==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSFERASE 21-APR-06 2DMJ . COMPND 2 MOLECULE: POLY (ADP-RIBOSE) POLYMERASE FAMILY, MEMBER 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL . 106 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7882.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 55 51.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 2.8 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 15.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 11.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 4.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 15.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 129 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 55.3 -4.6 10.9 25.1 2 2 A S - 0 0 126 1,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.215 360.0-142.8 -58.1 147.0 -1.4 9.5 23.7 3 3 A S - 0 0 127 2,-0.0 -1,-0.1 1,-0.0 2,-0.0 0.939 33.3-156.9 -77.6 -50.9 1.8 11.6 24.2 4 4 A G - 0 0 61 1,-0.1 2,-0.4 2,-0.0 -1,-0.0 0.049 11.2-116.8 89.3 158.4 3.5 10.8 20.9 5 5 A S - 0 0 128 -2,-0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.907 22.5-156.9-140.4 109.3 7.1 10.9 19.8 6 6 A S + 0 0 131 -2,-0.4 -2,-0.0 1,-0.1 0, 0.0 -0.178 50.2 100.6 -75.9 173.2 8.3 13.3 17.1 7 7 A G + 0 0 78 1,-0.2 2,-0.5 -2,-0.0 -1,-0.1 0.748 40.3 148.0 114.6 47.2 11.4 12.8 15.0 8 8 A M - 0 0 174 2,-0.0 2,-0.5 0, 0.0 -1,-0.2 -0.954 24.0-168.0-116.9 123.4 10.4 11.5 11.6 9 9 A A - 0 0 103 -2,-0.5 2,-0.4 0, 0.0 0, 0.0 -0.934 5.3-178.0-113.4 128.5 12.3 12.3 8.5 10 10 A E - 0 0 118 -2,-0.5 3,-0.2 1,-0.1 -2,-0.0 -0.988 17.0-172.3-129.1 127.8 11.0 11.5 5.0 11 11 A S S S+ 0 0 124 -2,-0.4 2,-0.6 1,-0.2 -1,-0.1 0.872 83.7 40.8 -82.0 -40.9 12.8 12.1 1.7 12 12 A S - 0 0 54 1,-0.1 2,-1.3 2,-0.0 -1,-0.2 -0.925 65.2-161.5-115.5 110.7 9.8 11.3 -0.5 13 13 A D - 0 0 128 -2,-0.6 -1,-0.1 -3,-0.2 -3,-0.0 -0.198 26.8-176.6 -81.9 45.8 6.4 12.5 0.6 14 14 A K - 0 0 64 -2,-1.3 64,-0.1 1,-0.1 63,-0.1 -0.086 26.6-140.0 -45.1 139.8 4.7 10.0 -1.7 15 15 A L S S+ 0 0 104 62,-0.3 30,-0.6 29,-0.1 2,-0.3 0.904 85.5 46.3 -71.6 -42.9 0.9 10.3 -1.7 16 16 A Y E -Ab 44 78A 40 61,-0.7 63,-2.3 28,-0.2 2,-0.3 -0.684 63.8-174.2-101.8 155.9 0.3 6.6 -1.8 17 17 A R E - b 0 79A 106 26,-0.8 2,-0.5 -2,-0.3 63,-0.2 -0.823 3.6-167.6-154.1 108.6 2.0 3.9 0.4 18 18 A V + 0 0 1 61,-2.2 2,-0.3 -2,-0.3 24,-0.2 -0.843 23.7 144.1-101.5 131.1 1.5 0.2 -0.0 19 19 A E E -C 41 0A 43 22,-1.7 22,-1.0 -2,-0.5 2,-0.4 -0.973 56.8 -84.7-162.9 148.4 2.7 -2.2 2.7 20 20 A Y E -C 40 0A 87 -2,-0.3 20,-0.2 20,-0.2 18,-0.1 -0.394 61.0-103.1 -59.5 113.5 1.8 -5.5 4.3 21 21 A A - 0 0 5 18,-3.3 17,-1.0 -2,-0.4 -1,-0.1 0.063 27.7-156.4 -35.9 143.7 -0.7 -4.5 7.1 22 22 A K + 0 0 154 1,-0.3 2,-0.3 15,-0.1 -1,-0.1 0.835 69.2 3.2 -95.1 -42.6 1.0 -4.6 10.6 23 23 A S S S- 0 0 62 13,-0.1 2,-0.4 14,-0.1 3,-0.4 -0.870 72.2-107.1-138.9 171.3 -2.1 -5.1 12.7 24 24 A G S S+ 0 0 41 -2,-0.3 13,-0.1 1,-0.2 -3,-0.0 -0.257 96.4 84.0 -96.3 46.8 -5.9 -5.6 12.4 25 25 A R + 0 0 218 -2,-0.4 -1,-0.2 11,-0.1 10,-0.1 0.735 55.7 103.2-111.9 -42.8 -6.8 -2.2 13.6 26 26 A A - 0 0 19 -3,-0.4 9,-1.6 8,-0.1 2,-0.2 -0.154 63.0-144.8 -46.5 129.9 -6.5 -0.0 10.4 27 27 A S B -E 34 0B 79 7,-0.2 31,-0.4 5,-0.0 2,-0.4 -0.570 4.6-125.6 -98.8 163.9 -10.0 0.7 9.1 28 28 A C - 0 0 4 5,-1.5 4,-0.5 -2,-0.2 31,-0.2 -0.901 5.8-157.7-113.3 139.2 -11.2 1.0 5.5 29 29 A K S S+ 0 0 125 29,-0.9 30,-0.1 -2,-0.4 -1,-0.1 -0.081 90.9 50.8-102.4 32.5 -13.1 3.9 4.0 30 30 A K S S+ 0 0 75 3,-0.1 -1,-0.1 36,-0.0 29,-0.1 0.566 125.8 14.2-132.2 -43.0 -14.5 1.9 1.1 31 31 A C S S- 0 0 48 2,-0.1 -2,-0.1 0, 0.0 3,-0.1 0.408 93.6-125.9-116.4 -4.7 -16.1 -1.2 2.6 32 32 A S + 0 0 107 -4,-0.5 2,-0.2 1,-0.2 -3,-0.1 0.947 65.1 130.1 56.9 52.5 -16.2 -0.1 6.2 33 33 A E - 0 0 124 -5,-0.1 -5,-1.5 -7,-0.0 2,-0.8 -0.769 66.4 -97.0-128.8 174.0 -14.3 -3.1 7.5 34 34 A S B -E 27 0B 83 -2,-0.2 -7,-0.2 -7,-0.2 -8,-0.1 -0.827 40.6-126.1 -99.0 104.5 -11.3 -4.0 9.6 35 35 A I - 0 0 0 -9,-1.6 -9,-0.1 -2,-0.8 6,-0.0 -0.198 29.7-120.4 -49.6 127.1 -8.2 -4.6 7.5 36 36 A P > - 0 0 66 0, 0.0 3,-0.7 0, 0.0 2,-0.2 -0.269 28.8 -97.4 -69.8 157.0 -6.7 -8.0 8.4 37 37 A K T 3 S+ 0 0 146 1,-0.2 -15,-0.1 -13,-0.1 3,-0.1 -0.525 104.9 18.6 -77.7 141.7 -3.2 -8.4 9.7 38 38 A D T 3 S+ 0 0 124 -17,-1.0 2,-0.4 1,-0.2 -1,-0.2 0.883 96.2 135.1 67.5 39.6 -0.5 -9.4 7.2 39 39 A S < - 0 0 24 -3,-0.7 -18,-3.3 -20,-0.1 2,-0.7 -0.924 64.4-105.7-122.6 146.7 -2.6 -8.2 4.2 40 40 A L E +C 20 0A 22 -2,-0.4 21,-0.9 -20,-0.2 2,-0.3 -0.576 53.2 162.1 -72.6 110.7 -1.7 -6.2 1.2 41 41 A R E -CD 19 60A 17 -22,-1.0 -22,-1.7 -2,-0.7 2,-0.2 -0.912 26.4-141.3-130.4 157.3 -3.2 -2.7 1.7 42 42 A M E - D 0 59A 0 17,-2.7 17,-2.4 -2,-0.3 2,-0.3 -0.688 9.7-142.1-113.7 168.1 -2.7 0.7 0.2 43 43 A A E - D 0 58A 7 15,-0.3 -26,-0.8 -2,-0.2 2,-0.4 -0.967 8.4-165.0-132.8 148.5 -2.7 4.3 1.6 44 44 A I E -AD 16 57A 6 13,-1.6 13,-3.0 -2,-0.3 2,-0.8 -0.997 17.1-136.9-136.9 133.1 -4.0 7.6 0.4 45 45 A M E + D 0 56A 63 -30,-0.6 2,-0.3 -2,-0.4 9,-0.0 -0.784 37.0 163.2 -91.8 109.4 -3.2 11.1 1.6 46 46 A V E - D 0 55A 46 9,-1.4 9,-2.2 -2,-0.8 2,-0.7 -0.875 41.1-111.1-125.3 158.1 -6.4 13.2 1.7 47 47 A Q E - D 0 54A 107 -2,-0.3 7,-0.3 7,-0.2 5,-0.1 -0.795 31.1-148.0 -92.7 113.0 -7.5 16.4 3.4 48 48 A S E > - D 0 53A 25 5,-2.9 5,-0.8 -2,-0.7 4,-0.4 -0.607 7.4-147.5 -82.5 136.5 -10.0 15.9 6.2 49 49 A P T 5S+ 0 0 120 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.837 101.1 37.6 -69.8 -34.3 -12.6 18.6 6.8 50 50 A M T 5S+ 0 0 184 1,-0.2 -2,-0.0 3,-0.1 -3,-0.0 0.875 118.0 47.7 -84.4 -42.3 -12.8 17.8 10.5 51 51 A F T 5S- 0 0 151 2,-0.2 -1,-0.2 1,-0.1 3,-0.1 0.496 94.9-145.5 -76.8 -3.0 -9.1 17.1 11.0 52 52 A D T 5S+ 0 0 135 -4,-0.4 2,-0.2 1,-0.2 -1,-0.1 0.808 72.4 58.0 40.4 35.4 -8.4 20.3 9.1 53 53 A G E -D 41 0A 37 -2,-0.4 4,-3.0 -19,-0.2 5,-0.3 -0.018 43.7 -96.2 -49.6 157.6 -7.9 -2.8 0.7 61 61 A F T 4 S+ 0 0 40 -21,-0.9 4,-0.2 1,-0.2 -1,-0.1 0.835 129.0 28.1 -46.0 -36.7 -6.0 -4.1 -2.3 62 62 A S T >> S+ 0 0 39 2,-0.1 4,-2.4 3,-0.1 3,-2.2 0.895 114.3 60.3 -91.5 -52.0 -9.3 -3.9 -4.2 63 63 A C H 3> S+ 0 0 3 1,-0.3 4,-2.2 2,-0.2 5,-0.3 0.878 99.2 60.4 -42.7 -47.3 -11.1 -1.1 -2.4 64 64 A F H 3<>S+ 0 0 0 -4,-3.0 5,-1.0 1,-0.2 4,-0.5 0.841 112.2 38.9 -51.6 -35.6 -8.2 1.2 -3.4 65 65 