==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION 17-APR-06 2DL6 . COMPND 2 MOLECULE: CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 8; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.SUETAKE,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL . 83 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7500.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 39 47.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 7 8.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 6.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 10.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 14 16.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 131 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 166.2 12.4 14.9 -20.9 2 2 A S + 0 0 85 2,-0.1 2,-0.3 4,-0.0 4,-0.1 -0.979 360.0 174.0-124.9 126.5 10.7 13.8 -24.1 3 3 A S - 0 0 109 -2,-0.4 2,-0.8 2,-0.1 0, 0.0 -0.873 55.5 -6.4-127.6 160.4 8.2 15.8 -26.1 4 4 A G S S- 0 0 71 -2,-0.3 2,-0.4 1,-0.0 -2,-0.1 -0.427 121.6 -19.0 62.0-103.4 6.4 15.4 -29.4 5 5 A S + 0 0 44 -2,-0.8 2,-0.4 2,-0.0 -2,-0.1 -0.984 59.6 178.2-143.7 129.1 8.1 12.4 -30.9 6 6 A S - 0 0 59 -2,-0.4 2,-1.4 59,-0.2 62,-0.0 -0.966 21.9-144.8-135.2 118.3 11.4 10.7 -30.2 7 7 A G + 0 0 61 -2,-0.4 59,-0.1 63,-0.1 62,-0.1 -0.634 51.6 126.6 -83.9 89.8 12.8 7.6 -31.9 8 8 A E - 0 0 127 -2,-1.4 2,-1.3 2,-0.0 -2,-0.1 -0.997 68.7-100.4-146.3 147.7 14.6 5.9 -29.1 9 9 A P + 0 0 117 0, 0.0 2,-0.2 0, 0.0 -2,-0.1 -0.511 61.4 153.3 -69.8 92.8 14.6 2.4 -27.5 10 10 A N - 0 0 95 -2,-1.3 2,-0.2 3,-0.0 3,-0.0 -0.747 32.9-134.7-119.5 167.7 12.6 2.9 -24.4 11 11 A H - 0 0 156 -2,-0.2 2,-0.2 1,-0.1 -1,-0.0 -0.594 47.6 -56.9-114.7 177.5 10.4 0.7 -22.2 12 12 A L - 0 0 115 -2,-0.2 2,-0.5 1,-0.1 -1,-0.1 -0.357 55.3-176.5 -58.1 121.5 7.0 1.1 -20.6 13 13 A D + 0 0 121 -2,-0.2 2,-0.2 -3,-0.0 -1,-0.1 -0.924 17.3 140.8-128.8 107.3 7.0 4.2 -18.4 14 14 A V - 0 0 45 -2,-0.5 2,-0.4 4,-0.1 3,-0.0 -0.790 46.8-101.8-135.0 177.6 3.9 5.0 -16.3 15 15 A D > - 0 0 91 -2,-0.2 3,-1.8 1,-0.1 24,-0.3 -0.879 26.2-123.4-108.9 137.2 2.9 6.4 -12.9 16 16 A L T 3 S+ 0 0 107 -2,-0.4 24,-0.8 1,-0.3 23,-0.4 0.857 115.2 57.6 -40.3 -45.1 1.7 4.2 -10.0 17 17 A E T 3 S+ 0 0 139 21,-0.1 -1,-0.3 22,-0.1 22,-0.0 0.881 86.6 97.7 -55.7 -40.4 -1.5 6.3 -9.9 18 18 A T S < S- 0 0 41 -3,-1.8 21,-2.0 20,-0.1 22,-0.3 -0.211 72.4-136.5 -52.6 136.2 -2.1 5.4 -13.6 19 19 A R B -A 38 0A 79 19,-0.2 19,-0.2 20,-0.1 -1,-0.1 -0.545 4.8-133.8 -95.2 162.4 -4.6 2.5 -13.9 20 20 A I - 0 0 9 17,-1.5 2,-0.1 -2,-0.2 11,-0.0 -0.958 15.9-135.8-123.2 117.0 -4.3 -0.5 -16.2 21 21 A P - 0 0 7 0, 0.0 34,-1.5 0, 0.0 2,-0.3 -0.420 25.8-179.4 -69.7 139.6 -7.3 -1.7 -18.3 22 22 A V E -BC 31 54B 0 9,-0.7 9,-2.0 32,-0.3 2,-0.7 -0.995 21.3-144.2-145.3 136.0 -8.1 -5.4 -18.4 23 23 A I E -B 30 0B 60 30,-3.1 7,-0.2 -2,-0.3 0, 0.0 -0.882 25.6-128.2-104.3 113.9 -10.7 -7.5 -20.2 24 24 A N - 0 0 15 5,-2.9 28,-0.2 -2,-0.7 27,-0.1 -0.150 11.9-159.2 -55.2 150.5 -12.0 -10.5 -18.3 25 25 A K S S+ 0 0 160 26,-1.3 -1,-0.1 3,-0.1 27,-0.1 0.710 85.5 55.6-103.3 -30.0 -11.9 -13.8 -20.1 26 26 A V S S+ 0 0 117 25,-0.6 26,-0.1 3,-0.1 -2,-0.0 0.979 133.9 2.8 -67.2 -58.3 -14.5 -15.7 -18.0 27 27 A D S S- 0 0 123 2,-0.1 -2,-0.1 0, 0.0 -1,-0.1 0.843 97.1-121.1 -96.3 -45.5 -17.4 -13.2 -18.3 28 28 A G + 0 0 44 1,-0.2 2,-0.4 0, 0.0 -3,-0.1 0.758 50.6 157.7 105.7 35.9 -15.9 -10.7 -20.7 29 29 A T - 0 0 63 2,-0.0 -5,-2.9 1,-0.0 2,-0.4 -0.786 33.0-139.2 -96.6 133.9 -16.1 -7.5 -18.6 30 30 A L E -B 23 0B 81 -2,-0.4 2,-0.5 -7,-0.2 -7,-0.2 -0.764 10.9-148.5 -94.0 133.7 -13.8 -4.5 -19.4 31 31 A L E +B 22 0B 22 -9,-2.0 -9,-0.7 -2,-0.4 2,-0.3 -0.885 24.5 164.6-105.3 126.1 -12.2 -2.6 -16.6 32 32 A V > - 0 0 58 -2,-0.5 3,-1.6 -11,-0.2 2,-0.2 -0.983 50.6 -15.9-139.7 150.1 -11.5 1.1 -17.1 33 33 A G G > S- 0 0 45 -2,-0.3 3,-0.7 1,-0.3 -13,-0.1 -0.402 134.4 -2.1 62.7-126.5 -10.7 4.1 -14.8 34 34 A E G 3 S+ 0 0 145 1,-0.2 -1,-0.3 -2,-0.2 -3,-0.0 0.834 129.9 66.5 -65.9 -33.0 -11.5 3.3 -11.2 35 35 A D G < S+ 0 0 98 -3,-1.6 -1,-0.2 -5,-0.1 -2,-0.2 0.823 94.3 72.8 -57.5 -32.0 -12.8 -0.1 -12.2 36 36 A A S < S- 0 0 2 -3,-0.7 -4,-0.1 1,-0.1 -6,-0.0 -0.572 89.0-113.6 -87.2 149.2 -9.2 -1.0 -13.2 37 37 A P - 0 0 13 0, 0.0 -17,-1.5 0, 0.0 2,-0.4 -0.010 37.1 -89.0 -69.8 179.6 -6.5 -1.7 -10.6 38 38 A R B -A 19 0A 115 -19,-0.2 4,-0.5 1,-0.1 -19,-0.2 -0.815 23.9-130.7 -98.8 132.1 -3.4 0.4 -10.0 39 39 A R S > S+ 0 0 95 -21,-2.0 3,-1.2 -2,-0.4 