==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT 01-JUL-08 3DMI . COMPND 2 MOLECULE: CYTOCHROME C6; . SOURCE 2 ORGANISM_SCIENTIFIC: PHAEODACTYLUM TRICORNUTUM; . AUTHOR H.AKAZAKI,F.KAWAI,M.HOSOKAWA,T.HAMA,T.HIRANO,B.-K.LIM, . 87 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4981.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 66.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 39 44.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 1 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 46 A G 0 0 85 0, 0.0 2,-0.8 0, 0.0 73,-0.1 0.000 360.0 360.0 360.0 178.0 6.7 83.3 33.3 2 47 A D > - 0 0 89 1,-0.1 4,-2.4 2,-0.0 76,-0.2 -0.865 360.0-174.0 -98.9 102.8 6.6 84.7 29.8 3 48 A V H > S+ 0 0 70 -2,-0.8 4,-2.2 2,-0.2 -1,-0.1 0.669 82.1 60.0 -74.5 -16.3 5.1 82.1 27.6 4 49 A G H > S+ 0 0 30 2,-0.2 4,-1.8 3,-0.1 -1,-0.2 0.951 111.4 38.6 -71.4 -52.7 5.7 84.1 24.4 5 50 A A H > S+ 0 0 23 1,-0.2 4,-2.5 2,-0.2 -2,-0.2 0.906 115.5 57.1 -58.5 -42.3 9.5 84.0 25.1 6 51 A G H X S+ 0 0 0 -4,-2.4 4,-2.6 68,-0.2 -2,-0.2 0.891 104.3 50.2 -57.4 -43.9 8.9 80.4 26.2 7 52 A E H X S+ 0 0 91 -4,-2.2 4,-2.9 2,-0.2 -1,-0.2 0.904 110.4 50.0 -62.7 -41.5 7.4 79.4 22.9 8 53 A Q H X S+ 0 0 142 -4,-1.8 4,-1.9 2,-0.2 -2,-0.2 0.926 112.2 47.0 -62.6 -45.8 10.3 80.9 21.0 9 54 A I H X S+ 0 0 19 -4,-2.5 4,-2.0 2,-0.2 5,-0.3 0.909 112.5 51.6 -60.6 -41.8 12.9 79.1 23.2 10 55 A F H X>S+ 0 0 6 -4,-2.6 4,-2.8 1,-0.2 5,-2.1 0.940 108.6 49.3 -62.0 -47.6 10.9 75.9 22.8 11 56 A N H <5S+ 0 0 100 -4,-2.9 -1,-0.2 1,-0.2 -2,-0.2 0.867 117.2 42.1 -61.1 -34.7 10.8 76.2 19.0 12 57 A A H <5S+ 0 0 82 -4,-1.9 -1,-0.2 -5,-0.2 -2,-0.2 0.746 132.4 16.4 -82.6 -25.8 14.6 76.8 18.9 13 58 A N H <5S+ 0 0 46 -4,-2.0 -3,-0.2 -3,-0.2 -2,-0.2 0.578 130.7 27.9-125.5 -17.6 15.7 74.2 21.5 14 59 A C T >X5S+ 0 0 19 -4,-2.8 4,-2.1 -5,-0.3 3,-1.0 0.668 92.2 79.6-125.6 -29.9 13.0 71.6 22.2 15 60 A A H 3>< S+ 0 0 24 -4,-2.1 3,-2.2 5,-0.2 -3,-0.2 0.052 72.7 158.3-127.4 24.2 9.2 67.3 21.5 19 64 A A G >< S+ 0 0 59 -4,-1.4 3,-1.6 1,-0.3 -3,-0.0 -0.237 78.8 9.1 -53.5 136.8 7.2 68.7 18.6 20 65 A G G 3 S- 0 0 49 1,-0.3 -1,-0.3 2,-0.1 3,-0.1 0.650 132.6 -70.2 65.3 15.2 3.5 68.7 19.4 21 66 A G G < S+ 0 0 0 -3,-2.2 10,-3.0 