A W H <45S+ 0 0 6 -3,-2.2 3,-0.5 -5,-0.3 -1,-0.2 0.811 106.8 65.2 -84.7 -33.4 -9.1 0.5 -7.0 66 66 A K H <5S+ 0 0 124 -4,-2.4 -2,-0.2 1,-0.3 -3,-0.2 0.940 97.0 55.1 -53.8 -52.3 -12.9 0.5 -6.4 67 67 A V T <5S- 0 0 65 -4,-2.2 -1,-0.3 -5,-0.1 -2,-0.2 0.839 124.3-105.1 -51.1 -35.6 -12.9 4.2 -5.5 68 68 A G T 5 + 0 0 58 -3,-0.5 2,-0.9 -4,-0.5 -3,-0.2 0.768 63.8 154.2 110.0 42.9 -11.2 4.8 -8.8 69 69 A H < - 0 0 63 -5,-1.0 -1,-0.1 -4,-0.1 2,-0.1 -0.728 22.7-170.9-104.2 83.4 -7.5 5.6 -8.0 70 70 A S - 0 0 84 -2,-0.9 2,-0.4 29,-0.1 27,-0.1 -0.393 3.5-161.3 -73.2 150.0 -5.6 4.6 -11.1 71 71 A I - 0 0 3 25,-0.5 28,-0.1 1,-0.2 -2,-0.0 -0.973 15.7-173.3-139.2 122.4 -1.8 4.5 -11.1 72 72 A R S S+ 0 0 192 -2,-0.4 -1,-0.2 1,-0.2 3,-0.1 0.985 87.9 15.9 -74.5 -64.5 0.5 4.6 -14.1 73 73 A H >> + 0 0 128 1,-0.1 4,-2.5 23,-0.1 3,-1.2 -0.747 64.1 168.8-116.0 83.3 3.9 4.0 -12.4 74 74 A P T 34 + 0 0 4 0, 0.0 7,-0.3 0, 0.0 -1,-0.1 0.529 69.3 78.9 -69.8 -4.9 3.2 2.6 -8.9 75 75 A D T 34 S+ 0 0 75 6,-0.1 7,-0.4 2,-0.1 5,-0.1 0.835 116.9 8.4 -72.3 -33.6 6.9 1.8 -8.7 76 76 A V T <4 S+ 0 0 84 -3,-1.2 -1,-0.1 5,-0.1 4,-0.1 0.703 130.8 53.8-114.6 -39.4 7.8 5.4 -7.9 77 77 A E S < S+ 0 0 94 -4,-2.5 -61,-0.7 1,-0.1 2,-0.6 0.914 107.8 55.1 -64.3 -44.3 4.4 7.1 -7.4 78 78 A V E > S-b 16 0A 1 -5,-0.4 3,-0.6 -4,-0.1 4,-0.3 -0.828 86.3-135.6 -97.1 122.2 3.4 4.5 -4.8 79 79 A D E 3 S+b 17 0A 43 -63,-2.3 -61,-2.2 -2,-0.6 2,-0.8 -0.184 84.7 32.9 -68.4 164.9 5.8 4.1 -1.8 80 80 A G T >> S+ 0 0 5 -63,-0.2 4,-2.6 1,-0.1 3,-1.0 -0.087 85.7 107.3 80.7 -39.0 6.7 0.7 -0.5 81 81 A F T <4 S+ 0 0 0 -2,-0.8 8,-0.2 -3,-0.6 -2,-0.1 0.872 81.6 46.2 -34.8 -58.6 6.5 -0.7 -4.0 82 82 A S T 34 S+ 0 0 90 -7,-0.4 -1,-0.3 -4,-0.3 7,-0.1 0.871 111.9 52.7 -55.6 -38.9 10.3 -1.0 -4.2 83 83 A E T <4 S+ 0 0 145 -3,-1.0 -1,-0.2 6,-0.0 -2,-0.2 0.901 93.9 88.7 -64.6 -42.0 10.3 -2.5 -0.7 84 84 A L S < S- 0 0 8 -4,-2.6 -4,-0.0 -66,-0.2 -65,-0.0 -0.048 90.1 -95.7 -53.4 159.8 7.7 -5.2 -1.7 85 85 A R > - 0 0 189 1,-0.1 4,-2.8 4,-0.0 5,-0.2 -0.227 36.6 -99.4 -74.8 168.3 9.0 -8.5 -3.2 86 86 A W H > S+ 0 0 185 