==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 24-APR-06 2DMQ . COMPND 2 MOLECULE: LIM/HOMEOBOX PROTEIN LHX9; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.OHNISHI,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA, . 80 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7488.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 58.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 5.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 7.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 35 43.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 133 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 49.0 16.4 -11.1 -12.0 2 2 A S - 0 0 116 2,-0.0 2,-0.6 1,-0.0 3,-0.0 -0.919 360.0-160.3-147.6 116.8 12.7 -11.0 -12.6 3 3 A S - 0 0 128 -2,-0.3 -1,-0.0 1,-0.1 0, 0.0 -0.169 69.0 -80.6 -87.3 41.7 9.9 -10.7 -10.0 4 4 A G - 0 0 68 -2,-0.6 2,-0.7 1,-0.2 -1,-0.1 0.945 52.1-156.0 59.1 94.8 7.3 -12.0 -12.4 5 5 A S + 0 0 127 2,-0.0 2,-0.3 -3,-0.0 -1,-0.2 -0.890 27.6 151.0-107.6 109.1 6.2 -9.2 -14.7 6 6 A S - 0 0 97 -2,-0.7 2,-1.6 2,-0.1 0, 0.0 -0.916 53.5-105.3-134.2 160.0 2.8 -9.7 -16.2 7 7 A G + 0 0 63 -2,-0.3 2,-0.4 2,-0.0 -2,-0.0 -0.581 67.7 130.5 -87.2 78.6 -0.1 -7.5 -17.4 8 8 A K + 0 0 176 -2,-1.6 2,-0.3 2,-0.0 -2,-0.1 -0.951 19.5 142.8-136.1 115.1 -2.5 -7.9 -14.6 9 9 A R + 0 0 168 -2,-0.4 2,-0.3 2,-0.0 -2,-0.0 -0.996 10.5 160.7-150.6 148.7 -4.3 -5.0 -12.8 10 10 A M - 0 0 154 -2,-0.3 2,-0.4 2,-0.0 -2,-0.0 -0.982 26.0-130.0-164.1 157.0 -7.7 -4.2 -11.3 11 11 A R + 0 0 202 -2,-0.3 2,-0.3 43,-0.0 -2,-0.0 -0.895 27.6 165.5-117.1 145.9 -9.4 -1.8 -8.9 12 12 A T - 0 0 88 -2,-0.4 2,-0.2 0, 0.0 -2,-0.0 -0.971 34.0-101.2-152.2 163.7 -11.7 -2.6 -6.0 13 13 A S - 0 0 121 -2,-0.3 2,-0.3 1,-0.0 0, 0.0 -0.521 33.9-166.8 -88.2 156.7 -13.3 -1.1 -2.9 14 14 A F - 0 0 65 -2,-0.2 2,-0.1 4,-0.0 -1,-0.0 -0.923 18.6-109.8-139.7 163.9 -12.1 -1.6 0.6 15 15 A K > - 0 0 150 -2,-0.3 4,-0.7 1,-0.1 5,-0.1 -0.300 23.6-121.0 -87.5 175.1 -13.3 -1.1 4.2 16 16 A H H > S+ 0 0 173 3,-0.1 4,-0.8 2,-0.1 -1,-0.1 0.606 107.2 55.7 -90.9 -14.8 -12.0 1.4 6.8 17 17 A H H > S+ 0 0 171 2,-0.2 4,-1.0 3,-0.1 -1,-0.1 0.972 110.7 37.0 -79.9 -65.5 -11.1 -1.3 9.2 18 18 A Q H >> S+ 0 0 31 1,-0.2 4,-1.7 2,-0.2 3,-1.1 0.930 117.0 53.9 -52.8 -50.5 -8.8 -3.6 7.2 19 19 A L H 3X>S+ 0 0 26 -4,-0.7 4,-2.5 1,-0.3 5,-0.6 0.913 96.3 66.7 -51.1 -48.0 -7.2 -0.6 5.5 20 20 A R H 3X5S+ 0 0 165 -4,-0.8 4,-1.5 1,-0.3 -1,-0.3 0.856 105.7 43.6 -41.3 -43.8 -6.4 1.0 8.8 21 21 A T H X5S+ 0 0 0 -4,-1.7 4,-2.6 2,-0.2 3,-0.7 0.995 115.5 45.8 -66.8 -65.5 -2.6 -1.7 5.9 23 23 A K H 3X5S+ 0 0 113 -4,-2.5 4,-0.9 1,-0.3 -3,-0.2 0.892 113.1 52.6 -43.9 -49.1 -2.3 2.0 5.4 24 24 A S H >X - 0 0 114 -2,-0.2 4,-2.6 1,-0.1 3,-0.4 -0.360 31.7 -93.0 -82.9 165.6 8.3 -9.3 3.6 34 34 A A H > S+ 0 0 49 1,-0.2 4,-3.1 2,-0.2 5,-0.4 0.906 126.1 55.3 -40.7 -58.2 6.4 -12.5 3.2 35 35 A K H > S+ 0 0 121 1,-0.3 4,-2.1 2,-0.2 -1,-0.2 0.905 111.1 44.3 -42.9 -53.9 6.0 -12.9 6.9 36 36 A D H > S+ 0 0 53 -3,-0.4 4,-2.4 2,-0.2 -1,-0.3 0.893 113.3 52.4 -60.3 -41.4 4.4 -9.4 7.1 37 37 A L H X S+ 0 0 3 -4,-2.6 4,-2.6 2,-0.2 -2,-0.2 0.961 111.5 43.9 -59.9 -54.4 2.2 -10.2 4.1 38 38 A K H < S+ 0 0 121 -4,-3.1 4,-0.4 1,-0.2 -1,-0.2 0.837 114.4 52.3 -60.3 -33.5 0.9 -13.5 5.5 39 39 A Q H >X S+ 0 0 89 -4,-2.1 4,-1.7 -5,-0.4 3,-0.6 0.863 110.6 46.8 -71.1 -36.9 0.3 -11.7 8.8 40 40 A L H 3X>S+ 0 0 5 -4,-2.4 4,-2.4 1,-0.2 5,-0.7 0.895 96.7 70.5 -71.8 -41.4 -1.6 -8.9 7.2 41 41 A A H 3<5S+ 0 0 16 -4,-2.6 4,-0.4 1,-0.2 -1,-0.2 0.721 109.4 38.7 -48.4 -21.1 -3.8 -11.2 5.1 42 42 A Q H <45S+ 0 0 157 -3,-0.6 -1,-0.2 -4,-0.4 -2,-0.2 0.869 108.6 56.0 -95.8 -51.4 -5.3 -12.1 8.5 43 43 A K H <5S+ 0 0 128 -4,-1.7 -2,-0.2 1,-0.2 -3,-0.1 0.762 129.7 21.7 -53.3 -25.0 -5.4 -8.7 10.2 44 44 A T T <5S- 0 0 21 -4,-2.4 -1,-0.2 2,-0.1 -2,-0.2 0.714 100.0-129.6-111.6 -37.5 -7.4 -7.6 7.2 45 45 A G < + 0 0 57 -5,-0.7 -4,-0.1 -4,-0.4 -3,-0.1 0.120 66.1 121.4 106.2 -20.4 -8.8 -10.8 5.8 46 46 A L - 0 0 37 -6,-0.3 2,-0.3 1,-0.1 -1,-0.3 0.084 65.8 -96.5 -64.0-176.7 -7.6 -10.2 2.3 47 47 A T > - 0 0 80 1,-0.1 4,-2.6 -3,-0.1 5,-0.2 -0.777 28.4-108.3-108.1 152.5 -5.3 -12.5 0.4 48 48 A K H > S+ 0 0 99 -2,-0.3 4,-3.2 1,-0.2 5,-0.2 0.891 120.5 50.0 -39.3 -55.1 -1.5 -12.2 -0.1 49 49 A R H > S+ 0 0 190 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.960 109.0 49.5 -50.4 -61.7 -2.1 -11.3 -3.8 50 50 A V H > S+ 0 0 51 1,-0.2 4,-2.5 2,-0.2 -1,-0.2 0.874 115.0 46.9 -46.0 -43.9 -4.6 -8.6 -3.0 51 51 A L H X S+ 0 0 0 -4,-2.6 4,-2.9 2,-0.2 5,-0.3 0.978 108.8 51.7 -64.1 -58.3 -2.2 -7.2 -0.4 52 52 A Q H X S+ 0 0 71 -4,-3.2 4,-2.1 -5,-0.2 -2,-0.2 0.900 116.4 42.3 -44.6 -50.6 0.9 -7.3 -2.6 53 53 A V H X S+ 0 0 45 -4,-2.7 4,-2.7 -5,-0.2 3,-0.3 0.993 111.7 51.2 -61.7 -65.3 -1.0 -5.4 -5.3 54 54 A W H X S+ 0 0 34 -4,-2.5 4,-1.9 1,-0.3 -2,-0.2 0.876 112.6 48.6 -38.5 -52.2 -2.8 -2.9 -3.1 55 55 A F H X S+ 0 0 6 -4,-2.9 4,-1.6 1,-0.2 -1,-0.3 0.926 110.3 50.6 -56.9 -47.8 0.6 -2.0 -1.5 56 56 A Q H X S+ 0 0 104 -4,-2.1 4,-1.1 -3,-0.3 -1,-0.2 0.874 107.4 54.9 -58.8 -38.7 2.2 -1.6 -4.9 57 57 A N H X S+ 0 0 84 -4,-2.7 4,-2.4 2,-0.2 3,-0.3 0.889 102.4 58.0 -62.7 -40.5 -0.6 0.7 -6.0 58 58 A A H X S+ 0 0 7 -4,-1.9 4,-2.9 -5,-0.3 5,-0.4 0.970 99.4 54.8 -53.6 -61.6 0.0 3.0 -3.0 59 59 A R H X S+ 0 0 106 -4,-1.6 4,-1.6 1,-0.3 -1,-0.2 0.832 112.2 47.2 -41.6 -39.1 3.7 3.7 -3.9 60 60 A A H < S+ 0 0 65 -4,-1.1 4,-0.4 -3,-0.3 -1,-0.3 0.914 114.7 44.6 -71.2 -44.7 2.4 4.8 -7.3 61 61 A K H >X S+ 0 0 130 -4,-2.4 3,-2.6 -3,-0.3 4,-1.0 0.970 111.4 51.6 -64.0 -55.7 -0.4 6.9 -5.9 62 62 A F H 3X S+ 0 0 94 -4,-2.9 4,-3.0 1,-0.3 5,-0.3 0.913 95.5 69.6 -47.0 -51.3 1.7 8.6 -3.1 63 63 A R H 3X S+ 0 0 187 -4,-1.6 4,-0.8 -5,-0.4 -1,-0.3 0.741 102.1 50.3 -40.7 -25.0 4.3 9.6 -5.7 64 64 A R H <> S+ 0 0 177 -3,-2.6 4,-1.7 -4,-0.4 3,-0.5 0.956 114.0 37.6 -80.3 -57.4 1.5 11.9 -6.9 65 65 A N H < S+ 0 0 64 -4,-1.0 -2,-0.2 1,-0.2 -3,-0.1 0.640 109.8 68.6 -69.4 -13.4 0.6 13.6 -3.6 66 66 A L H < S+ 0 0 89 -4,-3.0 -1,-0.2 -5,-0.3 -2,-0.2 0.911 107.2 34.0 -71.6 -43.9 4.2 13.5 -2.7 67 67 A L H < S+ 0 0 145 -4,-0.8 -2,-0.2 -3,-0.5 -1,-0.2 0.801 102.9 94.6 -80.7 -31.1 5.2 16.1 -5.3 68 68 A R S < S- 0 0 150 -4,-1.7 -3,-0.0 1,-0.1 -4,-0.0 -0.151 97.5 -98.4 -59.0 156.4 2.0 18.0 -5.0 69 69 A Q S S+ 0 0 178 2,-0.0 -1,-0.1 0, 0.0 -4,-0.0 0.902 99.6 96.3 -40.6 -56.6 1.9 21.0 -2.6 70 70 A E + 0 0 142 1,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.047 53.7 142.4 -39.8 131.5 0.3 18.8 0.1 71 71 A N - 0 0 112 2,-0.0 2,-0.1 4,-0.0 4,-0.1 -0.952 38.1-131.4-172.0 153.5 3.0 17.6 2.5 72 72 A G + 0 0 54 -2,-0.3 0, 0.0 2,-0.1 0, 0.0 -0.429 61.9 38.6-105.2-178.1 3.7 16.9 6.1 73 73 A G S S- 0 0 78 -2,-0.1 2,-0.6 1,-0.1 -2,-0.0 0.207 99.7 -55.1 63.2 167.8 6.6 17.8 8.5 74 74 A V S S+ 0 0 158 2,-0.0 2,-0.3 0, 0.0 -1,-0.1 -0.716 73.8 147.1 -85.0 118.2 8.4 21.1 8.6 75 75 A S + 0 0 112 -2,-0.6 -4,-0.0 -4,-0.1 -2,-0.0 -0.973 8.0 141.8-147.4 159.6 9.8 22.0 5.2 76 76 A G - 0 0 45 -2,-0.3 4,-0.1 2,-0.3 -2,-0.0 -0.903 63.3 -57.9-170.0-162.4 10.6 25.1 3.1 77 77 A P S S+ 0 0 139 0, 0.0 3,-0.2 0, 0.0 -1,-0.0 0.800 83.8 123.3 -69.7 -30.2 12.9 26.9 0.7 78 78 A S S S- 0 0 95 1,-0.2 -2,-0.3 2,-0.0 0, 0.0 -0.030 86.2 -87.7 -36.7 121.8 15.8 26.7 3.2 79 79 A S 0 0 135 1,-0.2 -1,-0.2 0, 0.0 0, 0.0 -0.081 360.0 360.0 -38.9 113.3 18.6 24.8 1.4 80 80 A G 0 0 122 -3,-0.2 -1,-0.2 -4,-0.1 -2,-0.0 0.040 360.0 360.0-150.6 360.0 17.9 21.2 2.1