==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 24-APR-06 2DMU . COMPND 2 MOLECULE: HOMEOBOX PROTEIN GOOSECOID; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.OHNISHI,M.SATO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA, . 70 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6228.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 46 65.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 11.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 34 48.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 116 0, 0.0 3,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -70.4 9.4 -7.1 -10.7 2 2 A S + 0 0 121 1,-0.1 2,-0.4 2,-0.1 0, 0.0 0.891 360.0 17.2 -36.9 -61.3 11.7 -4.8 -8.6 3 3 A S S > S- 0 0 79 1,-0.0 2,-2.2 0, 0.0 3,-0.7 -0.929 78.5-122.7-120.5 143.0 10.0 -1.7 -9.9 4 4 A G T 3 S+ 0 0 74 -2,-0.4 5,-0.2 1,-0.2 -2,-0.1 -0.231 80.2 109.7 -77.0 51.6 6.6 -1.4 -11.6 5 5 A S T 3 S+ 0 0 102 -2,-2.2 -1,-0.2 3,-0.1 -3,-0.0 0.872 81.8 32.8 -91.3 -46.5 8.2 0.3 -14.6 6 6 A S S < S+ 0 0 119 -3,-0.7 2,-0.2 2,-0.0 -2,-0.1 0.957 120.7 47.9 -75.4 -54.1 7.8 -2.5 -17.2 7 7 A G S S- 0 0 48 -4,-0.4 2,-0.4 1,-0.0 0, 0.0 -0.488 76.5-138.5 -88.5 160.1 4.5 -3.9 -15.9 8 8 A R - 0 0 237 -2,-0.2 2,-0.4 0, 0.0 -3,-0.1 -0.927 9.4-159.4-121.1 144.3 1.4 -2.0 -15.0 9 9 A R - 0 0 169 -2,-0.4 2,-0.1 -5,-0.2 -5,-0.0 -0.982 15.4-131.6-126.2 131.6 -1.0 -2.5 -12.1 10 10 A H - 0 0 187 -2,-0.4 2,-0.3 1,-0.1 0, 0.0 -0.349 22.1-126.5 -76.0 158.7 -4.6 -1.2 -11.8 11 11 A R - 0 0 215 -2,-0.1 2,-0.3 42,-0.0 -1,-0.1 -0.714 20.0-162.1-106.5 157.9 -5.9 0.6 -8.8 12 12 A T - 0 0 86 -2,-0.3 2,-0.2 38,-0.1 0, 0.0 -0.961 21.1-109.2-138.4 155.4 -9.0 -0.1 -6.6 13 13 A I - 0 0 152 -2,-0.3 2,-0.3 1,-0.0 0, 0.0 -0.525 32.4-164.7 -83.8 150.9 -11.1 1.8 -4.1 14 14 A F - 0 0 36 -2,-0.2 2,-0.1 3,-0.0 -1,-0.0 -0.886 20.2-104.7-132.7 163.4 -11.0 1.0 -0.4 15 15 A T > - 0 0 72 -2,-0.3 4,-3.0 29,-0.2 5,-0.3 -0.476 36.8-105.0 -86.3 159.0 -13.2 1.8 2.7 16 16 A D H > S+ 0 0 133 1,-0.2 4,-3.0 2,-0.2 5,-0.1 0.900 123.1 48.2 -46.4 -48.7 -12.3 4.3 5.4 17 17 A E H > S+ 0 0 125 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.958 111.3 48.5 -58.5 -54.3 -11.4 1.4 7.7 18 18 A Q H > S+ 0 0 29 1,-0.2 4,-2.1 2,-0.2 -2,-0.2 0.915 114.8 46.1 -52.7 -47.6 -9.2 -0.3 5.1 19 19 A L H X S+ 0 0 56 -4,-3.0 4,-3.2 2,-0.2 5,-0.4 0.927 107.7 57.8 -62.4 -46.6 -7.4 2.9 4.3 20 20 A E H X S+ 0 0 121 -4,-3.0 4,-2.7 -5,-0.3 -2,-0.2 0.947 109.3 43.6 -48.1 -60.1 -6.9 3.8 7.9 21 21 A A H X S+ 0 0 18 -4,-2.2 4,-1.9 2,-0.2 5,-0.2 0.949 114.5 49.8 -51.6 -56.7 -5.0 0.6 8.7 22 22 A L H >X S+ 0 0 0 -4,-2.1 4,-3.2 1,-0.3 3,-0.7 0.936 115.2 42.8 -48.4 -55.9 -2.9 0.9 5.5 23 23 A E H 3X S+ 0 0 80 -4,-3.2 4,-1.6 1,-0.3 -1,-0.3 0.832 110.6 58.0 -61.3 -32.8 -2.0 4.5 6.2 24 24 A N H 3X S+ 0 0 89 -4,-2.7 4,-0.8 -5,-0.4 -1,-0.3 0.798 114.4 37.5 -67.9 -28.7 -1.5 3.6 9.9 25 25 A L H - 0 0 107 1,-0.1 4,-3.1 0, 0.0 5,-0.3 -0.771 26.7-112.6-108.4 153.7 7.0 -7.3 7.1 34 34 A V H > S+ 