==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 24-APR-06 2DMY . COMPND 2 MOLECULE: SPERMATID PERINUCLEAR RNA-BINDING PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.KADIRVEL,F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA, . 97 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7726.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 49.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 15.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 8.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 21 21.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 127 0, 0.0 3,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-146.6 16.2 6.8 2.2 2 2 A S + 0 0 115 3,-0.0 2,-0.2 1,-0.0 3,-0.1 0.778 360.0 77.0-107.3 -45.5 15.6 5.0 -1.1 3 3 A S S S+ 0 0 124 1,-0.2 -1,-0.0 2,-0.0 0, 0.0 -0.485 91.3 33.5 -71.7 135.1 19.1 3.9 -2.2 4 4 A G S S+ 0 0 77 -2,-0.2 2,-0.3 1,-0.2 -1,-0.2 0.959 76.8 159.9 85.0 66.5 20.5 0.9 -0.4 5 5 A S - 0 0 98 1,-0.1 -1,-0.2 -3,-0.1 -3,-0.0 -0.911 37.8-149.6-122.2 148.9 17.5 -1.4 0.3 6 6 A S - 0 0 132 -2,-0.3 -1,-0.1 2,-0.0 -2,-0.0 0.957 35.1-137.0 -78.4 -56.1 17.4 -5.1 1.2 7 7 A G - 0 0 67 1,-0.1 2,-0.7 0, 0.0 -2,-0.0 0.770 5.5-140.3 94.9 96.5 14.0 -5.9 -0.3 8 8 A R - 0 0 222 2,-0.0 2,-0.9 1,-0.0 -1,-0.1 -0.788 13.2-165.7 -91.9 115.6 11.6 -8.2 1.7 9 9 A K + 0 0 199 -2,-0.7 2,-0.4 2,-0.0 -1,-0.0 -0.809 21.9 158.6-104.1 94.3 9.8 -10.6 -0.6 10 10 A I + 0 0 112 -2,-0.9 2,-0.3 2,-0.0 -2,-0.0 -0.963 5.4 161.5-120.8 131.5 6.9 -12.1 1.4 11 11 A L + 0 0 135 -2,-0.4 2,-0.3 2,-0.0 -2,-0.0 -0.990 2.7 160.8-149.7 138.3 3.8 -13.7 -0.1 12 12 A D - 0 0 104 -2,-0.3 3,-0.3 7,-0.0 7,-0.0 -0.912 25.0-161.6-160.9 129.6 1.1 -16.0 1.3 13 13 A S + 0 0 86 -2,-0.3 4,-0.1 1,-0.2 7,-0.0 -0.287 44.7 135.3-106.3 46.0 -2.5 -16.9 0.1 14 14 A K + 0 0 185 2,-0.1 -1,-0.2 -2,-0.0 0, 0.0 0.830 60.6 70.2 -61.6 -32.5 -3.6 -18.4 3.4 15 15 A A S S- 0 0 47 -3,-0.3 2,-0.5 1,-0.0 -2,-0.0 -0.034 89.3-112.4 -75.1-176.2 -6.9 -16.5 3.1 16 16 A I S S- 0 0 149 