1,-0.2 11,-0.5 0.610 105.8 122.7 77.4 15.3 4.4 67.9 23.0 22 67 A Q < - 0 0 86 -3,-1.6 2,-0.3 8,-0.2 -1,-0.2 -0.012 62.1-118.7 -90.9-164.2 5.5 64.4 22.1 23 68 A N - 0 0 25 4,-0.3 -5,-0.2 7,-0.1 6,-0.1 -0.821 18.0-172.0-144.9 106.9 8.9 62.7 22.6 24 69 A V S S+ 0 0 102 -7,-2.8 -1,-0.1 -2,-0.3 -6,-0.1 0.879 87.6 37.2 -62.0 -42.7 10.8 61.4 19.6 25 70 A I S S+ 0 0 90 -8,-0.3 -1,-0.2 1,-0.3 -7,-0.1 0.810 130.3 26.3 -88.2 -34.4 13.5 59.6 21.5 26 71 A M S > S- 0 0 84 3,-0.1 3,-1.9 1,-0.1 -1,-0.3 -0.781 78.0-163.7-130.4 84.2 11.5 58.1 24.4 27 72 A P T 3 S+ 0 0 89 0, 0.0 -4,-0.3 0, 0.0 3,-0.2 0.688 82.1 46.1 -49.8 -35.0 8.0 57.8 23.0 28 73 A E T 3 S+ 0 0 139 1,-0.2 2,-1.6 -6,-0.1 11,-0.1 0.736 95.3 76.9 -81.0 -19.8 6.0 57.4 26.2 29 74 A K S < S+ 0 0 92 -3,-1.9 -1,-0.2 -6,-0.1 -3,-0.1 -0.377 71.4 154.9 -93.0 62.4 7.7 60.2 28.1 30 75 A T - 0 0 16 -2,-1.6 -8,-0.2 -3,-0.2 9,-0.1 -0.060 58.7-110.6 -83.3-180.0 5.9 63.0 26.4 31 76 A L S S+ 0 0 21 -10,-3.0 -9,-0.2 -9,-0.1 56,-0.1 0.284 76.9 122.8 -95.4 8.9 5.1 66.6 27.5 32 77 A E S > S- 0 0 46 -11,-0.5 4,-2.6 1,-0.1 3,-0.5 -0.414 77.0-114.6 -65.3 147.2 1.4 65.7 27.8 33 78 A K H > S+ 0 0 68 50,-0.6 4,-2.2 1,-0.3 5,-0.1 0.866 115.5 52.3 -56.8 -38.0 0.1 66.4 31.3 34 79 A E H > S+ 0 0 113 2,-0.2 4,-1.4 1,-0.2 -1,-0.3 0.861 110.5 47.8 -66.9 -36.9 -0.6 62.7 32.0 35 80 A A H > S+ 0 0 10 -3,-0.5 4,-3.2 2,-0.2 5,-0.5 0.891 109.6 52.5 -72.5 -39.5 3.0 61.8 31.0 36 81 A L H X S+ 0 0 9 -4,-2.6 4,-1.6 1,-0.2 7,-0.2 0.919 107.8 53.2 -58.2 -42.3 4.5 64.5 33.1 37 82 A D H < S+ 0 0 84 -4,-2.2 -1,-0.2 -5,-0.2 -2,-0.2 0.888 119.8 33.4 -58.2 -39.7 2.4 63.2 36.0 38 83 A Q H < S+ 0 0 135 -4,-1.4 -2,-0.2 -5,-0.1 -1,-0.2 0.867 130.4 23.8 -85.1 -41.0 3.9 59.7 35.5 39 84 A Y H < S+ 0 0 70 -4,-3.2 2,-0.5 -9,-0.1 -3,-0.2 0.557 93.0 92.0-115.0 -14.3 7.4 60.1 34.2 40 85 A L S >< S- 0 0 18 -4,-1.6 3,-2.5 -5,-0.5 2,-0.1 -0.771 79.3-116.8 -89.6 126.6 8.8 63.5 35.3 41 86 A A T 3 S+ 0 0 63 -2,-0.5 11,-0.1 1,-0.3 10,-0.1 -0.403 104.3 17.1 -58.2 127.8 10.6 63.5 38.6 42 87 A G T 3 S- 0 0 68 -2,-0.1 -1,-0.3 -5,-0.1 6,-0.2 0.361 115.4-113.2 87.1 -6.1 8.6 65.7 41.0 43 88 A G < - 0 0 18 -3,-2.5 2,-1.9 -7,-0.2 -6,-0.2 -0.246 65.2 -13.9 77.9-161.6 5.5 65.6 38.8 44 89 A