4,-0.4 0.879 109.7 53.0 -42.9 -47.3 -0.2 -0.3 -12.0 40 40 A A T > S+ 0 0 32 -24,-0.8 3,-0.9 -22,-0.3 4,-0.3 0.967 116.9 34.8 -54.5 -59.9 1.7 -0.3 -8.7 41 41 A E T 3> S+ 0 0 36 1,-0.2 4,-1.4 -25,-0.2 -1,-0.3 0.251 91.7 103.7 -80.5 14.1 -0.5 -2.9 -7.0 42 42 A L H <> S+ 0 0 24 -3,-1.2 4,-2.5 -4,-0.5 -1,-0.2 0.836 78.1 51.7 -64.3 -33.2 -0.9 -4.6 -10.4 43 43 A E H <4 S+ 0 0 137 -3,-0.9 4,-0.3 -4,-0.4 -1,-0.2 0.973 112.0 42.1 -67.9 -56.4 1.5 -7.3 -9.3 44 44 A M H > S+ 0 0 119 -4,-0.3 4,-0.7 1,-0.2 -1,-0.2 0.734 118.6 50.3 -63.2 -21.8 -0.2 -8.2 -6.0 45 45 A W H X S+ 0 0 36 -4,-1.4 4,-2.4 1,-0.2 3,-0.4 0.874 103.8 54.5 -83.4 -41.5 -3.5 -7.9 -8.0 46 46 A L H < S+ 0 0 71 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.445 100.0 69.5 -72.2 2.0 -2.5 -10.1 -10.9 47 47 A Q H 4 S+ 0 0 162 -4,-0.3 -1,-0.2 -3,-0.1 -2,-0.2 0.919 120.6 7.2 -84.6 -50.9 -1.7 -12.7 -8.2 48 48 A G H < S+ 0 0 52 -4,-0.7 -2,-0.2 -3,-0.4 3,-0.1 0.520 135.5 50.0-108.5 -10.1 -5.2 -13.6 -7.1 49 49 A H >< + 0 0 95 -4,-2.4 3,-1.1 -5,-0.1 -3,-0.1 -0.080 65.8 125.6-118.1 31.4 -7.1 -11.6 -9.6 50 50 A P T 3 + 0 0 67 0, 0.0 -1,-0.1 0, 0.0 -4,-0.1 0.432 43.6 100.7 -69.7 2.6 -5.3 -12.9 -12.7 51 51 A E T 3 S+ 0 0 122 -3,-0.1 -26,-1.3 -27,-0.1 -25,-0.6 0.613 76.5 68.4 -64.1 -10.3 -8.7 -13.9 -14.1 52 52 A F S < S- 0 0 48 -3,-1.1 2,-0.3 -28,-0.2 -28,-0.2 -0.452 73.0-143.6-102.7 177.6 -8.4 -10.7 -16.2 53 53 A A - 0 0 28 -2,-0.1 -30,-3.1 0, 0.0 2,-0.1 -0.967 27.1-105.0-148.7 128.3 -6.2 -9.8 -19.1 54 54 A V B -C 22 0B 53 -2,-0.3 -32,-0.3 -32,-0.3 5,-0.0 -0.293 46.3-114.5 -53.2 118.4 -4.5 -6.5 -20.0 55 55 A D >> - 0 0 17 -34,-1.5 4,-1.1 -24,-0.2 3,-0.7 -0.240 12.2-136.6 -57.3 140.7 -6.5 -5.1 -22.9 56 56 A P H 3> S+ 0 0 88 0, 0.0 4,-2.3 0, 0.0 5,-0.3 0.785 98.5 72.8 -69.7 -28.4 -4.5 -4.8 -26.2 57 57 A R H 3> S+ 0 0 152 1,-0.2 4,-1.5 2,-0.2 -2,-0.1 0.841 99.0 48.2 -55.5 -34.7 -5.9 -1.4 -26.9 58 58 A F H <> S+ 0 0 30 -3,-0.7 4,-1.6 2,-0.2 -1,-0.2 0.966 111.0 47.5 -71.0 -55.0 -3.7 -0.0 -24.1 59 59 A L H X S+ 0 0 90 -4,-1.1 4,-1.7 1,-0.2 3,-0.4 0.960 111.6 50.0 -50.3 -61.8 -0.5 -1.8 -25.3 60 60 A A H X S+ 0 0 62 -4,-2.3 4,-2.2 1,-0.2 -1,-0.2 0.918 103.3 60.8 -42.6 -58.8 -0.8 -0.7 -28.9 61 61 A Y H X S+ 0 0 146 -4,-1.5 