==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN TRANSPORT 14-APR-06 2DKR . COMPND 2 MOLECULE: LIN-7 HOMOLOG B; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.SUETAKE,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL . 93 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6181.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 53 57.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 23.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 8.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 116 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 70.5 -11.0 -6.9 -16.3 2 2 A S + 0 0 133 1,-0.0 2,-0.5 2,-0.0 4,-0.0 0.919 360.0 70.3 -42.5 -59.3 -8.1 -9.4 -16.8 3 3 A S S S+ 0 0 125 2,-0.0 2,-0.3 3,-0.0 -1,-0.0 -0.499 98.5 26.0 -67.3 115.8 -6.6 -7.3 -19.7 4 4 A G S S- 0 0 65 -2,-0.5 2,-0.5 3,-0.0 3,-0.1 -0.959 106.2 -21.7 135.5-153.7 -5.2 -4.1 -18.1 5 5 A S - 0 0 102 -2,-0.3 -2,-0.0 1,-0.1 3,-0.0 -0.844 46.5-135.5-101.5 130.5 -3.9 -3.0 -14.8 6 6 A S S S- 0 0 78 -2,-0.5 82,-0.3 1,-0.2 -1,-0.1 0.876 74.2 -66.1 -46.7 -43.6 -4.7 -4.9 -11.6 7 7 A G - 0 0 30 80,-0.1 79,-1.1 -3,-0.1 2,-0.4 0.251 51.2-157.2 148.0 78.1 -5.3 -1.6 -9.9 8 8 A V E -A 85 0A 74 77,-0.2 2,-0.8 1,-0.1 77,-0.3 -0.619 10.4-150.7 -77.9 124.0 -2.6 0.9 -9.2 9 9 A V E -A 84 0A 11 75,-3.0 75,-2.8 -2,-0.4 2,-0.8 -0.826 11.4-170.2 -99.8 102.5 -3.4 3.3 -6.4 10 10 A E E -A 83 0A 90 -2,-0.8 73,-0.2 73,-0.2 -2,-0.0 -0.815 9.4-177.3 -96.4 106.9 -1.6 6.6 -6.9 11 11 A L E -A 82 0A 0 -2,-0.8 71,-2.3 71,-0.7 2,-0.4 -0.781 33.7-101.5-105.4 148.2 -1.9 8.8 -3.8 12 12 A P E -A 81 0A 67 0, 0.0 2,-0.7 0, 0.0 69,-0.3 -0.523 35.2-126.4 -69.8 117.9 -0.6 12.4 -3.4 13 13 A K + 0 0 70 67,-1.2 2,-0.4 -2,-0.4 67,-0.1 -0.531 47.7 153.5 -68.9 109.7 2.7 12.4 -1.4 14 14 A T > - 0 0 61 -2,-0.7 3,-3.0 1,-0.1 65,-0.0 -0.985 55.7-123.0-144.5 130.2 2.1 14.8 1.5 15 15 A D T 3 S+ 0 0 166 -2,-0.4 3,-0.1 1,-0.3 -1,-0.1 0.817 106.0 78.5 -34.8 -42.2 3.7 15.0 4.9 16 16 A E T 3 S- 0 0 174 1,-0.1 -1,-0.3 -3,-0.1 2,-0.2 0.852 104.4-122.8 -36.8 -47.9 0.1 14.8 6.2 17 17 A G < - 0 0 22 -3,-3.0 25,-0.2 1,-0.1 -1,-0.1 -0.650 3.5 -96.9 126.1 176.5 0.3 11.0 5.5 18 18 A L - 0 0 24 -2,-0.2 25,-3.2 2,-0.2 26,-0.2 0.773 46.1-127.0-101.9 -37.9 -1.5 8.3 3.5 19 19 A G + 0 0 17 1,-0.3 19,-2.0 23,-0.2 2,-0.3 0.824 68.5 108.7 92.1 36.9 -3.7 6.9 6.2 20 20 A F E -D 37 0B 30 17,-0.2 2,-0.3 23,-0.1 -1,-0.3 -0.998 