==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 24-APR-06 2DMS . COMPND 2 MOLECULE: HOMEOBOX PROTEIN OTX2; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR S.OHNISHI,K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA, . 80 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7385.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 60.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 7.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 10.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 32 40.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 124 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 102.9 -20.3 -5.8 -25.4 2 2 A S - 0 0 120 1,-0.1 2,-0.6 2,-0.1 0, 0.0 -0.012 360.0-154.8 -37.5 131.4 -19.7 -6.6 -21.7 3 3 A S - 0 0 119 3,-0.0 2,-1.4 0, 0.0 3,-0.2 -0.801 61.8 -47.3-119.5 88.9 -18.9 -10.3 -21.4 4 4 A G + 0 0 63 -2,-0.6 3,-0.1 1,-0.2 -2,-0.1 -0.616 60.5 178.4 91.9 -79.2 -19.8 -11.5 -17.9 5 5 A S + 0 0 108 -2,-1.4 -1,-0.2 1,-0.2 2,-0.2 0.845 34.7 148.7 42.0 40.8 -18.3 -8.9 -15.7 6 6 A S + 0 0 119 -3,-0.2 -1,-0.2 2,-0.0 2,-0.1 -0.587 7.2 90.6-101.2 164.8 -19.8 -10.8 -12.8 7 7 A G - 0 0 65 -2,-0.2 2,-0.5 -3,-0.1 -3,-0.0 -0.115 59.1-113.6 122.9 139.6 -18.5 -11.2 -9.2 8 8 A R - 0 0 229 -2,-0.1 -2,-0.0 1,-0.0 2,-0.0 -0.908 27.3-141.2-108.7 126.5 -18.9 -9.5 -5.9 9 9 A R - 0 0 202 -2,-0.5 3,-0.1 1,-0.1 -2,-0.0 -0.249 2.7-143.8 -77.3 169.0 -16.0 -7.7 -4.3 10 10 A E - 0 0 139 1,-0.4 2,-0.3 -2,-0.0 -1,-0.1 0.875 68.7 -21.8 -98.0 -59.8 -15.2 -7.7 -0.6 11 11 A R - 0 0 161 1,-0.1 -1,-0.4 4,-0.0 3,-0.1 -0.993 37.4-165.5-154.5 153.1 -13.9 -4.2 0.2 12 12 A T S S+ 0 0 103 -2,-0.3 2,-0.3 1,-0.1 -1,-0.1 0.788 77.2 52.9-106.3 -46.0 -12.3 -1.2 -1.5 13 13 A T S S- 0 0 90 1,-0.1 2,-0.1 0, 0.0 -1,-0.1 -0.672 90.5-105.0 -95.4 149.5 -10.9 0.9 1.4 14 14 A F - 0 0 45 -2,-0.3 2,-0.3 -3,-0.1 -1,-0.1 -0.439 33.3-132.5 -72.4 143.4 -8.7 -0.4 4.1 15 15 A T >> - 0 0 59 -2,-0.1 4,-2.9 1,-0.1 3,-1.1 -0.706 24.1-108.4 -98.5 149.4 -10.2 -0.9 7.5 16 16 A R H 3> S+ 0 0 171 -2,-0.3 4,-2.8 1,-0.3 5,-0.2 0.840 124.1 51.8 -39.2 -42.5 -8.7 0.2 10.8 17 17 A A H 3> S+ 0 0 64 2,-0.2 4,-1.0 1,-0.2 -1,-0.3 0.897 112.3 44.4 -64.3 -41.6 -7.9 -3.4 11.5 18 18 A Q H <> S+ 0 0 14 -3,-1.1 4,-2.8 2,-0.2 -2,-0.2 0.912 116.9 45.5 -69.6 -43.9 -6.2 -3.8 8.1 19 19 A L H X>S+ 0 0 49 -4,-2.9 4,-3.1 2,-0.2 5,-0.6 0.976 103.8 60.5 -63.4 -57.7 -4.3 -0.5 8.5 20 20 A D H X5S+ 0 0 82 -4,-2.8 4,-1.2 -5,-0.3 -1,-0.2 0.834 116.2 36.6 -37.7 -42.6 -3.1 -1.0 12.1 21 21 A V H X5S+ 0 0 28 -4,-1.0 4,-1.9 -5,-0.2 5,-0.3 0.971 114.7 51.6 -77.1 -60.2 -1.3 -4.1 10.8 22 22 A L H X5S+ 0 0 0 -4,-2.8 4,-1.5 1,-0.3 3,-0.5 0.900 115.3 44.2 -42.3 -53.2 -0.2 -2.9 7.4 23 23 A E H X5S+ 0 0 71 -4,-3.1 4,-2.4 1,-0.2 5,-0.3 0.911 105.7 61.7 -60.7 -44.1 1.4 0.2 9.0 24 24 A A H X - 0 0 87 1,-0.1 4,-3.0 0, 0.0 5,-0.3 -0.526 32.3 -95.7-102.4 171.6 9.9 -10.3 2.4 34 34 A I H > S+ 0 0 71 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.878 125.6 53.4 -52.3 -41.3 7.6 -12.8 0.8 35 35 A F H > S+ 0 0 155 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.934 111.9 43.5 -60.6 -48.3 7.1 -14.5 4.2 36 36 A M H > S+ 0 0 62 2,-0.2 4,-2.1 1,-0.2 5,-0.2 0.956 114.6 48.6 -62.6 -52.5 6.1 -11.2 5.8 37 37 A R H X S+ 0 0 44 -4,-3.0 4,-2.4 1,-0.2 5,-0.2 0.903 112.3 50.2 -54.7 -44.4 3.8 -10.1 3.0 38 38 A E H X S+ 0 0 90 -4,-2.6 4,-1.3 -5,-0.3 -1,-0.2 0.931 108.5 52.8 -60.9 -47.7 2.2 -13.6 3.0 39 39 A E H >X S+ 0 0 139 -4,-2.3 4,-2.1 2,-0.2 3,-1.0 0.971 114.8 38.8 -51.8 -64.8 1.6 -13.5 6.7 40 40 A V H >X>S+ 0 0 10 -4,-2.1 4,-2.3 1,-0.3 3,-0.9 0.961 113.1 54.3 -51.0 -61.3 -0.2 -10.1 6.8 41 41 A A H 3<>S+ 0 0 10 -4,-2.4 5,-2.0 1,-0.3 -1,-0.3 0.746 116.1 42.9 -46.5 -24.3 -2.1 -10.7 3.6 42 42 A L H <<5S+ 0 0 125 -4,-1.3 -1,-0.3 -3,-1.0 -2,-0.3 0.735 118.4 43.5 -94.0 -28.2 -3.3 -13.9 5.3 43 43 A K H <<5S+ 0 0 137 -4,-2.1 -2,-0.2 -3,-0.9 -3,-0.2 0.963 117.1 41.0 -80.4 -60.3 -3.9 -12.3 8.7 44 44 A I T <5S- 0 0 14 -4,-2.3 -3,-0.2 -5,-0.1 -1,-0.2 0.537 113.8-119.3 -66.3 -4.1 -5.7 -9.1 7.7 45 45 A N T < + 0 0 117 -5,-0.6 -3,-0.2 1,-0.2 -4,-0.1 0.963 68.2 131.5 63.7 53.9 -7.5 -11.3 5.2 46 46 A L < - 0 0 13 -5,-2.0 2,-0.3 -6,-0.3 -1,-0.2 -0.959 63.7 -94.1-136.9 154.5 -6.3 -9.4 2.1 47 47 A P >> - 0 0 76 0, 0.0 4,-1.4 0, 0.0 3,-0.9 -0.487 34.0-121.4 -69.8 128.6 -4.7 -10.4 -1.3 48 48 A E H 3> S+ 0 0 79 1,-0.3 4,-2.0 -2,-0.3 5,-0.2 0.767 113.6 63.5 -38.2 -29.9 -0.9 -10.2 -1.3 49 49 A S H 3> S+ 0 0 72 2,-0.2 4,-2.7 1,-0.2 -1,-0.3 0.980 97.0 50.7 -61.8 -59.4 -1.4 -7.7 -4.1 50 50 A R H <> S+ 0 0 57 -3,-0.9 4,-2.8 1,-0.2 5,-0.3 0.874 109.9 53.6 -46.3 -43.5 -3.3 -5.1 -2.0 51 51 A V H X S+ 0 0 1 -4,-1.4 4,-1.8 1,-0.2 -1,-0.2 0.956 109.5 45.2 -57.9 -54.4 -0.4 -5.3 0.5 52 52 A Q H X S+ 0 0 96 -4,-2.0 4,-1.3 2,-0.2 -1,-0.2 0.873 116.7 48.6 -58.1 -38.6 2.3 -4.7 -2.1 53 53 A V H >X S+ 0 0 56 -4,-2.7 4,-2.9 2,-0.2 3,-1.7 0.997 105.7 52.2 -65.2 -67.1 0.2 -1.8 -3.5 54 54 A W H 3X S+ 0 0 20 -4,-2.8 4,-2.7 1,-0.3 5,-0.3 0.836 109.2 54.5 -37.2 -43.5 -0.7 0.0 -0.2 55 55 A F H 3X S+ 0 0 13 -4,-1.8 4,-2.3 -5,-0.3 -1,-0.3 0.895 114.7 38.9 -60.9 -41.4 3.0 0.0 0.5 56 56 A K H < S+ 0 0 108 -4,-2.7 3,-2.1 -5,-0.5 4,-0.4 0.976 115.8 43.0 -74.1 -59.3 1.7 5.0 0.7 59 59 A R H >< S+ 0 0 94 -4,-2.3 3,-2.8 -5,-0.3 4,-0.3 0.893 101.0 71.1 -54.0 -43.1 5.4 5.4 0.3 60 60 A A T >X S+ 0 0 54 -4,-2.8 3,-1.5 1,-0.3 4,-0.9 0.740 84.6 72.9 -46.4 -23.6 4.9 7.2 -3.0 61 61 A K H <> S+ 0 0 69 -3,-2.1 4,-1.7 1,-0.3 3,-0.3 0.876 71.7 81.5 -60.8 -38.7 3.5 10.0 -0.8 62 62 A C H <4 S+ 0 0 48 -3,-2.8 -1,-0.3 -4,-0.4 -2,-0.2 0.746 99.8 42.8 -38.7 -26.4 7.1 10.8 0.4 63 63 A R H <> S+ 0 0 175 -3,-1.5 4,-1.2 -4,-0.3 3,-0.4 0.864 105.7 57.7 -89.5 -43.3 7.2 12.7 -2.9 64 64 A Q H < S+ 0 0 150 -4,-0.9 2,-0.5 -3,-0.3 -2,-0.2 0.628 94.2 74.8 -62.9 -11.6 3.7 14.3 -2.8 65 65 A Q T < S- 0 0 133 -4,-1.7 -1,-0.3 1,-0.0 3,-0.2 -0.331 123.6 -95.5 -97.9 50.4 5.0 15.8 0.5 66 66 A Q T 4 - 0 0 184 -2,-0.5 -2,-0.2 -3,-0.4 -3,-0.1 0.869 50.8-138.6 37.6 51.7 7.2 18.4 -1.1 67 67 A Q < - 0 0 76 -4,-1.2 2,-1.7 -6,-0.2 -1,-0.2 -0.089 13.8-117.6 -40.6 123.5 10.1 16.0 -0.7 68 68 A Q S S+ 0 0 192 -3,-0.2 2,-0.3 2,-0.1 -1,-0.2 -0.505 75.0 108.7 -71.1 87.4 13.1 18.1 0.3 69 69 A Q - 0 0 120 -2,-1.7 2,-0.6 -3,-0.1 -2,-0.0 -0.851 60.8-136.1-166.2 126.0 15.4 17.4 -2.6 70 70 A Q + 0 0 161 -2,-0.3 3,-0.1 1,-0.2 -2,-0.1 -0.762 39.9 145.5 -89.4 118.4 16.6 19.5 -5.6 71 71 A N - 0 0 132 -2,-0.6 -1,-0.2 1,-0.1 2,-0.1 0.719 61.8 -93.1-116.0 -48.7 16.4 17.7 -8.9 72 72 A G - 0 0 59 2,-0.0 2,-0.2 0, 0.0 -1,-0.1 -0.498 47.8-100.6 170.3 -93.5 15.5 20.3 -11.5 73 73 A G - 0 0 74 -2,-0.1 2,-0.3 -3,-0.1 -3,-0.0 -0.787 22.6-160.6 153.7 163.4 12.0 21.0 -12.7 74 74 A Q - 0 0 193 -2,-0.2 2,-0.2 2,-0.0 -2,-0.0 -0.950 21.5-115.2-169.1 149.2 9.4 20.5 -15.4 75 75 A S - 0 0 103 -2,-0.3 -2,-0.0 1,-0.0 0, 0.0 -0.499 17.2-162.3 -88.4 159.1 6.2 22.1 -16.8 76 76 A G - 0 0 71 -2,-0.2 -2,-0.0 2,-0.0 -1,-0.0 -0.619 13.2-179.5-145.9 82.6 2.8 20.4 -16.7 77 77 A P - 0 0 116 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.033 22.0-117.7 -69.8-177.0 0.2 21.9 -19.1 78 78 A S - 0 0 127 0, 0.0 2,-0.2 0, 0.0 -2,-0.0 -0.832 15.7-136.7-125.1 163.3 -3.4 20.7 -19.5 79 79 A S 0 0 118 -2,-0.3 0, 0.0 1,-0.1 0, 0.0 -0.535 360.0 360.0-111.1 178.8 -5.5 19.2 -22.3 80 80 A G 0 0 125 -2,-0.2 -1,-0.1 0, 0.0 0, 0.0 -0.287 360.0 360.0-129.0 360.0 -9.0 19.8 -23.6