==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 12-APR-06 2DKM . COMPND 2 MOLECULE: COLLAGEN ALPHA-1(XX) CHAIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.SATO,K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN . 104 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7404.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 56.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 34 32.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 20 19.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 2 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 134 0, 0.0 2,-0.9 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 160.3 11.2 -15.3 13.1 2 2 A S - 0 0 114 1,-0.2 0, 0.0 2,-0.0 0, 0.0 -0.755 360.0-148.9 -90.0 103.5 12.4 -16.7 9.8 3 3 A S - 0 0 130 -2,-0.9 -1,-0.2 1,-0.1 0, 0.0 0.839 50.2-101.7 -34.6 -48.0 13.9 -20.1 10.4 4 4 A G S S+ 0 0 58 1,-0.2 2,-0.3 -3,-0.1 -1,-0.1 0.700 73.7 120.7 118.7 66.9 16.3 -19.4 7.5 5 5 A S - 0 0 104 3,-0.1 2,-0.8 0, 0.0 -1,-0.2 -0.993 54.7-126.9-154.6 150.0 15.3 -21.2 4.3 6 6 A S S S+ 0 0 129 -2,-0.3 3,-0.1 1,-0.1 28,-0.1 -0.844 76.2 78.5-104.0 101.2 14.4 -20.3 0.7 7 7 A G + 0 0 63 -2,-0.8 -1,-0.1 1,-0.5 0, 0.0 0.158 69.8 62.8-158.2 -70.8 11.1 -21.9 -0.3 8 8 A P S S- 0 0 100 0, 0.0 -1,-0.5 0, 0.0 25,-0.1 -0.203 71.5-125.8 -69.7 163.4 7.8 -20.3 0.9 9 9 A L - 0 0 34 77,-0.1 79,-0.3 25,-0.1 71,-0.1 -0.752 24.8-162.8-116.2 83.9 6.6 -16.9 -0.1 10 10 A P - 0 0 69 0, 0.0 23,-0.3 0, 0.0 3,-0.1 -0.498 16.3-133.1 -69.8 122.9 5.9 -14.9 3.1 11 11 A P - 0 0 37 0, 0.0 2,-0.3 0, 0.0 68,-0.1 -0.123 36.5 -73.4 -69.7 169.8 3.7 -11.8 2.4 12 12 A P + 0 0 4 0, 0.0 66,-0.1 0, 0.0 3,-0.1 -0.500 56.1 155.5 -69.8 125.3 4.3 -8.3 3.8 13 13 A R + 0 0 191 -2,-0.3 2,-2.3 -3,-0.1 78,-0.0 0.629 57.1 78.5-119.6 -31.7 3.6 -8.0 7.5 14 14 A A + 0 0 49 17,-0.1 2,-0.6 2,-0.0 -1,-0.1 -0.306 63.6 161.6 -78.5 56.0 5.7 -5.1 8.6 15 15 A L + 0 0 29 -2,-2.3 2,-0.3 14,-0.2 14,-0.2 -0.703 6.8 157.8 -83.7 116.8 3.3 -2.6 7.1 16 16 A T E -A 28 0A 90 12,-2.2 12,-1.7 -2,-0.6 2,-0.7 -0.995 45.1-112.0-141.4 146.1 3.9 0.9 8.6 17 17 A L E -A 27 0A 48 -2,-0.3 10,-0.2 10,-0.2 3,-0.1 -0.673 22.8-169.8 -80.7 111.5 3.1 4.4 7.5 18 18 A A E S- 0 0 57 -2,-0.7 2,-0.3 8,-0.6 -1,-0.2 0.883 72.8 -5.0 -66.9 -39.5 6.3 6.2 6.7 19 19 A A E -A 26 0A 44 7,-1.0 7,-1.3 -3,-0.1 2,-0.6 -0.991 59.2-140.1-156.2 150.1 4.6 9.6 6.4 20 20 A V E +A 25 0A 67 -2,-0.3 5,-0.2 5,-0.1 76,-0.1 -0.906 28.4 169.2-118.9 104.4 1.1 11.1 6.5 21 21 A T - 0 0 50 3,-1.3 3,-0.1 -2,-0.6 74,-0.1 -0.937 37.1-140.9-118.5 137.0 0.4 13.8 4.0 22 22 A P S S+ 0 0 22 0, 0.0 3,-0.1 0, 0.0 77,-0.1 0.502 109.5 39.6 -69.8 -2.8 -3.0 15.3 3.2 23 23 A R S S+ 0 0 151 1,-0.4 45,-1.7 46,-0.1 44,-1.2 0.573 127.4 17.1-117.9 -22.2 -1.8 15.5 -0.4 24 24 A T E - B 0 66A 35 42,-0.2 -3,-1.3 43,-0.2 2,-0.4 -0.988 62.6-139.4-150.9 156.5 0.0 12.2 -0.7 25 25 A V E -AB 20 65A 7 40,-1.5 40,-2.4 -2,-0.3 2,-0.4 -0.978 13.9-165.7-124.8 126.1 0.3 8.8 1.2 26 26 A H E +AB 19 64A 44 -7,-1.3 -7,-1.0 -2,-0.4 -8,-0.6 -0.921 9.8 178.8-113.1 133.5 3.6 7.0 1.8 27 27 A L E -AB 17 63A 5 36,-2.3 36,-1.3 -2,-0.4 2,-0.3 -0.938 7.9-170.1-131.9 154.3 3.8 3.3 2.9 28 28 A T E +AB 16 62A 47 -12,-1.7 -12,-2.2 -2,-0.3 2,-0.2 -0.986 9.2 169.3-147.9 133.7 6.6 0.9 3.6 29 29 A W - 0 0 12 32,-1.2 -14,-0.2 -2,-0.3 -2,-0.0 -0.797 40.0 -80.4-134.5 176.3 6.7 -2.8 4.2 30 30 A Q - 0 0 123 -2,-0.2 2,-0.0 1,-0.1 -16,-0.0 -0.580 48.5-110.4 -83.2 142.1 9.2 -5.7 4.5 31 31 A P - 0 0 73 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 -0.329 29.8-123.3 -69.7 150.9 10.5 -7.4 1.4 32 32 A S - 0 0 17 3,-0.1 2,-0.8 49,-0.1 -23,-0.1 -0.610 17.2-117.6 -95.5 156.5 9.5 -10.9 0.4 33 33 A A S S+ 0 0 56 -23,-0.3 -26,-0.1 -2,-0.2 3,-0.1 -0.820 96.3 3.6 -97.5 105.3 11.9 -13.9 -0.2 34 34 A G S S+ 0 0 54 -2,-0.8 -1,-0.2 1,-0.5 -25,-0.1 -0.223 97.5 114.4 118.8 -43.5 11.6 -15.1 -3.8 35 35 A A - 0 0 15 1,-0.1 -1,-0.5 48,-0.0 47,-0.3 -0.261 46.5-163.4 -61.6 147.5 9.1 -12.6 -5.2 36 36 A T S S+ 0 0 92 45,-1.6 2,-0.3 1,-0.3 46,-0.2 0.674 70.7 9.2-104.1 -25.8 10.4 -10.2 -7.9 37 37 A H E -C 81 0B 45 44,-2.6 44,-2.2 24,-0.0 2,-0.4 -0.941 65.4-130.9-148.8 168.4 7.7 -7.6 -7.7 38 38 A Y E -CD 80 58B 18 20,-1.7 20,-1.7 -2,-0.3 2,-0.6 -0.981 16.3-131.6-129.6 139.2 4.6 -6.6 -5.7 39 39 A L E -CD 79 57B 31 40,-1.7 40,-0.8 -2,-0.4 2,-0.6 -0.789 19.2-161.3 -92.4 119.7 1.1 -5.7 -6.8 40 40 A V E -CD 78 56B 0 16,-3.3 16,-2.6 -2,-0.6 2,-0.7 -0.888 6.0-172.4-105.2 114.4 -0.2 -2.5 -5.3 41 41 A R E -CD 77 55B 89 36,-1.6 36,-1.6 -2,-0.6 2,-0.8 -0.903 5.1-163.7-110.1 109.2 -4.0 -2.1 -5.4 42 42 A C E +CD 76 54B 22 12,-1.9 12,-3.0 -2,-0.7 34,-0.2 -0.815 20.1 165.1 -95.5 109.5 -5.3 1.4 -4.4 43 43 A S E -C 75 0B 13 32,-2.6 32,-3.0 -2,-0.8 2,-0.2 -0.956 38.9-107.1-127.5 144.5 -9.0 1.3 -3.6 44 44 A P E -C 74 0B 59 0, 0.0 30,-0.2 0, 0.0 9,-0.1 -0.456 15.3-143.2 -69.8 134.3 -11.3 3.8 -1.8 45 45 A A S S+ 0 0 43 28,-1.5 29,-0.2 -2,-0.2 48,-0.0 0.625 85.6 69.8 -71.5 -12.5 -12.4 2.7 1.7 46 46 A S S S- 0 0 44 27,-0.4 26,-0.0 2,-0.2 0, 0.0 -0.860 81.9-133.3-111.0 143.1 -15.8 4.4 0.9 47 47 A P S S+ 0 0 144 0, 0.0 2,-0.6 0, 0.0 -1,-0.1 0.467 81.2 102.5 -69.8 -0.0 -18.4 3.1 -1.6 48 48 A K + 0 0 148 2,-0.0 -2,-0.2 0, 0.0 2,-0.2 -0.769 55.7 70.9 -90.8 122.7 -18.6 6.7 -2.9 49 49 A G - 0 0 62 -2,-0.6 0, 0.0 1,-0.1 0, 0.0 -0.501 57.8-138.4 144.6 145.9 -16.7 7.3 -6.1 50 50 A E S S+ 0 0 189 -2,-0.2 -1,-0.1 2,-0.1 2,-0.0 0.895 79.1 84.7 -92.3 -53.1 -16.8 6.6 -9.9 51 51 A E S S- 0 0 179 1,-0.1 3,-0.1 3,-0.0 0, 0.0 -0.291 78.6-131.4 -55.0 127.0 -13.2 5.8 -10.7 52 52 A E - 0 0 161 1,-0.2 2,-0.1 -9,-0.1 -1,-0.1 0.045 39.4 -63.8 -69.3-175.4 -12.5 2.2 -9.9 53 53 A E - 0 0 75 -10,-0.1 2,-0.3 1,-0.1 -10,-0.2 -0.394 51.8-122.5 -73.3 150.4 -9.5 0.9 -7.9 54 54 A R E -D 42 0B 170 -12,-3.0 -12,-1.9 -3,-0.1 2,-0.4 -0.709 19.8-163.0 -96.1 145.9 -6.0 1.4 -9.2 55 55 A E E +D 41 0B 113 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.2 -0.936 19.9 156.6-133.5 111.0 -3.5 -1.4 -9.9 56 56 A V E -D 40 0B 53 -16,-2.6 -16,-3.3 -2,-0.4 2,-0.5 -0.907 31.9-133.0-131.4 159.2 0.2 -0.8 -10.3 57 57 A Q E -D 39 0B 126 -2,-0.3 2,-0.3 -18,-0.2 -18,-0.2 -0.955 21.4-172.8-117.7 126.8 3.4 -2.8 -9.9 58 58 A V E -D 38 0B 26 -20,-1.7 -20,-1.7 -2,-0.5 5,-0.1 -0.859 24.7-146.6-117.3 152.3 6.4 -1.5 -7.9 59 59 A G S S+ 0 0 61 -2,-0.3 -1,-0.1 -22,-0.2 -2,-0.0 0.723 84.2 59.5 -86.6 -23.2 9.9 -2.9 -7.6 60 60 A R S S- 0 0 143 2,-0.3 -22,-0.1 -22,-0.1 -2,-0.1 -0.770 85.6-121.8-108.1 152.8 10.4 -1.7 -4.0 61 61 A P S S+ 0 0 33 0, 