==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 20-APR-06 2DLK . COMPND 2 MOLECULE: NOVEL PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR H.P.ZHANG,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL . 79 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7575.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 34 43.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 6 7.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 6.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 20 25.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 123 0, 0.0 3,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 43.4 -16.4 -6.7 -19.3 2 2 A S + 0 0 131 1,-0.1 2,-0.3 2,-0.0 0, 0.0 0.924 360.0 6.7 -55.7 -48.0 -19.0 -8.3 -21.6 3 3 A S S S- 0 0 99 1,-0.0 -1,-0.1 0, 0.0 2,-0.1 -0.896 80.5-108.4-134.5 163.7 -21.7 -7.7 -19.1 4 4 A G - 0 0 75 -2,-0.3 2,-0.3 1,-0.1 -1,-0.0 -0.281 29.1-122.2 -86.2 175.1 -22.2 -5.9 -15.8 5 5 A S - 0 0 118 2,-0.2 -1,-0.1 1,-0.1 2,-0.0 -0.764 30.1 -89.9-117.0 163.4 -22.7 -7.4 -12.3 6 6 A S S S+ 0 0 111 -2,-0.3 -1,-0.1 2,-0.1 14,-0.0 -0.281 89.7 8.6 -68.5 155.5 -25.4 -7.0 -9.7 7 7 A G S S- 0 0 28 1,-0.1 13,-0.2 11,-0.1 -2,-0.2 0.313 89.3 -89.3 56.2 164.2 -25.1 -4.3 -7.0 8 8 A M E -A 19 0A 75 11,-1.4 11,-2.0 13,-0.1 -1,-0.1 -0.927 37.4-143.4-116.2 111.6 -22.5 -1.5 -7.1 9 9 A P E -A 18 0A 82 0, 0.0 9,-0.3 0, 0.0 -2,-0.0 -0.324 24.5-105.7 -69.8 151.5 -19.2 -2.2 -5.4 10 10 A C - 0 0 15 7,-2.8 6,-0.1 2,-0.1 15,-0.0 -0.218 19.0-124.2 -72.6 166.6 -17.4 0.6 -3.5 11 11 A D S S+ 0 0 122 5,-0.0 -1,-0.1 4,-0.0 0, 0.0 0.928 85.8 87.1 -77.5 -48.7 -14.3 2.3 -4.8 12 12 A F S > S- 0 0 45 1,-0.1 4,-1.2 2,-0.1 5,-0.3 -0.229 71.3-144.3 -55.1 137.3 -12.0 1.6 -1.9 13 13 A P T 4 S+ 0 0 115 0, 0.0 -1,-0.1 0, 0.0 -3,-0.1 0.946 97.9 41.7 -69.8 -51.0 -10.2 -1.8 -2.1 14 14 A G T 4 S+ 0 0 72 1,-0.2 -2,-0.1 2,-0.1 0, 0.0 0.900 106.1 65.5 -64.8 -41.9 -10.3 -2.7 1.6 15 15 A C T 4 S- 0 0 40 1,-0.1 -1,-0.2 2,-0.0 -4,-0.0 0.942 71.2-176.8 -43.7 -67.5 -13.9 -1.4 2.0 16 16 A G < + 0 0 52 -4,-1.2 2,-0.3 1,-0.2 -1,-0.1 0.928 22.3 156.2 65.7 46.3 -15.4 -4.1 -0.2 17 17 A R - 0 0 119 -5,-0.3 -7,-2.8 2,-0.0 2,-0.4 -0.732 26.7-159.1-105.1 154.5 -18.9 -2.7 0.1 18 18 A I E -A 9 0A 93 -2,-0.3 2,-0.4 -9,-0.3 -11,-0.1 -0.997 9.0-179.8-136.3 137.6 -21.8 -3.2 -2.3 19 19 A F E -A 8 0A 33 -11,-2.0 -11,-1.4 -2,-0.4 6,-0.1 -0.982 21.9-149.9-140.8 126.0 -25.0 -1.2 -2.8 20 20 A S S S+ 0 0 97 -2,-0.4 2,-0.2 -13,-0.2 -1,-0.2 0.977 87.2 50.9 -54.3 -64.2 -27.8 -1.8 -5.3 21 21 A N S > S- 0 0 84 1,-0.1 4,-1.2 -14,-0.0 3,-0.1 -0.538 77.5-140.3 -79.3 142.4 -28.9 1.9 -5.7 22 22 A R H > S+ 0 0 188 -2,-0.2 4,-2.0 1,-0.2 3,-0.3 0.927 97.9 66.8 -66.4 -46.5 -26.2 4.4 -6.5 23 23 A Q H > S+ 0 0 136 1,-0.3 4,-2.0 2,-0.2 -1,-0.2 0.874 101.6 49.7 -40.6 -48.7 -27.7 7.1 -4.2 24 24 A Y H > S+ 0 0 154 2,-0.2 4,-2.8 1,-0.2 -1,-0.3 0.928 108.1 53.5 -58.9 -47.5 -26.8 4.9 -1.3 25 25 A L H X S+ 0 0 14 -4,-1.2 4,-2.6 -3,-0.3 3,-0.3 0.966 108.3 47.3 -51.7 -62.4 -23.2 4.4 -2.5 26 26 A N H X S+ 0 0 95 -4,-2.0 4,-2.4 1,-0.3 -1,-0.2 0.878 114.1 49.6 -47.6 -43.3 -22.5 8.1 -2.8 27 27 A H H X S+ 0 0 80 -4,-2.0 4,-1.5 -5,-0.3 -1,-0.3 0.891 108.9 52.1 -64.8 -40.6 -24.0 8.6 0.7 28 28 A H H X>S+ 0 0 21 -4,-2.8 4,-2.6 -3,-0.3 5,-1.1 0.927 113.1 43.4 -61.9 -46.7 -21.9 5.7 2.1 29 29 A K H <5S+ 0 0 61 -4,-2.6 -2,-0.2 1,-0.2 -1,-0.2 0.878 115.3 48.9 -66.9 -38.6 -18.6 7.2 0.7 30 30 A K H <5S+ 0 0 112 -4,-2.4 -1,-0.2 -5,-0.3 -2,-0.2 0.719 124.4 32.5 -73.2 -21.3 -19.6 10.7 1.8 31 31 A Y H ><5S+ 0 0 127 -4,-1.5 3,-0.6 -5,-0.2 4,-0.2 0.880 132.4 24.2 -97.3 -68.0 -20.5 9.3 5.3 32 32 A Q G ><5S+ 0 0 135 -4,-2.6 3,-0.5 1,-0.2 -3,-0.2 0.970 136.7 33.8 -64.2 -56.0 -18.1 6.4 6.0 33 33 A H G 3 - 0 0 89 1,-0.1 4,-2.2 5,-0.1 5,-0.3 -0.868 63.4-156.8-106.3 133.2 3.9 -3.2 -3.0 44 44 A P T 4 S+ 0 0 116 0, 0.0 -1,-0.1 0, 0.0 -3,-0.1 0.940 96.6 46.0 -69.8 -49.8 2.9 -5.7 -0.2 45 45 A A T 4 S+ 0 0 92 1,-0.2 -2,-0.0 2,-0.1 0, 0.0 0.837 114.9 50.3 -63.0 -33.4 6.2 -5.7 1.6 46 46 A C T 4 S+ 0 0 36 2,-0.1 -1,-0.2 1,-0.1 3,-0.1 0.957 71.1 175.0 -70.1 -52.7 6.3 -1.9 1.5 47 47 A G < + 0 0 63 -4,-2.2 2,-0.2 -6,-0.2 -1,-0.1 0.829 26.3 156.5 47.2 35.9 2.8 -1.3 2.8 48 48 A K - 0 0 105 -5,-0.3 -7,-2.7 8,-0.0 2,-0.3 -0.600 25.8-161.4 -92.4 154.0 3.6 2.4 2.7 49 49 A S E -B 40 0B 80 -9,-0.2 2,-0.4 -2,-0.2 -9,-0.2 -0.969 6.4-166.6-136.0 150.7 1.0 5.2 2.5 50 50 A F E -B 39 0B 35 -11,-2.7 -11,-1.5 -2,-0.3 6,-0.1 -0.991 19.8-153.5-141.6 130.2 1.0 8.8 1.5 51 51 A N S S+ 0 0 94 -2,-0.4 2,-0.4 -13,-0.2 3,-0.1 0.225 84.3 68.9 -83.9 15.4 -1.6 11.5 2.0 52 52 A F S > S- 0 0 115 1,-0.1 4,-1.8 -13,-0.1 5,-0.2 -0.994 72.2-144.9-139.2 130.6 -0.2 13.3 -1.0 53 53 A K H > S+ 0 0 140 -2,-0.4 4,-1.9 1,-0.2 -1,-0.1 0.914 105.9 51.2 -56.5 -45.7 -0.3 12.3 -4.7 54 54 A K H > S+ 0 0 134 1,-0.2 4,-2.7 2,-0.2 5,-0.3 0.883 104.8 58.0 -60.0 -39.8 3.2 13.8 -5.3 55 55 A