R S S+ 0 0 68 4,-0.1 2,-0.3 -11,-0.1 -1,-0.1 -0.503 91.4 118.7 -86.1 76.1 3.7 68.2 36.8 45 90 A T S > S- 0 0 57 -2,-1.9 4,-2.1 1,-0.1 5,-0.2 -0.969 70.7-122.7-136.5 153.9 5.2 71.4 38.1 46 91 A E H > S+ 0 0 62 -2,-0.3 4,-2.9 1,-0.2 5,-0.2 0.912 115.3 55.6 -58.7 -41.5 7.2 74.4 36.6 47 92 A K H > S+ 0 0 175 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.902 107.8 47.2 -56.9 -43.9 9.9 73.6 39.2 48 93 A S H > S+ 0 0 12 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.888 112.6 49.6 -68.3 -38.6 10.2 70.0 38.1 49 94 A I H X S+ 0 0 9 -4,-2.1 4,-2.7 2,-0.2 5,-0.2 0.928 109.9 51.2 -63.6 -45.7 10.3 71.1 34.4 50 95 A I H X S+ 0 0 51 -4,-2.9 4,-2.7 1,-0.2 5,-0.2 0.920 108.4 52.5 -56.6 -45.4 13.0 73.7 35.2 51 96 A S H X S+ 0 0 84 -4,-2.2 4,-2.4 1,-0.2 5,-0.3 0.937 112.9 43.0 -59.5 -47.4 15.1 71.0 37.0 52 97 A Q H X S+ 0 0 50 -4,-2.0 4,-2.1 1,-0.2 -1,-0.2 0.896 114.6 49.1 -69.2 -38.9 15.0 68.6 34.1 53 98 A V H < S+ 0 0 14 -4,-2.7 10,-2.3 2,-0.2 11,-0.3 0.923 114.1 47.5 -62.9 -42.1 15.7 71.3 31.5 54 99 A T H < S+ 0 0 44 -4,-2.7 10,-1.8 -5,-0.2 -2,-0.2 0.939 127.2 22.3 -67.4 -47.8 18.6 72.7 33.5 55 100 A G H < S- 0 0 55 -4,-2.4 7,-0.3 -5,-0.2 -1,-0.2 0.601 96.8-141.7 -98.3 -12.3 20.4 69.4 34.2 56 101 A G < - 0 0 18 -4,-2.1 2,-0.2 5,-0.3 -1,-0.2 -0.084 7.1-127.5 72.5 176.8 19.1 67.1 31.5 57 102 A K B > -A 60 0A 96 3,-2.1 3,-2.6 1,-0.1 -1,-0.1 -0.760 53.7 -47.7-165.2 122.8 18.3 63.4 31.9 58 103 A N T 3 S+ 0 0 160 1,-0.3 -1,-0.1 -2,-0.2 0, 0.0 -0.309 131.5 1.4 54.7-121.2 19.5 60.4 30.0 59 104 A A T 3 S+ 0 0 65 -3,-0.1 -1,-0.3 -2,-0.1 -3,-0.0 0.634 116.4 91.9 -72.9 -12.9 19.1 61.2 26.2 60 105 A M B < S-A 57 0A 46 -3,-2.6 -3,-2.1 1,-0.0 0, 0.0 -0.735 78.2-132.1 -83.6 121.4 17.8 64.7 27.0 61 106 A P - 0 0 79 0, 0.0 -5,-0.3 0, 0.0 2,-0.3 -0.243 18.4-104.8 -69.6 159.6 20.7 67.2 27.1 62 107 A A - 0 0 59 -7,-0.3 4,-0.2 -6,-0.2 -8,-0.2 -0.648 23.4-166.9 -77.3 140.5 21.3 69.7 29.8 63 108 A F > + 0 0 25 -10,-2.3 4,-2.8 -2,-0.3 -9,-0.2 0.352 60.7 103.6-109.2 3.0 20.4 73.3 28.9 64 109 A G T 4 S+ 0 0 40 -10,-1.8 -1,-0.1 -11,-0.3 -10,-0.1 0.723 89.2 39.7 -60.4 -25.5 22.2 75.0 31.9 65 110 A G T 4 S+ 0 0 81 -11,-0.2 -1,-0.2 -3,-0.2 -2,-0.1 0.845 119.1 43.8 -86.2 -39.8 25.0 76.1 