0.0 -32,-1.2 0, 0.0 2,-0.5 0.428 94.0 83.9 -69.7 3.0 8.3 -2.4 -0.9 62 62 A E E +B 28 0A 89 -34,-0.2 2,-0.4 2,-0.0 -2,-0.3 -0.937 56.9 175.4-114.1 127.8 7.7 1.3 -0.6 63 63 A V E -B 27 0A 16 -36,-1.3 -36,-2.3 -2,-0.5 2,-0.4 -0.979 13.8-161.1-132.5 144.2 5.0 3.1 -2.6 64 64 A L E -B 26 0A 88 -2,-0.4 2,-0.9 -38,-0.2 -38,-0.2 -0.974 8.3-152.4-129.3 119.7 3.7 6.7 -2.6 65 65 A L E -B 25 0A 29 -40,-2.4 -40,-1.5 -2,-0.4 2,-0.2 -0.786 17.0-159.3 -93.6 103.9 0.3 7.7 -3.9 66 66 A D E +B 24 0A 131 -2,-0.9 -42,-0.2 -42,-0.2 -2,-0.0 -0.575 63.6 39.7 -83.0 143.8 0.5 11.3 -5.2 67 67 A G S S+ 0 0 69 -44,-1.2 2,-0.2 -2,-0.2 -43,-0.2 0.955 74.8 148.7 83.5 75.9 -2.7 13.4 -5.5 68 68 A L - 0 0 21 -45,-1.7 -1,-0.1 -46,-0.0 -2,-0.0 -0.718 41.8-108.6-129.5 180.0 -5.0 12.6 -2.6 69 69 A E > - 0 0 98 -2,-0.2 3,-0.7 3,-0.1 2,-0.2 -0.904 32.3-108.2-117.5 143.9 -7.6 14.3 -0.5 70 70 A P T 3 S+ 0 0 41 0, 0.0 28,-0.2 0, 0.0 -47,-0.0 -0.459 100.5 15.5 -69.7 133.9 -7.4 15.5 3.2 71 71 A G T 3 S+ 0 0 39 26,-1.5 2,-0.4 25,-0.5 27,-0.1 0.916 94.3 133.9 70.5 44.3 -9.4 13.4 5.6 72 72 A R < - 0 0 88 -3,-0.7 2,-0.3 25,-0.2 -1,-0.2 -0.992 48.9-137.4-130.9 133.2 -10.0 10.5 3.3 73 73 A D - 0 0 72 -2,-0.4 -28,-1.5 22,-0.1 -27,-0.4 -0.689 24.0-174.3 -89.9 138.9 -9.6 6.8 4.1 74 74 A Y E -C 44 0B 38 -2,-0.3 20,-1.6 -30,-0.2 2,-0.5 -0.878 19.6-139.8-129.9 162.1 -8.0 4.5 1.5 75 75 A E E +CE 43 93B 58 -32,-3.0 -32,-2.6 -2,-0.3 2,-0.6 -0.920 19.4 179.4-128.3 106.7 -7.3 0.7 1.1 76 76 A V E -CE 42 92B 6 16,-1.1 16,-1.3 -2,-0.5 2,-0.6 -0.923 7.6-165.9-111.3 116.8 -4.0 -0.4 -0.2 77 77 A S E -CE 41 91B 32 -36,-1.6 -36,-1.6 -2,-0.6 2,-0.4 -0.890 5.2-160.2-105.3 121.9 -3.4 -4.2 -0.6 78 78 A V E -CE 40 90B 1 12,-2.2 12,-1.9 -2,-0.6 2,-0.4 -0.818 9.3-176.9-102.8 139.3 0.2 -5.4 -1.1 79 79 A Q E -C 39 0B 61 -40,-0.8 -40,-1.7 -2,-0.4 2,-1.1 -0.999 28.6-125.2-137.8 137.8 1.1 -8.8 -2.6 80 80 A S E -C 38 0B 1 -2,-0.4 7,-0.9 8,-0.3 2,-0.5 -0.687 31.4-166.6 -84.3 98.7 4.4 -10.5 -3.2 81 81 A L E +CF 37 86B 26 -44,-2.2 -44,-2.6 -2,-1.1 -45,-1.6 -0.742 22.8 161.6 -90.0 129.2 4.3 -11.5 -6.8 82 82 A R - 0 0 141 3,-0.8 -1,-0.2 -2,-0.5 4,-0.1 0.621 65.0 -76.1-115.6 -26.8 7.0 -13.9 -8.0 