4,-1.2 -5,-0.3 -1,-0.2 0.879 106.1 47.1 -35.5 -59.7 -1.4 2.9 -27.9 62 62 A M H >X S+ 0 0 17 -4,-1.6 3,-1.6 -3,-0.4 4,-0.7 0.961 107.2 55.0 -49.1 -64.7 2.0 3.1 -26.3 63 63 A E H >X S+ 0 0 106 -4,-1.7 4,-2.1 1,-0.3 3,-1.9 0.869 99.0 63.6 -35.6 -55.4 3.9 1.5 -29.2 64 64 A D H 3X S+ 0 0 84 -4,-2.2 4,-2.0 1,-0.3 -1,-0.3 0.874 89.3 68.3 -37.8 -52.4 2.4 4.1 -31.5 65 65 A R H << S+ 0 0 127 -3,-1.6 -1,-0.3 -4,-1.2 -59,-0.2 0.856 111.4 32.6 -36.1 -50.1 4.3 6.8 -29.6 66 66 A R H << S+ 0 0 59 -3,-1.9 -1,-0.2 -4,-0.7 -2,-0.2 0.919 106.7 70.9 -76.3 -46.4 7.5 5.3 -30.9 67 67 A K H < S+ 0 0 150 -4,-2.1 -2,-0.2 -60,-0.0 -1,-0.2 0.867 91.4 69.6 -34.7 -57.1 6.1 4.2 -34.3 68 68 A Q < + 0 0 120 -4,-2.0 2,-0.3 -62,-0.0 -62,-0.1 -0.248 67.0 165.0 -65.2 154.5 5.9 7.8 -35.3 69 69 A K - 0 0 134 -64,-0.1 2,-0.3 -62,-0.1 -63,-0.1 -0.958 23.5-135.4-160.1 173.8 9.1 9.8 -36.0 70 70 A W - 0 0 179 -2,-0.3 2,-0.3 -65,-0.1 -63,-0.1 -0.892 13.1-172.2-136.5 166.2 10.5 12.9 -37.6 71 71 A Q - 0 0 154 -2,-0.3 2,-0.2 0, 0.0 -2,-0.0 -0.990 8.9-146.9-157.6 155.5 13.4 13.9 -39.8 72 72 A R - 0 0 182 -2,-0.3 2,-0.1 1,-0.1 -2,-0.0 -0.629 29.2 -91.5-118.6 177.9 15.2 17.0 -41.2 73 73 A C - 0 0 113 -2,-0.2 -1,-0.1 1,-0.1 2,-0.1 -0.264 43.4 -99.6 -84.0 174.4 17.0 18.0 -44.4 74 74 A K - 0 0 199 1,-0.2 -1,-0.1 -2,-0.1 2,-0.1 -0.296 39.1 -96.2 -88.0 175.9 20.7 17.7 -45.1 75 75 A K - 0 0 184 -2,-0.1 2,-0.3 1,-0.0 -1,-0.2 -0.233 33.5-143.8 -85.0 178.0 23.4 20.5 -44.9 76 76 A N - 0 0 144 -2,-0.1 2,-0.2 0, 0.0 -1,-0.0 -0.943 9.1-118.6-142.0 162.3 24.8 22.6 -47.7 77 77 A N - 0 0 136 -2,-0.3 2,-0.1 1,-0.1 0, 0.0 -0.487 32.7-101.7 -97.7 170.1 28.1 24.1 -48.9 78 78 A S + 0 0 126 -2,-0.2 -1,-0.1 1,-0.1 3,-0.1 -0.261 62.9 112.6 -84.0 174.5 29.0 27.8 -49.4 79 79 A G + 0 0 66 1,-0.7 -1,-0.1 -2,-0.1 0, 0.0 -0.316 55.3 73.7 161.9 -68.9 29.2 29.6 -52.7 80 80 A P S S- 0 0 120 0, 0.0 -1,-0.7 0, 0.0 2,-0.3 -0.138 74.7-114.1 -69.7 169.1 26.6 32.3 -53.3 81 81 A S - 0 0 111 1,-0.1 0, 0.0 -3,-0.1 0, 0.0 -0.802 14.8-123.0-109.1 150.3 26.5 35.7 -51.6 82 82 A S 0 0 138 -2,-0.3 -1,-0.1 1,-0.3 0, 0.0 0.930 360.0 360.0 -53.4 -50.4 24.0 37.1 -49.2 83 83 A G 0 0 119 -3,-0.0 -1,-0.3 0, 0.0 -2,-0.0 0.431 360.0 360.0 -35.0 360.0 23.3 40.1 -51.4