==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 20-APR-06 2DM1 . COMPND 2 MOLECULE: PROTEIN VAV-2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR H.ENDO,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA,RIKEN STRUCTURAL . 73 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5880.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 36 49.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 24.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 13.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 4.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 111 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -94.9 2.5 -4.3 -19.4 2 2 A S + 0 0 139 1,-0.2 2,-0.3 0, 0.0 0, 0.0 0.897 360.0 139.2 52.2 44.2 4.1 -2.9 -16.3 3 3 A S + 0 0 120 2,-0.0 2,-0.3 0, 0.0 -1,-0.2 -0.902 23.2 163.4-120.7 148.9 1.9 0.2 -16.6 4 4 A G - 0 0 68 -2,-0.3 2,-0.3 -3,-0.1 0, 0.0 -0.972 16.9-152.5-156.1 168.0 0.1 2.2 -13.9 5 5 A S - 0 0 98 -2,-0.3 2,-0.2 2,-0.1 -2,-0.0 -0.860 29.2 -92.2-139.5 173.1 -1.6 5.4 -13.1 6 6 A S S S+ 0 0 99 -2,-0.3 59,-0.0 27,-0.0 27,-0.0 -0.595 71.2 91.9 -89.8 150.8 -2.4 7.7 -10.2 7 7 A G S S+ 0 0 71 -2,-0.2 27,-0.1 57,-0.1 -2,-0.1 0.457 89.5 13.9 127.8 87.7 -5.6 7.5 -8.1 8 8 A G S S+ 0 0 38 56,-0.4 26,-2.3 1,-0.3 2,-0.4 0.855 85.6 138.6 93.2 42.6 -5.9 5.4 -5.0 9 9 A T E -A 33 0A 8 55,-0.4 55,-2.1 24,-0.2 2,-0.4 -0.935 33.8-158.8-122.6 144.6 -2.3 4.7 -4.2 10 10 A A E -AB 32 63A 0 22,-2.6 22,-2.1 -2,-0.4 2,-0.5 -0.933 7.8-145.4-123.3 145.9 -0.4 4.6 -0.9 11 11 A V E -AB 31 62A 31 51,-1.5 51,-1.1 -2,-0.4 2,-0.7 -0.940 23.1-123.3-114.6 118.8 3.3 4.9 -0.2 12 12 A A E - B 0 61A 1 18,-1.5 17,-1.5 -2,-0.5 18,-0.3 -0.418 26.0-176.2 -60.7 103.6 4.8 3.0 2.7 13 13 A R S S+ 0 0 161 47,-1.2 2,-0.3 -2,-0.7 -1,-0.2 0.516 72.1 41.3 -79.8 -5.0 6.4 5.7 4.8 14 14 A Y S S- 0 0 129 46,-1.0 -1,-0.1 13,-0.1 2,-0.1 -0.995 92.5-106.1-146.4 136.9 7.7 3.1 7.2 15 15 A N - 0 0 112 -2,-0.3 2,-0.4 12,-0.1 12,-0.2 -0.370 38.7-177.0 -62.3 132.6 9.3 -0.4 6.6 16 16 A F B -C 26 0B 33 10,-2.4 10,-3.2 -2,-0.1 2,-0.6 -0.955 15.0-152.9-139.4 117.8 6.9 -3.2 7.5 17 17 A A - 0 0 77 -2,-0.4 2,-0.2 8,-0.2 8,-0.1 -0.793 22.2-126.8 -93.2 122.4 7.7 -6.9 7.3 18 18 A A - 0 0 30 -2,-0.6 7,-0.1 1,-0.2 3,-0.0 -0.478 22.3-174.1 -69.0 129.7 4.8 -9.2 6.7 19 19 A R + 0 0 231 -2,-0.2 2,-0.4 1,-0.1 -1,-0.2 0.852 68.8 54.5 -91.0 -42.4 4.5 -12.0 9.3 20 20 A D S > S- 0 0 65 1,-0.1 3,-1.1 4,-0.0 -1,-0.1 -0.761 84.1-125.6 -97.3 140.3 1.7 -14.0 7.8 21 21 A M T 3 S+ 0 0 162 -2,-0.4 -1,-0.1 1,-0.3 -3,-0.0 0.737 113.5 59.5 -52.4 -22.2 