50.0-151.8-147.0 140.8 -2.8 3.2 5.9 21 21 A N E -D 36 0B 77 15,-2.7 14,-2.0 -2,-0.3 15,-0.6 -0.869 8.4-164.0-114.4 147.3 -0.8 0.8 8.0 22 22 A I E -D 34 0B 28 -2,-0.3 2,-0.3 12,-0.3 12,-0.2 -0.990 3.3-170.2-132.9 139.1 1.2 -2.3 6.9 23 23 A M E +D 33 0B 87 10,-1.0 10,-0.7 -2,-0.4 2,-0.4 -0.906 49.2 26.1-126.8 154.8 2.5 -5.3 8.9 24 24 A G - 0 0 18 -2,-0.3 44,-0.2 1,-0.1 8,-0.1 -0.787 43.8-169.8 102.3-143.4 4.8 -8.1 8.1 25 25 A G S S- 0 0 0 5,-0.7 43,-0.9 -2,-0.4 44,-0.2 0.775 76.3 -49.5 112.6 57.2 7.6 -8.1 5.5 26 26 A K S S+ 0 0 133 4,-0.9 41,-0.1 41,-0.2 -2,-0.1 0.860 115.6 105.8 53.3 38.0 9.0 -11.5 5.0 27 27 A E S S+ 0 0 143 3,-0.2 -1,-0.1 40,-0.0 40,-0.0 0.697 86.7 24.2-112.9 -36.5 9.3 -11.8 8.7 28 28 A Q S S- 0 0 115 2,-0.2 -2,-0.0 3,-0.0 -4,-0.0 0.117 114.6-100.3-116.5 17.8 6.5 -14.2 9.6 29 29 A N S S+ 0 0 149 1,-0.2 -5,-0.0 0, 0.0 0, 0.0 0.915 84.5 124.8 64.0 44.4 6.2 -15.9 6.2 30 30 A S - 0 0 41 0, 0.0 -4,-0.9 0, 0.0 -5,-0.7 -0.978 63.8-104.3-136.8 148.7 3.2 -13.8 5.3 31 31 A P - 0 0 64 0, 0.0 2,-0.3 0, 0.0 33,-0.1 -0.350 41.8-103.0 -69.8 148.6 2.4 -11.4 2.3 32 32 A I + 0 0 8 23,-0.3 23,-2.1 32,-0.1 2,-0.3 -0.570 57.1 146.1 -75.9 130.3 2.4 -7.7 2.8 33 33 A Y E -DE 23 54B 58 -10,-0.7 -10,-1.0 -2,-0.3 2,-0.7 -0.914 54.7 -69.6-152.5 176.7 -1.0 -6.1 3.2 34 34 A I E -D 22 0B 6 19,-1.2 18,-1.0 16,-0.4 -12,-0.3 -0.663 37.9-176.3 -79.9 112.8 -3.0 -3.3 4.8 35 35 A S E S+ 0 0 33 -14,-2.0 2,-0.3 -2,-0.7 -1,-0.2 0.943 70.1 0.2 -72.8 -49.9 -3.2 -4.0 8.6 36 36 A R E -D 21 0B 149 -15,-0.6 -15,-2.7 14,-0.1 2,-0.4 -0.995 63.6-151.2-143.5 147.6 -5.4 -1.0 9.4 37 37 A V E -D 20 0B 23 -2,-0.3 -17,-0.2 -17,-0.2 -18,-0.1 -0.952 23.2-117.8-122.8 140.2 -7.0 1.9 7.6 38 38 A I > - 0 0 64 -19,-2.0 3,-1.3 -2,-0.4 6,-0.4 -0.608 12.2-146.4 -78.1 125.2 -7.8 5.4 8.8 39 39 A P T 3 S+ 0 0 101 0, 0.0 -1,-0.1 0, 0.0 -20,-0.0 0.417 101.2 30.4 -69.7 3.9 -11.6 6.1 8.6 40 40 A G T 3 S+ 0 0 55 -21,-0.1 2,-0.2 0, 0.0 -21,-0.0 0.005 97.4 108.6-153.6 35.9 -10.6 9.7 7.9 41 41 A G S <> S- 0 0 12 -3,-1.3 4,-2.7 -22,-0.2 5,-0.2 -0.580 82.6 -91.4-111.6 175.8 -7.3 9.6 6.0 42 42 A V H > S+ 0 0 36 2,-0.2 4,-3.1 1,-0.2 -23,-0.2 0.927 124.8 49.5 -49.3 -52.6 -6.1 10.3 2.5 43 43 A A H > S+ 0 0 0 -25,-3.2 4,-3.0 2,-0.2 6,-0.2 0.966 110.6 47.7 -51.8 -62.5 -6.6 6.7 1.5 44 44 A D H 4 S+ 0 0 83 -6,-0.4 -1,-0.2 -25,-0.3 -2,-0.2 0.882 114.9 48.2 -46.9 -44.6 -10.1 6.4 3.0 45 45 A R H < S+ 0 0 198 -4,-2.7 -1,-0.3 1,-0.2 -2,-0.2 0.915 112.8 47.9 -64.3 -44.4 -11.0 9.6 1.2 46 46 A H H < S- 0 0 100 -4,-3.1 -2,-0.2 -5,-0.2 -1,-0.2 0.968 101.8-138.2 -61.3 -56.0 -9.4 8.4 -2.1 47 47 A G < + 0 0 51 -4,-3.0 -3,-0.1 -5,-0.2 3,-0.1 0.879 68.9 86.1 92.8 82.1 -11.1 5.0 -2.1 48 48 A G + 0 0 26 1,-0.4 2,-0.5 -5,-0.2 -4,-0.1 0.245 66.9 73.8-171.4 -38.6 -8.8 2.2 -3.2 49 49 A L + 0 0 7 -6,-0.2 -1,-0.4 3,-0.0 2,-0.3 -0.836 54.7 164.4 -99.8 128.7 -6.8 0.8 -0.3 50 50 A K > - 0 0 140 -2,-0.5 3,-2.3 -3,-0.1 -16,-0.4 -0.964 49.4 -74.5-140.7 156.7 -8.6 -1.3 2.4 51 51 A R T 3 S+ 0 0 179 -2,-0.3 -16,-0.2 1,-0.3 3,-0.1 -0.292 120.6 28.5 -52.7 114.1 -7.6 -3.7 5.1 52 52 A G T 3 S+ 0 0 45 -18,-1.0 -1,-0.3 1,-0.4 -17,-0.1 -0.100 78.7 133.5 125.2 -35.7 -6.5 -6.9 3.4 53 53 A D < - 0 0 25 -3,-2.3 -19,-1.2 -20,-0.1 2,-0.4 -0.275 54.5-132.8 -52.1 119.4 -5.3 -5.5 0.1 54 54 A Q B -E 33 0B 47 33,-0.5 33,-0.7 -21,-0.2 2,-0.7 -0.652 14.9-124.2 -81.4 126.7 -1.9 -7.2 -0.6 55 55 A L E +B 86 0A 12 -23,-2.1 -23,-0.3 -2,-0.4 31,-0.2 -0.591 31.0 177.1 -73.8 110.1 0.9 -4.8 -1.6 56 56 A L E - 0 0 41 29,-2.0 8,-1.6 -2,-0.7 7,-1.3 0.938 63.6 -25.6 -78.0 -50.8 2.2 -6.0 -5.0 57 57 A S E -BC 85 62A 28 28,-0.7 28,-2.8 5,-0.2 2,-0.4 -0.977 53.7-143.9-163.8 152.0 4.7 -3.3 -5.6 58 58 A V E > S-BC 84 61A 1 3,-2.1 3,-1.1 -2,-0.3 26,-0.2 -0.971 80.4 -3.4-126.2 138.9 5.4 0.4 -4.7 59 59 A N T 3 S- 0 0 49 24,-2.5 -1,-0.2 -2,-0.4 25,-0.1 0.853 131.8 -55.4 52.3 37.1 6.9 3.1 -6.9 60 60 A G T 3 S+ 0 0 77 23,-0.4 2,-0.4 1,-0.2 -1,-0.3 0.824 113.1 124.6 66.9 31.3 7.4 0.5 -9.6 61 61 A V E < -C 58 0A 44 -3,-1.1 -3,-2.1 10,-0.0 2,-0.4 -0.984 66.6-119.3-129.1 124.8 9.4 -1.7 -7.2 62 62 A S E +C 57 0A 88 -2,-0.4 -5,-0.2 -5,-0.2 -6,-0.1 -0.435 40.4 161.8 -62.7 116.4 8.6 -5.3 -6.4 63 63 A V > + 0 0 1 -7,-1.3 3,-1.8 -2,-0.4 -6,-0.2 0.726 56.5 82.9-105.7 -33.8 7.9 -5.5 -2.7 64 64 A E T 3 S+ 0 0 68 -8,-1.6 2,-0.3 1,-0.3 -32,-0.1 0.838 100.3 43.0 -38.9 -42.1 6.1 -8.8 -2.5 65 65 A G T 3 S+ 0 0 44 -9,-0.2 -1,-0.3 -34,-0.1 2,-0.3 -0.358 108.4 74.4-104.9 52.8 9.5 -10.4 -2.4 66 66 A E S < S- 0 0 89 -3,-1.8 2,-0.1 -2,-0.3 -3,-0.1 -0.967 81.9 -90.6-154.1 166.4 11.2 -8.1 -0.0 67 67 A Q >> - 0 0 71 -2,-0.3 4,-1.1 1,-0.1 3,-0.9 -0.459 42.0-107.0 -81.5 154.7 11.4 -7.1 3.7 68 68 A H H 3> S+ 0 0 54 -43,-0.9 4,-1.7 1,-0.3 3,-0.5 0.913 116.8 65.1 -43.2 -55.8 9.2 -4.5 5.2 69 69 A E H 3> S+ 0 0 131 1,-0.3 4,-2.4 2,-0.2 -1,-0.3 0.861 97.8 55.8 -34.4 -54.8 12.2 -2.1 5.4 70 70 A K H <> S+ 0 0 70 -3,-0.9 4,-2.6 1,-0.2 -1,-0.3 0.936 103.9 52.2 -45.6 -60.1 12.2 -2.0 1.6 71 71 A A H X S+ 0 0 2 -4,-1.1 4,-2.3 -3,-0.5 -1,-0.2 0.905 109.5 50.0 -43.4 -53.4 8.6 -0.9 1.4 72 72 A V H X S+ 0 0 51 -4,-1.7 4,-1.8 1,-0.2 -1,-0.3 0.916 109.6 51.3 -53.8 -47.4 9.2 1.9 3.8 73 73 A E H X S+ 0 0 93 -4,-2.4 4,-2.9 -5,-0.2 -1,-0.2 0.927 108.5 51.6 -56.8 -48.2 12.3 3.1 1.8 74 74 A L H X S+ 0 0 15 -4,-2.6 4,-2.0 1,-0.2 -2,-0.2 0.955 105.4 54.1 -54.0 -56.0 10.3 3.1 -1.5 75 75 A L H < S+ 0 0 29 -4,-2.3 -1,-0.2 1,-0.3 -2,-0.2 0.891 114.3 42.3 -45.7 -47.3 7.5 5.2 -0.0 76 76 A K H < S+ 0 0 126 -4,-1.8 -1,-0.3 1,-0.2 -2,-0.2 0.889 105.3 64.1 -68.7 -40.3 10.1 7.8 1.0 77 77 A A H < S+ 0 0 76 -4,-2.9 -1,-0.2 -5,-0.2 -2,-0.2 0.873 89.6 86.5 -50.7 -41.1 12.0 7.4 -2.3 78 78 A A < - 0 0 9 -4,-2.0 2,-0.3 -3,-0.1 4,-0.2 0.046 66.3-155.3 -54.3 170.4 8.9 8.8 -4.1 79 79 A Q - 0 0 181 2,-0.7 2,-0.6 -65,-0.0 -2,-0.1 -0.846 65.6 -13.8-158.0 115.7 8.4 12.5 -4.5 80 80 A G S S+ 0 0 55 -2,-0.3 -67,-1.2 -67,-0.1 2,-0.3 -0.150 133.3 25.7 87.0 -41.5 5.1 14.5 -5.0 81 81 A S E -A 12 0A 50 -2,-0.6 -2,-0.7 -69,-0.3 2,-0.2 -0.960 68.2-155.0-157.6 135.9 3.2 11.3 -5.7 82 82 A V E -A 11 0A 0 -71,-2.3 -71,-0.7 -2,-0.3 2,-0.5 -0.702 11.6-137.5-110.0 163.0 3.6 7.6 -4.9 83 83 A K E -A 10 0A 97 -2,-0.2 -24,-2.5 -73,-0.2 2,-0.6 -0.939 18.0-178.2-125.9 110.1 2.3 4.5 -6.7 84 84 A L E -AB 9 58A 2 -75,-2.8 -75,-3.0 -2,-0.5 2,-0.3 -0.905 11.3-158.9-111.7 108.2 0.9 1.6 -4.6 85 85 A V E +AB 8 57A 39 -28,-2.8 -29,-2.0 -2,-0.6 -28,-0.7 -0.660 15.5 176.8 -87.1 138.4 -0.2 -1.4 -6.6 86 86 A V E - B 0 55A 6 -79,-1.1 2,-0.6 -2,-0.3 -31,-0.2 -0.890 28.2-123.8-136.2 166.4 -2.7 -3.9 -5.1 87 87 A R + 0 0 161 -33,-0.7 -33,-0.5 -2,-0.3 -80,-0.1 -0.937 24.4 170.7-118.3 111.5 -4.6 -7.0 -6.0 88 88 A S + 0 0 94 -2,-0.6 -1,-0.1 -82,-0.3 -35,-0.0 0.164 38.5 130.2-101.3 16.2 -8.4 -7.0 -5.8 89 89 A G - 0 0 41 1,-0.1 2,-0.2 2,-0.1 -2,-0.1 -0.478 65.4-107.6 -74.9 140.5 -8.7 -10.3 -7.6 90 90 A P - 0 0 88 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.482 21.1-126.7 -69.7 129.5 -10.9 -13.0 -6.0 91 91 A S S S+ 0 0 136 -2,-0.2 -2,-0.1 2,-0.2 0, 0.0 0.873 113.5 35.7 -39.8 -49.6 -9.0 -15.9 -4.4 92 92 A S 0 0 121 1,-0.2 -1,-0.2 -3,-0.0 -3,-0.0 0.950 360.0 360.0 -72.3 -51.5 -11.1 -18.3 -6.5 93 93 A G 0 0 85 0, 0.0 -2,-0.2 0, 0.0 -1,-0.2 0.676 360.0 360.0 -85.0 360.0 -11.4 -16.1 -9.6