1,-0.1 -2,-0.1 3,-0.0 -1,-0.0 -0.927 83.7 -28.2-128.2 108.1 -9.6 -17.2 0.6 17 17 A D S S+ 0 0 126 -2,-0.5 -1,-0.1 -4,-0.1 4,-0.1 0.823 118.3 95.9 58.7 31.9 -10.3 -14.7 -2.2 18 18 A L > + 0 0 72 2,-0.1 3,-2.1 -5,-0.0 4,-0.4 0.751 64.9 60.5-113.5 -56.7 -9.0 -11.9 0.1 19 19 A M T 3> S+ 0 0 40 1,-0.3 4,-2.2 2,-0.2 5,-0.3 0.724 82.4 93.4 -47.3 -21.3 -5.3 -11.3 -0.7 20 20 A N H 3> S+ 0 0 54 1,-0.3 4,-1.9 2,-0.2 -1,-0.3 0.864 84.1 49.2 -40.1 -46.8 -6.7 -10.4 -4.1 21 21 A A H <> S+ 0 0 6 -3,-2.1 4,-2.7 2,-0.2 5,-0.3 0.952 105.7 55.3 -60.4 -52.5 -6.8 -6.8 -2.9 22 22 A L H > S+ 0 0 37 -4,-0.4 4,-1.4 1,-0.3 -2,-0.2 0.910 110.5 45.8 -46.9 -50.4 -3.2 -6.9 -1.6 23 23 A M H X S+ 0 0 76 -4,-2.2 4,-1.9 1,-0.2 -1,-0.3 0.879 111.5 54.0 -62.1 -39.0 -2.0 -8.0 -5.0 24 24 A R H >X S+ 0 0 126 -4,-1.9 4,-2.4 -5,-0.3 3,-0.5 0.973 102.7 54.0 -59.9 -57.9 -4.1 -5.4 -6.7 25 25 A L H 3X S+ 0 0 0 -4,-2.7 4,-2.2 1,-0.3 -1,-0.2 0.855 113.5 45.1 -45.0 -40.7 -2.8 -2.4 -4.7 26 26 A N H 3< S+ 0 0 63 -4,-1.4 -1,-0.3 -5,-0.3 -2,-0.2 0.838 108.4 57.6 -73.9 -34.0 0.7 -3.5 -5.8 27 27 A Q H << S+ 0 0 142 -4,-1.9 -2,-0.2 -3,-0.5 -1,-0.2 0.938 117.1 32.2 -61.7 -48.9 -0.4 -4.0 -9.4 28 28 A I H < S+ 0 0 69 -4,-2.4 -2,-0.2 1,-0.3 -1,-0.2 0.874 136.0 27.6 -76.3 -39.3 -1.6 -0.4 -9.8 29 29 A R S < S- 0 0 120 -4,-2.2 -1,-0.3 -5,-0.4 -2,-0.2 -0.778 81.6-164.0-128.5 87.8 1.0 1.0 -7.5 30 30 A P + 0 0 105 0, 0.0 -3,-0.1 0, 0.0 -4,-0.1 -0.346 67.1 34.0 -69.7 149.0 4.2 -1.1 -7.4 31 31 A G S S+ 0 0 82 1,-0.1 2,-0.2 -2,-0.1 -5,-0.0 0.989 79.0 170.7 70.7 62.2 6.7 -0.7 -4.6 32 32 A L - 0 0 42 -3,-0.1 2,-0.4 20,-0.0 -1,-0.1 -0.591 23.2-144.6-101.7 165.2 4.5 0.2 -1.7 33 33 A Q - 0 0 163 -2,-0.2 20,-0.4 20,-0.2 2,-0.4 -0.992 8.3-163.5-135.3 128.4 5.3 0.5 2.0 34 34 A Y - 0 0 47 -2,-0.4 2,-0.3 18,-0.1 18,-0.2 -0.910 8.0-174.4-113.8 137.5 3.1 -0.5 5.0 35 35 A K E -A 51 0A 143 16,-1.7 16,-1.2 -2,-0.4 2,-0.9 -0.947 25.6-126.0-130.1 150.6 3.6 0.7 8.6 36 36 A L E -A 50 0A 38 -2,-0.3 14,-0.3 14,-0.2 3,-0.1 -0.814 15.5-166.6 -99.3 