83 83 A G S S+ 0 0 49 2,-0.4 3,-0.1 -46,-0.1 -48,-0.0 -0.536 110.1 20.7 169.2 -95.2 5.5 -15.1 -11.3 84 84 A P S S+ 0 0 120 0, 0.0 2,-0.3 0, 0.0 -3,-0.0 0.942 128.8 16.4 -69.7 -50.1 2.6 -17.6 -11.6 85 85 A E S S- 0 0 151 -5,-0.0 -3,-0.8 0, 0.0 -2,-0.4 -0.936 70.3-155.4-127.9 150.3 1.2 -17.2 -8.1 86 86 A G B -F 81 0B 26 -2,-0.3 -5,-0.2 1,-0.2 -77,-0.1 -0.402 26.9 -85.3-111.4-170.6 1.7 -14.5 -5.4 87 87 A S - 0 0 8 -7,-0.9 -1,-0.2 1,-0.2 3,-0.1 -0.227 58.6 -67.4 -88.5-178.6 1.4 -14.3 -1.7 88 88 A E - 0 0 115 -79,-0.3 2,-0.6 1,-0.1 -8,-0.3 -0.183 59.2 -92.3 -66.1 162.2 -1.6 -13.6 0.5 89 89 A A + 0 0 81 -10,-0.1 2,-0.5 -3,-0.1 -10,-0.2 -0.686 48.2 173.6 -82.2 118.3 -3.4 -10.2 0.4 90 90 A R E +E 78 0B 94 -12,-1.9 -12,-2.2 -2,-0.6 2,-0.3 -0.918 7.8 158.3-130.6 106.7 -2.0 -7.9 3.1 91 91 A G E -E 77 0B 42 -2,-0.5 2,-0.3 -14,-0.3 -14,-0.2 -0.836 26.8-136.2-125.7 163.9 -3.2 -4.2 3.2 92 92 A I E -E 76 0B 51 -16,-1.3 2,-1.2 -2,-0.3 -16,-1.1 -0.781 28.4-103.9-117.2 161.8 -3.3 -1.4 5.7 93 93 A R E -E 75 0B 171 -2,-0.3 -18,-0.2 -18,-0.1 -20,-0.0 -0.707 41.5-149.4 -87.8 95.2 -6.0 1.1 6.6 94 94 A A + 0 0 5 -20,-1.6 2,-0.3 -2,-1.2 -20,-0.1 -0.042 20.9 174.5 -57.1 164.9 -4.8 4.4 5.1 95 95 A R - 0 0 145 -22,-0.2 -22,-0.1 -74,-0.1 -74,-0.1 -0.875 13.7-169.4-175.1 140.7 -5.6 7.7 6.7 96 96 A T - 0 0 8 -2,-0.3 -25,-0.5 -24,-0.2 -24,-0.1 -0.998 19.6-125.9-141.3 143.0 -4.8 11.4 6.3 97 97 A P - 0 0 62 0, 0.0 -26,-1.5 0, 0.0 2,-0.4 0.151 30.9-103.4 -69.8-168.2 -5.4 14.6 8.4 98 98 A T - 0 0 100 -28,-0.2 2,-0.1 -27,-0.1 -29,-0.0 -0.972 30.8-164.4-130.3 119.1 -7.2 17.8 7.3 99 99 A S + 0 0 78 -2,-0.4 0, 0.0 -77,-0.1 0, 0.0 -0.226 50.7 41.3 -89.4-177.9 -5.3 21.0 6.4 100 100 A G S S- 0 0 59 -2,-0.1 2,-0.2 2,-0.1 -2,-0.1 -0.340 106.5 -3.6 78.4-161.4 -6.6 24.5 6.1 101 101 A P - 0 0 138 0, 0.0 2,-0.7 0, 0.0 -2,-0.0 -0.466 63.8-146.8 -69.7 132.4 -9.2 26.1 8.4 102 102 A S - 0 0 107 -2,-0.2 2,-1.3 2,-0.0 -2,-0.1 -0.875 8.4-166.2-106.3 106.4 -10.6 23.8 11.1 103 103 A S 0 0 129 -2,-0.7 -1,-0.0 1,-0.2 0, 0.0 -0.657 360.0 360.0 -92.3 82.2 -14.3 24.6 11.9 104 104 A G 0 0 119 -2,-1.3 -1,-0.2 0, 0.0 -2,-0.0 0.750 360.0 360.0 63.0 360.0 -14.7 22.7 15.1