0 0 87 -2,-0.3 4,-2.3 1,-0.2 5,-0.2 0.852 120.4 50.0 -49.0 -38.3 5.5 -10.4 5.4 35 35 A G H > S+ 0 0 40 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.911 112.2 44.9 -69.0 -43.3 3.9 -11.3 8.8 36 36 A T H > S+ 0 0 57 -3,-0.2 4,-2.9 2,-0.2 -2,-0.2 0.883 115.0 49.1 -68.0 -39.4 2.4 -7.8 9.3 37 37 A R H X S+ 0 0 52 -4,-3.1 4,-3.0 2,-0.2 -2,-0.2 0.965 109.8 49.4 -64.5 -54.6 1.2 -7.6 5.8 38 38 A E H X S+ 0 0 122 -4,-2.3 4,-1.6 -5,-0.3 -2,-0.2 0.913 117.8 41.7 -51.1 -48.0 -0.5 -11.0 5.7 39 39 A Q H X S+ 0 0 154 -4,-1.8 4,-2.4 -5,-0.2 5,-0.2 0.977 112.6 51.5 -64.9 -57.8 -2.3 -10.2 9.0 40 40 A L H X S+ 0 0 25 -4,-2.9 4,-2.4 1,-0.2 5,-0.2 0.885 106.8 57.9 -46.3 -45.6 -3.2 -6.6 8.2 41 41 A A H >X>S+ 0 0 2 -4,-3.0 5,-2.6 1,-0.2 3,-0.8 0.965 109.2 40.6 -49.8 -65.7 -4.7 -7.9 4.9 42 42 A R H ><5S+ 0 0 211 -4,-1.6 3,-0.5 1,-0.3 -1,-0.2 0.824 113.4 58.1 -54.4 -32.5 -7.2 -10.3 6.5 43 43 A K H 3<5S+ 0 0 155 -4,-2.4 -1,-0.3 1,-0.2 -2,-0.2 0.880 114.6 34.8 -66.0 -38.9 -7.8 -7.6 9.2 44 44 A V H <<5S- 0 0 5 -4,-2.4 -1,-0.2 -3,-0.8 -2,-0.2 0.282 117.7-111.6 -97.7 8.7 -8.9 -5.1 6.5 45 45 A H T <<5S+ 0 0 157 -4,-0.6 2,-0.3 -3,-0.5 -3,-0.3 0.925 78.2 121.3 61.8 46.3 -10.5 -7.8 4.4 46 46 A L < - 0 0 31 -5,-2.6 2,-0.5 -6,-0.2 -1,-0.2 -0.862 67.2 -99.4-134.2 168.5 -7.9 -7.5 1.7 47 47 A R >> - 0 0 192 -2,-0.3 4,-2.2 1,-0.1 3,-0.7 -0.778 28.5-126.2 -94.2 130.2 -5.3 -9.7 -0.1 48 48 A E H 3> S+ 0 0 48 -2,-0.5 4,-2.3 1,-0.3 5,-0.2 0.868 111.9 54.5 -34.9 -56.8 -1.7 -9.4 1.0 49 49 A E H 3> S+ 0 0 123 1,-0.2 4,-1.8 2,-0.2 -1,-0.3 0.921 108.9 47.5 -45.7 -54.7 -0.7 -8.7 -2.6 50 50 A K H <> S+ 0 0 75 -3,-0.7 4,-2.1 1,-0.2 -1,-0.2 0.926 107.7 56.4 -54.4 -48.9 -3.1 -5.8 -2.8 51 51 A V H X S+ 0 0 1 -4,-2.2 4,-1.4 1,-0.2 -1,-0.2 0.921 105.8 50.4 -49.4 -51.1 -1.9 -4.4 0.5 52 52 A E H X S+ 0 0 76 -4,-2.3 4,-1.6 -5,-0.2 -1,-0.2 0.892 107.4 55.8 -55.8 -42.3 1.6 -4.2 -0.8 53 53 A V H >X S+ 0 0 22 -4,-1.8 4,-2.0 -5,-0.2 3,-0.7 0.965 99.7 56.9 -55.1 -58.7 0.4 -2.4 -3.9 54 54 A W H 3X S+ 0 0 25 -4,-2.1 4,-2.2 1,-0.3 -1,-0.2 0.862 105.2 54.2 -40.5 -45.9 -1.3 0.4 -2.0 55 55 A F H 3X S+ 0 0 10 -4,-1.4 4,-2.2 1,-0.2 -1,-0.3 0.932 104.8 52.5 -56.7 -48.9 2.0 1.1 -0.3 56 56 A K H X S+ 0 0 99 -4,-2.2 4,-2.0 1,-0.2 3,-1.0 0.933 104.8 56.2 -52.3 -51.7 1.6 6.2 -1.6 59 59 A R H 3X S+ 0 0 77 -4,-2.2 4,-1.9 1,-0.3 5,-0.3 0.884 94.7 69.0 -48.5 -44.0 5.3 6.4 -2.2 60 60 A A H 3X S+ 0 0 33 -4,-1.5 4,-2.4 -3,-0.3 -1,-0.3 0.891 108.9 34.7 -41.5 -52.1 4.7 7.8 -5.6 61 61 A K H S+ 0 0 100 -3,-1.0 4,-2.6 -4,-0.9 5,-0.8 0.966 106.7 65.8 -69.9 -55.0 3.4 11.0 -4.1 62 62 A W H <5S+ 0 0 120 -4,-2.0 4,-0.4 1,-0.3 6,-0.3 0.771 115.6 34.7 -37.7 -31.0 5.7 11.0 -1.1 63 63 A R H <5S+ 0 0 106 -4,-1.9 6,-1.0 -3,-0.2 -1,-0.3 0.877 116.8 51.0 -92.2 -48.6 8.4 11.5 -3.8 64 64 A R H <5S+ 0 0 187 -4,-2.4 -2,-0.2 -5,-0.3 -3,-0.2 0.950 119.9 36.1 -54.2 -54.6 6.5 13.7 -6.3 65 65 A S T <5S+ 0 0 86 -4,-2.6 -1,-0.2 -5,-0.1 -3,-0.2 0.914 110.1 76.7 -66.7 -44.2 5.3 16.2 -3.7 66 66 A G S >