100.3 1.9 -0.2 11.9 37 37 A L E - 0 0 106 12,-1.3 2,-0.3 -2,-0.9 -1,-0.2 0.916 67.4 -40.8 -48.0 -51.0 0.8 3.0 13.5 38 38 A S E -A 49 0A 78 11,-0.7 11,-1.5 -3,-0.1 2,-0.4 -0.961 50.3-129.9-174.1 160.0 0.2 1.2 16.8 39 39 A Q E +A 48 0A 78 -2,-0.3 2,-0.3 9,-0.2 9,-0.2 -0.986 27.5 168.2-127.5 131.1 -1.2 -2.1 18.3 40 40 A S E +A 47 0A 87 7,-0.9 7,-2.2 -2,-0.4 -2,-0.0 -0.891 32.2 50.4-135.6 165.5 -3.7 -2.4 21.2 41 41 A G S S- 0 0 49 -2,-0.3 -2,-0.0 5,-0.2 6,-0.0 -0.497 86.4 -32.5 103.6-174.9 -5.8 -5.1 22.8 42 42 A P - 0 0 63 0, 0.0 5,-0.1 0, 0.0 -2,-0.0 0.053 58.1-106.3 -69.8-175.5 -5.1 -8.6 24.2 43 43 A V S S+ 0 0 141 2,-0.1 -3,-0.0 1,-0.1 -2,-0.0 0.750 120.5 39.8 -86.2 -27.1 -2.5 -11.0 22.9 44 44 A H S S+ 0 0 160 1,-0.2 -1,-0.1 0, 0.0 -3,-0.0 0.712 126.8 34.8 -92.3 -25.2 -5.2 -13.3 21.3 45 45 A A S S+ 0 0 46 2,-0.0 -1,-0.2 20,-0.0 -2,-0.1 -0.339 84.5 162.0-125.4 50.5 -7.3 -10.4 20.0 46 46 A P - 0 0 20 0, 0.0 2,-0.6 0, 0.0 -5,-0.2 -0.290 35.4-131.8 -69.8 155.1 -4.7 -7.8 19.1 47 47 A V E -A 40 0A 55 -7,-2.2 2,-1.0 -5,-0.1 -7,-0.9 -0.888 15.0-163.2-115.0 102.3 -5.4 -4.9 16.8 48 48 A F E -AB 39 63A 48 15,-1.9 15,-1.1 -2,-0.6 2,-0.9 -0.725 7.3-162.6 -87.3 101.7 -2.9 -4.3 14.1 49 49 A T E -AB 38 62A 35 -11,-1.5 -12,-1.3 -2,-1.0 -11,-0.7 -0.755 12.8-174.7 -89.2 107.2 -3.4 -0.8 12.7 50 50 A M E -AB 36 61A 8 11,-1.6 11,-0.9 -2,-0.9 2,-0.3 -0.512 5.9-163.9 -96.9 167.3 -1.7 -0.5 9.4 51 51 A S E +AB 35 60A 17 -16,-1.2 -16,-1.7 9,-0.2 2,-0.3 -0.989 7.4 179.6-153.7 142.9 -1.3 2.6 7.2 52 52 A V E - B 0 59A 5 7,-2.2 7,-2.9 -2,-0.3 2,-0.6 -0.987 22.0-133.8-144.6 152.6 -0.4 3.4 3.6 53 53 A D E + B 0 58A 99 -20,-0.4 2,-0.4 -2,-0.3 5,-0.2 -0.932 32.2 161.6-112.8 116.9 0.1 6.4 1.3 54 54 A V E > - B 0 57A 3 3,-2.9 3,-2.1 -2,-0.6 -2,-0.1 -0.996 66.3 -9.4-137.8 132.1 -1.5 6.3 -2.1 55 55 A D T 3 S- 0 0 110 -2,-0.4 -1,-0.1 1,-0.3 3,-0.1 0.912 127.5 -56.0 50.1 48.3 -2.4 9.2 -4.5 56 56 A G T 3 S+ 0 0 77 1,-0.2 2,-0.5 -3,-0.1 -1,-0.3 0.685 119.6 116.1 59.8 16.6 -1.6 11.7 -1.8 57 57 A T E < -B 54 0A 56 -3,-2.1 -3,-2.9 2,-0.0 2,-0.5 -0.967 56.6-149.9-123.2 119.8 -4.2 9.9 0.3 58 58 A T E -B 53 0A 74 -2,-0.5 2,-0.4 -5,-0.2 -5,-0.2 -0.759 14.1-164.4 -90.5 124.6 -3.2 8.1 3.5 59 59 A Y E -B 52 0A 29 -7,-2.9 -7,-2.2 -2,-0.5 2,-0.4 -0.894 5.9-171.9-111.7 138.5 -5.4 5.1 4.4 60 60 A E E +B 51 0A 93 -2,-0.4 2,-0.4 -9,-0.2 -9,-0.2 -0.978 8.9 168.6-133.5 121.4 -5.5 3.4 7.8 61 61 A A E -B 50 0A 12 -11,-0.9 -11,-1.6 -2,-0.4 12,-0.3 -0.991 18.2-151.1-136.0 127.8 -7.3 0.1 8.5 62 62 A S E +B 49 0A 67 -2,-0.4 -13,-0.2 -13,-0.2 -15,-0.1 -0.699 21.8 168.7 -97.2 148.5 -7.1 -2.0 11.7 63 63 A G E -B 48 0A 10 -15,-1.1 -15,-1.9 -2,-0.3 3,-0.1 -0.877 50.6 -92.5-147.2 178.9 -7.6 -5.8 11.8 64 64 A P S S+ 0 0 77 0, 0.0 2,-0.3 0, 0.0 3,-0.1 0.685 110.9 17.9 -69.8 -18.5 -7.2 -9.0 13.9 65 65 A S S >> S- 0 0 33 -17,-0.2 4,-2.8 1,-0.1 3,-0.7 -0.990 79.9-113.0-155.0 145.5 -3.8 -9.5 12.4 66 66 A K H 3> S+ 0 0 100 -2,-0.3 4,-2.4 1,-0.3 5,-0.3 0.870 117.8 58.1 -43.2 -44.9 -1.1 -7.5 10.5 67 67 A K H 3> S+ 0 0 141 1,-0.2 4,-1.4 2,-0.2 -1,-0.3 0.932 111.8 38.9 -52.9 -51.1 -1.8 -9.7 7.5 68 68 A T H <> S+ 0 0 27 -3,-0.7 4,-3.2 2,-0.2 -1,-0.2 0.842 110.5 62.6 -69.3 -34.2 -5.5 -8.7 7.5 69 69 A A H X S+ 0 0 0 -4,-2.8 4,-2.3 1,-0.2 -2,-0.2 0.964 105.1 43.6 -55.0 -58.1 -4.6 -5.1 8.4 70 70 A K H X S+ 0 0 69 -4,-2.4 4,-1.8 1,-0.2 -1,-0.2 0.878 114.9 51.9 -56.0 -39.9 -2.6 -4.4 5.2 71 71 A L H X S+ 0 0 15 -4,-1.4 4,-2.1 -5,-0.3 -1,-0.2 0.945 108.1 49.5 -62.9 -49.8 -5.3 -6.1 3.2 72 72 A H H X S+ 0 0 76 -4,-3.2 4,-1.5 1,-0.2 -2,-0.2 0.900 107.7 55.7 -56.4 -43.4 -8.1 -4.0 4.7 73 73 A V H X S+ 0 0 0 -4,-2.3 4,-1.8 -12,-0.3 3,-0.3 0.928 106.7 49.6 -55.8 -48.8 -6.2 -0.9 4.0 74 74 A A H X S+ 0 0 0 -4,-1.8 4,-2.2 1,-0.2 5,-0.3 0.949 102.2 60.7 -56.0 -53.4 -5.9 -1.7 0.3 75 75 A V H X S+ 0 0 20 -4,-2.1 4,-2.4 1,-0.2 -1,-0.2 0.862 106.6 48.7 -41.9 -44.6 -9.6 -2.4 -0.1 76 76 A K H X S+ 0 0 88 -4,-1.5 4,-2.5 -3,-0.3 -1,-0.2 0.973 106.1 54.5 -62.3 -56.9 -10.2 1.2 1.0 77 77 A V H X S+ 0 0 0 -4,-1.8 4,-1.6 