1.8 -15.3 4.2 22 22 A R T 3 S+ 0 0 148 32,-0.1 33,-1.9 2,-0.1 -1,-0.3 0.886 93.1 77.4 -74.7 -40.7 -1.5 -13.4 3.9 23 23 A E B < S-d 55 0C 49 -3,-1.1 2,-0.5 31,-0.3 33,-0.2 -0.117 81.7-122.3 -65.0 166.9 -0.1 -10.0 4.8 24 24 A L - 0 0 5 31,-2.0 2,-0.1 30,-0.1 30,-0.1 -0.962 18.6-122.2-119.6 129.0 2.0 -8.0 2.3 25 25 A S - 0 0 49 -2,-0.5 2,-0.4 -7,-0.1 -8,-0.2 -0.431 27.0-156.1 -68.3 136.3 5.6 -6.9 2.9 26 26 A L B -C 16 0B 7 -10,-3.2 -10,-2.4 -2,-0.1 2,-0.4 -0.948 6.3-164.6-119.4 136.1 6.1 -3.1 2.6 27 27 A R > - 0 0 185 -2,-0.4 3,-2.1 -12,-0.2 -15,-0.3 -0.950 39.3 -91.3-121.6 139.4 9.3 -1.3 1.9 28 28 A E T 3 S+ 0 0 125 -2,-0.4 -15,-0.2 1,-0.3 3,-0.1 -0.228 119.7 18.2 -48.0 106.3 10.1 2.4 2.4 29 29 A G T 3 S+ 0 0 53 -17,-1.5 2,-0.7 1,-0.3 -1,-0.3 0.638 89.4 139.2 102.1 19.2 9.1 3.9 -1.0 30 30 A D < - 0 0 26 -3,-2.1 -18,-1.5 -18,-0.3 -1,-0.3 -0.866 43.7-143.5-101.9 112.7 6.9 1.0 -2.2 31 31 A V E -A 11 0A 44 -2,-0.7 2,-0.4 -20,-0.2 -20,-0.2 -0.457 16.2-166.7 -73.9 143.6 3.7 2.2 -3.9 32 32 A V E -A 10 0A 0 -22,-2.1 -22,-2.6 -2,-0.1 2,-0.2 -0.995 13.3-136.2-137.0 131.0 0.6 0.1 -3.3 33 33 A R E -A 9 0A 88 15,-1.0 2,-0.9 -2,-0.4 15,-0.2 -0.583 17.9-128.8 -85.0 145.9 -2.7 0.3 -5.2 34 34 A I + 0 0 37 -26,-2.3 13,-0.2 -2,-0.2 3,-0.1 -0.819 37.7 159.4 -98.9 102.6 -6.1 0.2 -3.4 35 35 A Y + 0 0 124 11,-2.8 2,-0.4 -2,-0.9 -1,-0.2 0.941 69.6 16.4 -84.4 -57.2 -8.3 -2.5 -4.8 36 36 A S B -E 46 0C 52 10,-1.0 10,-1.7 1,-0.1 -1,-0.3 -0.976 52.4-168.4-124.6 132.8 -10.8 -3.1 -2.0 37 37 A R S S+ 0 0 186 -2,-0.4 2,-0.3 1,-0.2 6,-0.3 0.827 81.0 25.7 -84.4 -35.4 -11.4 -0.8 1.0 38 38 A I S S+ 0 0 142 1,-0.1 -1,-0.2 4,-0.1 4,-0.1 -0.974 70.5 103.8-132.3 146.0 -13.4 -3.3 3.0 39 39 A G S S+ 0 0 72 -2,-0.3 -1,-0.1 5,-0.1 3,-0.1 0.111 89.4 7.7 178.4 -44.6 -13.6 -7.1 3.0 40 40 A G S S+ 0 0 50 1,-0.4 2,-0.4 4,-0.2 5,-0.0 0.608 119.2 8.6-119.3 -83.0 -11.8 -8.6 6.0 41 41 A D S S- 0 0 89 1,-0.0 -1,-0.4 3,-0.0 3,-0.3 -0.877 80.0-102.4-111.3 141.6 -10.6 -6.3 8.8 42 42 A Q S S+ 0 0 163 -2,-0.4 2,-1.0 1,-0.2 3,-0.1 -0.283 103.6 15.7 -59.2 139.9 -11.3 -2.6 9.2 43 43 A G S S+ 0 0 44 -6,-0.3 -1,-0.2 1,-0.3 15,-0.1 -0.398 98.0 106.4 94.6 -57.8 -8.4 -0.4 8.2 44 44 A W - 0 0 74 -2,-1.0 2,-0.3 -3,-0.3 -1,-0.3 -0.233 55.1-158.4 -57.1 142.9 -6.4 -3.0 6.3 45 45 A W E - F 0 56C 33 11,-2.5 11,-1.9 -3,-0.1 2,-0.7 -0.924 15.0-126.6-127.3 152.3 -6.5 -2.6 2.5 46 46 A K E +EF 36 55C 75 -10,-1.7 -11,-2.8 -2,-0.3 -10,-1.0 -0.869 47.1 139.6-101.9 114.4 -5.9 -5.0 -0.4 47 47 A G E - F 0 54C 0 7,-0.7 7,-0.6 -2,-0.7 2,-0.3 -0.397 37.6-126.6-129.4-153.4 -3.4 -3.8 -2.9 48 48 A E E + F 0 53C 75 -15,-0.2 -15,-1.0 5,-0.2 2,-0.3 -0.892 27.1 154.0-168.3 135.0 -0.5 -5.1 -5.1 49 49 A T E > + F 0 52C 15 3,-1.8 3,-1.1 -2,-0.3 -17,-0.1 -0.962 65.1 14.5-164.3 145.9 3.1 -4.1 -5.7 50 50 A N T 3 S- 0 0 101 -2,-0.3 3,-0.1 1,-0.3 -18,-0.0 0.787 129.8 -60.6 58.0 27.6 6.4 -5.8 -6.9 51 51 A G T 3 S+ 0 0 71 1,-0.2 2,-0.4 0, 0.0 -1,-0.3 0.820 111.5 122.6 70.4 31.1 4.3 -8.7 -8.1 52 52 A R E < - F 0 49C 142 -3,-1.1 -3,-1.8 -27,-0.1 2,-0.4 -0.983 40.4-169.0-129.4 137.8 2.9 -9.4 -4.6 53 53 A I E + F 0 48C 90 -2,-0.4 2,-0.3 -5,-0.2 -5,-0.2 -0.977 32.5 93.3-128.0 139.0 -0.6 -9.5 -3.3 54 54 A G E S- F 0 47C 7 -7,-0.6 -7,-0.7 -2,-0.4 2,-0.5 -0.944 70.8 -43.0 176.4-155.7 -1.9 -9.6 0.2 55 55 A W E +dF 23 46C 58 -33,-1.9 -31,-2.0 -2,-0.3 -9,-0.2 -0.913 51.4 173.2-108.7 122.8 -3.2 -7.6 3.2 56 56 A F E - F 0 45C 0 -11,-1.9 -11,-2.5 -2,-0.5 -31,-0.1 -0.970 31.7-110.4-130.5 144.0 -1.3 -4.5 4.2 57 57 A P - 0 0 11 0, 0.0 -13,-0.1 0, 0.0 4,-0.1 -0.343 10.9-149.9 -69.7 149.5 -2.1 -1.8 6.8 58 58 A S S S+ 0 0 23 1,-0.2 3,-0.3 2,-0.1 5,-0.2 0.590 92.9 66.6 -94.2 -14.1 -3.1 1.7 5.7 59 59 A T S S+ 0 0 115 1,-0.2 -1,-0.2 3,-0.1 -15,-0.0 0.745 97.6 53.5 -77.5 -24.5 -1.6 3.4 8.8 60 60 A Y S S+ 0 0 99 -48,-0.1 -47,-1.2 -47,-0.0 -46,-1.0 0.579 110.0 57.9 -85.2 -11.1 1.9 2.4 7.7 61 61 A V E S-B 12 0A 12 -3,-0.3 2,-0.5 -49,-0.3 -49,-0.2 -0.659 77.7-129.0-114.4 171.4 1.3 4.0 4.3 62 62 A E E -B 11 0A 115 -51,-1.1 -51,-1.5 -2,-0.2 2,-0.5 -0.946 21.4-127.6-127.8 111.7 0.4 7.5 3.1 63 63 A E E -B 10 0A 118 -2,-0.5 2,-0.3 -53,-0.2 -53,-0.2 -0.387 29.2-134.9 -58.6 108.0 -2.5 8.1 0.7 64 64 A E + 0 0 98 -55,-2.1 -56,-0.4 -2,-0.5 -55,-0.4 -0.494 34.9 168.1 -69.5 128.0 -1.0 10.1 -2.1 65 65 A G + 0 0 61 1,-0.4 -1,-0.1 -2,-0.3 -58,-0.1 -0.030 43.7 6.9-114.8-141.7 -3.2 13.0 -3.1 66 66 A I - 0 0 180 1,-0.1 2,-0.4 -2,-0.1 -1,-0.4 -0.042 65.6-154.5 -41.9 139.0 -2.9 16.2 -5.3 67 67 A Q - 0 0 135 -3,-0.1 2,-0.2 0, 0.0 -1,-0.1 -0.984 14.3-123.4-127.9 125.2 0.5 16.3 -7.1 68 68 A S + 0 0 109 -2,-0.4 3,-0.2 1,-0.1 -2,-0.0 -0.452 35.1 170.7 -66.7 128.1 2.2 19.5 -8.2 69 69 A G + 0 0 58 -2,-0.2 2,-1.8 1,-0.2 -1,-0.1 0.744 61.2 36.0-100.9 -92.2 2.9 19.4 -12.0 70 70 A P S S+ 0 0 142 0, 0.0 2,-0.5 0, 0.0 -1,-0.2 -0.476 74.5 152.7 -69.7 85.0 4.1 22.6 -13.7 71 71 A S - 0 0 101 -2,-1.8 2,-0.2 -3,-0.2 -3,-0.0 -0.928 18.8-176.6-122.9 107.8 6.3 24.0 -10.9 72 72 A S 0 0 115 -2,-0.5 0, 0.0 1,-0.2 0, 0.0 -0.565 360.0 360.0 -98.8 164.2 9.2 26.2 -12.0 73 73 A G 0 0 125 -2,-0.2 -1,-0.2 0, 0.0 0, 0.0 0.426 360.0 360.0 -68.7 360.0 11.9 27.8 -9.8