2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.945 121.9 52.2 -52.5 -54.7 9.3 -9.2 -6.9 87 87 A D H > S+ 0 0 107 1,-0.2 4,-2.6 2,-0.2 3,-0.2 0.947 112.5 43.7 -46.5 -62.9 6.1 -11.1 -7.0 88 88 A D H > S+ 0 0 26 1,-0.2 4,-2.9 2,-0.2 5,-0.4 0.934 109.8 57.0 -49.4 -54.4 4.1 -8.3 -5.3 89 89 A Q H X S+ 0 0 43 -4,-2.8 4,-1.6 1,-0.3 -1,-0.2 0.900 111.0 43.5 -44.1 -51.1 5.7 -5.7 -7.5 90 90 A Q H X S+ 0 0 63 -4,-2.5 4,-2.4 -3,-0.2 -1,-0.3 0.908 112.5 53.7 -63.4 -43.4 4.5 -7.5 -10.6 91 91 A K H X S+ 0 0 77 -4,-2.6 4,-2.1 -5,-0.2 -2,-0.2 0.967 107.4 48.6 -55.6 -58.4 1.1 -8.1 -9.1 92 92 A V H X S+ 0 0 0 -4,-2.9 4,-3.2 1,-0.2 -1,-0.2 0.866 110.6 54.2 -50.4 -39.9 0.4 -4.4 -8.3 93 93 A K H X S+ 0 0 74 -4,-1.6 4,-2.4 -5,-0.4 -1,-0.2 0.958 105.3 50.6 -60.5 -53.4 1.6 -3.6 -11.8 94 94 A K H X S+ 0 0 162 -4,-2.4 4,-1.4 1,-0.2 -1,-0.2 0.886 116.7 42.9 -52.3 -42.3 -0.9 -5.9 -13.5 95 95 A T H X S+ 0 0 26 -4,-2.1 4,-2.5 2,-0.2 3,-0.5 0.979 108.5 55.3 -69.1 -58.4 -3.7 -4.4 -11.4 96 96 A A H < S+ 0 0 1 -4,-3.2 -25,-0.5 1,-0.3 -2,-0.2 0.871 108.4 51.4 -41.3 -47.4 -2.7 -0.8 -11.8 97 97 A E H < S+ 0 0 122 -4,-2.4 -1,-0.3 1,-0.2 -2,-0.2 0.925 108.5 50.5 -58.6 -47.1 -2.8 -1.2 -15.5 98 98 A A H < S- 0 0 76 -4,-1.4 -1,-0.2 -3,-0.5 -2,-0.2 0.901 96.1-147.6 -58.6 -43.1 -6.3 -2.7 -15.4 99 99 A G < + 0 0 41 -4,-2.5 2,-0.2 -28,-0.1 -3,-0.1 0.933 65.3 31.4 73.9 47.5 -7.6 0.1 -13.2 100 100 A G S S- 0 0 23 -5,-0.4 -34,-0.1 1,-0.1 -37,-0.1 -0.546 78.6-110.5 145.5 148.9 -10.1 -1.8 -11.2 101 101 A S S S- 0 0 80 -39,-0.2 -1,-0.1 -2,-0.2 -38,-0.0 0.965 73.1 -85.3 -67.5 -54.2 -10.8 -5.2 -9.7 102 102 A G - 0 0 50 -3,-0.1 -2,-0.1 1,-0.0 -1,-0.1 0.229 29.2-159.6 140.1 91.6 -13.7 -6.1 -12.0 103 103 A P + 0 0 122 0, 0.0 2,-0.6 0, 0.0 -2,-0.0 0.410 41.0 150.4 -69.7 4.3 -17.4 -5.0 -11.5 104 104 A S + 0 0 118 2,-0.1 2,-0.3 1,-0.0 0, 0.0 -0.138 25.2 179.9 -43.2 91.3 -18.3 -7.9 -13.9 105 105 A S 0 0 117 -2,-0.6 -1,-0.0 1,-0.2 0, 0.0 -0.785 360.0 360.0-103.4 145.6 -21.7 -8.6 -12.3 106 106 A G 0 0 130 -2,-0.3 -1,-0.2 0, 0.0 -2,-0.1 0.734 360.0 360.0 80.2 360.0 -24.1 -11.3 -13.5