1,-0.2 -2,-0.2 0.902 112.7 44.1 -42.8 -53.4 -7.7 2.7 -1.4 78 78 A L H X>S+ 0 0 4 -4,-2.2 5,-2.4 1,-0.2 4,-2.2 0.943 110.0 54.5 -59.4 -50.4 -9.4 1.0 -4.4 79 79 A Q H <5S+ 0 0 105 -4,-2.4 -1,-0.2 -5,-0.3 -2,-0.2 0.845 105.8 55.2 -52.6 -36.0 -12.9 1.8 -3.1 80 80 A A H <5S+ 0 0 64 -4,-2.5 -1,-0.3 1,-0.2 -2,-0.2 0.903 111.5 41.6 -65.1 -42.5 -11.8 5.5 -3.1 81 81 A M H <5S- 0 0 79 -4,-1.6 -2,-0.2 -3,-0.4 -1,-0.2 0.724 122.0-107.6 -77.1 -22.4 -10.7 5.4 -6.7 82 82 A G T <5 + 0 0 63 -4,-2.2 -3,-0.2 1,-0.3 -2,-0.1 0.744 67.4 147.5 100.1 30.2 -13.8 3.3 -7.6 83 83 A Y < - 0 0 125 -5,-2.4 2,-0.4 -8,-0.1 -1,-0.3 -0.689 55.6 -97.3 -99.5 151.9 -12.2 -0.0 -8.3 84 84 A P + 0 0 112 0, 0.0 -1,-0.1 0, 0.0 -5,-0.0 -0.518 48.5 158.4 -69.8 119.9 -13.8 -3.5 -7.6 85 85 A T - 0 0 36 -2,-0.4 -64,-0.1 2,-0.2 -10,-0.1 0.751 56.9-103.1-109.3 -41.8 -12.6 -4.9 -4.2 86 86 A G S S+ 0 0 57 1,-0.3 2,-0.3 -11,-0.1 -65,-0.0 0.748 79.6 96.0 115.4 52.1 -15.3 -7.4 -3.4 87 87 A F + 0 0 119 -12,-0.1 -1,-0.3 0, 0.0 2,-0.3 -0.925 32.6 143.0-167.4 140.3 -17.6 -5.9 -0.7 88 88 A D + 0 0 137 -2,-0.3 0, 0.0 1,-0.1 0, 0.0 -0.968 49.4 54.0-166.3 175.3 -21.0 -4.1 -0.6 89 89 A A S S+ 0 0 102 -2,-0.3 -1,-0.1 1,-0.1 0, 0.0 0.875 71.2 124.3 54.6 40.0 -24.2 -3.7 1.4 90 90 A D - 0 0 110 -3,-0.1 -1,-0.1 0, 0.0 0, 0.0 -0.311 45.3-167.6-124.1 48.2 -22.1 -3.0 4.5 91 91 A I - 0 0 165 1,-0.1 -3,-0.0 3,-0.0 0, 0.0 0.057 13.1-152.6 -35.9 142.2 -23.5 0.4 5.5 92 92 A S - 0 0 121 1,-0.3 -1,-0.1 3,-0.1 4,-0.1 0.801 41.6-113.9 -91.6 -35.3 -21.4 2.1 8.2 93 93 A G - 0 0 43 1,-0.1 -1,-0.3 0, 0.0 0, 0.0 -0.942 57.4 -27.3 137.3-159.1 -24.2 4.2 9.8 94 94 A P S S+ 0 0 154 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 0.573 119.8 73.1 -69.7 -8.7 -25.2 7.8 10.2 95 95 A S - 0 0 96 -3,-0.0 2,-0.3 0, 0.0 -3,-0.1 -0.917 64.4-173.3-113.0 134.1 -21.5 8.7 10.0 96 96 A S 0 0 107 -2,-0.4 0, 0.0 1,-0.3 0, 0.0 -0.825 360.0 360.0-122.3 161.6 -19.5 8.6 6.8 97 97 A G 0 0 125 -2,-0.3 -1,-0.3 0, 0.0 0, 0.0 0.479 360.0 360.0 -64.3 360.0 -15.8 9.1 5.9