H H > S+ 0 0 63 1,-0.2 4,-2.7 2,-0.2 -1,-0.2 0.928 105.6 48.9 -56.5 -48.4 4.5 11.8 -2.3 56 56 A L H X S+ 0 0 36 -4,-1.8 4,-2.4 2,-0.2 -1,-0.2 0.928 111.7 49.5 -58.2 -47.6 3.4 8.5 -3.9 57 57 A K H X S+ 0 0 116 -4,-1.9 4,-1.5 1,-0.2 -2,-0.2 0.965 113.5 44.1 -56.5 -57.5 5.1 9.4 -7.2 58 58 A E H X S+ 0 0 102 -4,-2.7 4,-0.7 1,-0.2 -1,-0.2 0.883 111.1 56.7 -55.8 -40.7 8.4 10.4 -5.6 59 59 A H H >X S+ 0 0 20 -4,-2.7 3,-1.1 -5,-0.3 4,-0.9 0.927 101.4 55.5 -57.4 -47.8 8.3 7.3 -3.4 60 60 A M H 3X S+ 0 0 75 -4,-2.4 4,-2.5 1,-0.3 3,-0.3 0.884 90.0 76.6 -53.1 -41.6 8.0 5.0 -6.4 61 61 A K H 3X S+ 0 0 143 -4,-1.5 4,-1.0 1,-0.3 -1,-0.3 0.857 94.5 50.1 -35.5 -51.6 11.2 6.5 -7.8 62 62 A L H X< S+ 0 0 125 -3,-1.1 3,-1.3 -4,-0.7 4,-0.4 0.952 108.6 50.5 -55.4 -54.4 13.1 4.5 -5.3 63 63 A H H >< S+ 0 0 59 -4,-0.9 3,-2.5 -3,-0.3 -1,-0.2 0.896 97.2 69.8 -51.2 -44.8 11.3 1.2 -6.2 64 64 A S H 3< S+ 0 0 93 -4,-2.5 -1,-0.3 1,-0.3 -2,-0.2 0.857 79.9 77.6 -41.4 -44.0 12.1 1.9 -9.9 65 65 A D T << S+ 0 0 138 -3,-1.3 2,-0.6 -4,-1.0 -1,-0.3 0.833 87.6 66.7 -34.8 -45.7 15.7 1.2 -9.1 66 66 A T S < S- 0 0 108 -3,-2.5 2,-0.3 -4,-0.4 -1,-0.1 -0.736 75.7-166.8 -87.0 119.5 14.7 -2.5 -9.1 67 67 A R - 0 0 190 -2,-0.6 2,-0.3 2,-0.0 -2,-0.0 -0.692 6.8-178.1-104.5 158.2 13.7 -3.7 -12.6 68 68 A D - 0 0 142 -2,-0.3 2,-0.5 0, 0.0 3,-0.0 -0.978 24.9-116.9-151.0 160.5 12.0 -6.9 -13.6 69 69 A Y - 0 0 160 -2,-0.3 -2,-0.0 2,-0.2 0, 0.0 -0.879 13.9-140.4-106.2 131.4 10.8 -8.8 -16.7 70 70 A I S S+ 0 0 174 -2,-0.5 2,-0.2 2,-0.0 -1,-0.1 0.828 90.9 61.7 -54.6 -33.2 7.1 -9.5 -17.2 71 71 A C + 0 0 74 -3,-0.0 2,-0.3 5,-0.0 -2,-0.2 -0.647 65.9 169.4 -96.6 153.9 8.2 -12.9 -18.6 72 72 A E - 0 0 132 3,-0.4 5,-0.3 -2,-0.2 -2,-0.0 -0.988 38.8-131.7-160.0 154.9 10.0 -15.6 -16.6 73 73 A F S S+ 0 0 203 -2,-0.3 -1,-0.1 1,-0.2 -2,-0.0 0.937 100.7 68.0 -75.0 -49.4 11.0 -19.3 -16.8 74 74 A S S S+ 0 0 109 1,-0.3 -1,-0.2 2,-0.0 0, 0.0 0.842 115.7 28.8 -37.6 -44.6 9.8 -20.3 -13.3 75 75 A G S S- 0 0 49 2,-0.0 2,-0.6 0, 0.0 -3,-0.4 -0.797 81.0-157.1-127.2 91.6 6.3 -19.7 -14.6 76 76 A P - 0 0 107 0, 0.0 2,-0.3 0, 0.0 -3,-0.1 -0.533 19.4-133.6 -69.8 112.8 5.9 -20.3 -18.4 77 77 A S - 0 0 122 -2,-0.6 2,-0.3 -5,-0.3 -2,-0.0 -0.494 29.4-176.3 -70.4 129.9 2.8 -18.4 -19.6 78 78 A S 0 0 121 -2,-0.3 -1,-0.0 1,-0.1 0, 0.0 -0.897 360.0 360.0-127.6 157.0 0.6 -20.4 -21.8 79 79 A G 0 0 124 -2,-0.3 -1,-0.1 0, 0.0 -2,-0.0 -0.573 360.0 360.0 135.5 360.0 -2.6 -19.7 -23.8