.3-105.1 131.4 -1.9 4.4 -7.8 42 42 A S E +C 35 0A 69 -2,-0.5 -7,-0.2 -7,-0.2 2,-0.2 -0.924 6.7 172.2-135.5 109.6 -1.7 1.2 -5.7 43 43 A M - 0 0 71 -9,-1.7 -9,-0.5 -2,-0.4 3,-0.0 -0.543 34.5-136.4-108.2 175.6 -0.6 1.4 -2.0 44 44 A W S S+ 0 0 121 -2,-0.2 2,-0.2 -11,-0.2 -12,-0.2 0.558 86.2 46.4-106.5 -15.2 -0.6 -1.1 0.8 45 45 A D S S- 0 0 125 -11,-0.1 -11,-0.3 -12,-0.1 -2,-0.1 -0.744 100.4 -80.1-122.9 171.3 -2.0 1.2 3.5 46 46 A R - 0 0 86 -2,-0.2 -2,-0.0 -13,-0.1 5,-0.0 -0.617 50.1-142.3 -76.8 111.8 -4.8 3.7 3.8 47 47 A P >> - 0 0 8 0, 0.0 4,-1.6 0, 0.0 3,-1.4 -0.220 20.7-110.8 -69.8 161.9 -3.8 7.0 2.1 48 48 A D T 34 S+ 0 0 114 1,-0.3 -2,-0.0 2,-0.2 0, 0.0 0.916 112.0 74.0 -59.3 -45.5 -4.7 10.4 3.5 49 49 A D T 34 S+ 0 0 117 1,-0.3 -1,-0.3 3,-0.1 -27,-0.1 0.745 111.3 32.0 -40.3 -25.6 -7.0 11.0 0.5 50 50 A L T X4 S+ 0 0 0 -3,-1.4 3,-2.6 2,-0.1 -1,-0.3 0.723 91.5 111.4-103.7 -31.8 -9.2 8.6 2.4 51 51 A I T 3< S+ 0 0 103 -4,-1.6 3,-0.1 1,-0.3 -3,-0.0 -0.222 82.1 28.5 -48.4 117.1 -8.2 9.4 5.9 52 52 A G T 3 S+ 0 0 74 1,-0.5 -1,-0.3 2,-0.0 2,-0.2 -0.091 92.9 108.0 121.0 -34.7 -11.3 11.0 7.5 53 53 A R < - 0 0 120 -3,-2.6 4,-0.5 1,-0.1 -1,-0.5 -0.509 53.5-156.1 -78.4 144.5 -14.0 9.4 5.5 54 54 A A S >> S+ 0 0 75 -2,-0.2 4,-2.6 2,-0.2 3,-0.5 0.836 87.6 64.9 -86.9 -37.7 -16.3 6.8 7.2 55 55 A D H 3> S+ 0 0 65 1,-0.2 4,-2.5 2,-0.2 5,-0.3 0.941 95.9 57.4 -49.5 -56.2 -17.3 5.0 4.0 56 56 A V H 3> S+ 0 0 0 1,-0.2 4,-1.5 2,-0.2 -1,-0.2 0.866 112.2 43.3 -43.3 -44.3 -13.7 3.8 3.3 57 57 A D H <> S+ 0 0 72 -3,-0.5 4,-2.9 -4,-0.5 3,-0.3 0.983 108.2 55.5 -67.6 -59.7 -13.8 2.1 6.7 58 58 A K H X S+ 0 0 138 -4,-2.6 4,-3.0 1,-0.3 -2,-0.2 0.884 107.1 52.5 -38.6 -54.0 -17.2 0.6 6.5 59 59 A I H < S+ 0 0 33 -4,-2.5 -1,-0.3 1,-0.2 -2,-0.2 0.935 112.3 43.6 -50.1 -54.2 -16.3 -1.2 3.3 60 60 A I H < S+ 0 0 51 -4,-1.5 -1,-0.2 -3,-0.3 -2,-0.2 0.835 112.8 55.1 -62.0 -33.2 -13.2 -2.7 4.9 61 61 A Q H < S+ 0 0 146 -4,-2.9 -2,-0.2 1,-0.3 -1,-0.2 0.945 120.9 26.5 -65.5 -49.9 -15.2 -3.5 8.0 62 62 A E S < S- 0 0 124 -4,-3.0 -1,-0.3 -5,-0.2 -2,-0.1 -0.780 83.9-164.2-119.9 86.9 -17.9 -5.5 6.1 63 63 A P > - 0 0 16 0, 0.0 4,-1.4 0, 0.0 3,-0.2 -0.343 19.2-136.5 -69.8 148.2 -16.3 -6.9 2.8 64 64 A P T 4 S+ 0 0 49 0, 0.0 -49,-0.0 0, 0.0 -5,-0.0 0.940 99.9 65.0 -69.7 -49.9 -18.6 -8.2 0.0 65 65 A H T 4 S+ 0 0 91 1,-0.2 -51,-0.0 5,-0.0 -52,-0.0 0.804 107.8 47.0 -43.5 -33.1 -16.6 -11.4 -0.7 66 66 A K T 4 S+ 0 0 126 -3,-0.2 -1,-0.2 4,-0.1 5,-0.1 0.990 108.0 51.7 -73.6 -73.2 -17.6 -12.4 2.8 67 67 A K S < S+ 0 0 122 -4,-1.4 -5,-0.0 1,-0.2 0, 0.0 0.115 83.4 65.2 -55.2 177.8 -21.4 -11.7 3.0 68 68 A S S S- 0 0 123 2,-0.0 -1,-0.2 0, 0.0 -3,-0.0 0.915 129.3 -11.4 69.4 44.5 -23.8 -12.9 0.3 69 69 A G S S- 0 0 62 4,-0.0 2,-0.1 2,-0.0 -2,-0.0 0.839 81.8-136.0 96.3 83.4 -23.2 -16.6 1.2 70 70 A P - 0 0 83 0, 0.0 -4,-0.1 0, 0.0 -3,-0.1 -0.395 6.0-154.0 -69.8 143.1 -20.3 -17.3 3.6 71 71 A S S S+ 0 0 130 -2,-0.1 -5,-0.0 -5,-0.1 -2,-0.0 0.968 91.9 32.1 -80.3 -63.6 -18.0 -20.2 2.8 72 72 A S 0 0 130 1,-0.3 -1,-0.0 0, 0.0 0, 0.0 0.956 360.0 360.0 -59.7 -53.3 -16.6 -21.1 6.2 73 73 A G 0 0 92 -4,-0.0 -1,-0.3 0, 0.0 -2,-0.1 -0.000 360.0 360.0 -64.4 360.0 -19.7 -20.1 8.1