29.6 66 111 A R T 4 S+ 0 0 190 -4,-0.2 2,-0.3 2,-0.0 -2,-0.2 0.827 116.7 41.4 -76.4 -35.9 23.0 77.0 26.5 67 112 A L S < S- 0 0 16 -4,-2.8 2,-0.1 -13,-0.1 -4,-0.0 -0.787 77.1-120.1-117.4 154.9 20.2 78.9 28.2 68 113 A S > - 0 0 53 -2,-0.3 4,-2.5 1,-0.1 5,-0.2 -0.461 35.0-108.4 -80.4 164.7 19.9 81.4 31.1 69 114 A D H > S+ 0 0 123 1,-0.2 4,-2.4 2,-0.2 5,-0.2 0.881 122.4 53.6 -63.5 -33.2 17.8 80.6 34.2 70 115 A E H > S+ 0 0 129 2,-0.2 4,-2.4 1,-0.2 -1,-0.2 0.934 108.7 48.0 -63.7 -47.0 15.3 83.2 32.9 71 116 A E H > S+ 0 0 75 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.910 112.3 49.9 -60.3 -41.4 15.1 81.5 29.5 72 117 A I H X S+ 0 0 0 -4,-2.5 4,-2.4 1,-0.2 -1,-0.2 0.906 110.1 50.1 -64.5 -41.4 14.7 78.1 31.3 73 118 A A H X S+ 0 0 23 -4,-2.4 4,-2.2 2,-0.2 -2,-0.2 0.898 111.6 49.2 -63.2 -39.7 11.9 79.5 33.5 74 119 A N H X S+ 0 0 14 -4,-2.4 4,-2.1 2,-0.2 -68,-0.2 0.914 111.2 47.0 -68.5 -43.6 10.1 80.9 30.5 75 120 A V H X S+ 0 0 1 -4,-2.6 4,-2.5 2,-0.2 -1,-0.2 0.896 110.7 54.3 -65.0 -36.9 10.3 77.7 28.5 76 121 A A H X S+ 0 0 0 -4,-2.4 4,-2.6 1,-0.2 -2,-0.2 0.921 107.5 50.0 -61.1 -43.2 9.1 75.8 31.6 77 122 A A H X S+ 0 0 10 -4,-2.2 4,-2.4 1,-0.2 5,-0.2 0.905 111.3 49.2 -59.5 -44.7 6.0 78.1 31.8 78 123 A Y H X S+ 0 0 31 -4,-2.1 4,-2.5 -76,-0.2 -2,-0.2 0.907 110.8 49.6 -61.4 -42.9 5.3 77.5 28.2 79 124 A V H X S+ 0 0 9 -4,-2.5 4,-2.6 2,-0.2 -2,-0.2 0.936 112.5 47.0 -64.2 -46.1 5.5 73.7 28.6 80 125 A L H X S+ 0 0 41 -4,-2.6 4,-2.5 2,-0.2 -2,-0.2 0.937 113.9 46.6 -62.6 -46.1 3.2 73.6 31.6 81 126 A A H X S+ 0 0 52 -4,-2.4 4,-1.4 1,-0.2 -1,-0.2 0.904 113.8 49.0 -61.9 -41.0 0.6 75.9 30.0 82 127 A S H <>S+ 0 0 16 -4,-2.5 5,-2.8 -5,-0.2 -1,-0.2 0.892 110.0 51.4 -67.0 -40.2 0.8 73.8 26.8 83 128 A A H ><5S+ 0 0 0 -4,-2.6 3,-1.5 1,-0.2 -50,-0.6 0.920 109.7 49.4 -59.2 -45.2 0.4 70.6 28.8 84 129 A E H 3<5S+ 0 0 102 -4,-2.5 -1,-0.2 1,-0.3 -2,-0.2 0.800 111.8 50.7 -64.8 -27.0 -2.7 72.0 30.6 85 130 A A T 3<5S- 0 0 82 -4,-1.4 -1,-0.3 -5,-0.2 -2,-0.2 0.310 114.4-117.6 -91.4 4.0 -4.0 72.9 27.1 86 131 A G T < 5 0 0 44 -3,-1.5 -3,-0.2 1,-0.2 -2,-0.1 0.704 360.0 360.0 66.3 20.2 -3.4 69.4 25.7 87 132 A W < 0 0 76 -5,-2.8 -1,-0.2 -6,-0.2 -4,-0.1 0.788 360.0 360.0 53.3 360.0 -0.9 70.8 23.1