==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=15-APR-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL PROTEIN 08-FEB-12 4DMT . COMPND 2 MOLECULE: COLLAGEN III DERIVED PEPTIDE; . SOURCE 2 SYNTHETIC: YES; . AUTHOR T.H.C.BRONDIJK,E.G.HUIZINGA . 90 3 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5964.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 29 32.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 96 0, 0.0 2,-0.6 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 177.3 -30.0 5.1 -14.0 2 2 A P - 0 0 91 0, 0.0 33,-0.0 0, 0.0 0, 0.0 -0.692 360.0-131.1 -85.4 113.3 -28.3 7.2 -11.3 3 3 A X - 0 0 105 -2,-0.6 32,-0.2 29,-0.2 31,-0.2 -0.283 27.2-115.3 -60.9 150.0 -24.7 6.0 -10.5 4 4 A G - 0 0 10 29,-1.7 61,-0.2 60,-0.4 -1,-0.1 -0.042 40.3 -67.8 -76.3-179.3 -24.0 5.7 -6.8 5 5 A P - 0 0 62 0, 0.0 61,-2.5 0, 0.0 30,-0.4 -0.304 62.1 -89.2 -65.4 154.3 -21.5 7.5 -4.6 6 6 A X - 0 0 107 59,-0.2 31,-0.2 29,-0.2 32,-0.2 -0.284 47.5-109.6 -60.0 149.5 -17.7 7.0 -5.2 7 7 A G - 0 0 9 29,-2.5 61,-0.2 60,-0.3 -1,-0.1 -0.164 36.2 -94.1 -71.7 172.6 -16.1 4.1 -3.2 8 8 A P - 0 0 58 0, 0.0 61,-1.9 0, 0.0 30,-0.5 -0.358 52.3 -76.9 -81.8 165.3 -13.7 4.6 -0.3 9 9 A X - 0 0 95 59,-0.2 31,-0.2 29,-0.2 32,-0.2 -0.243 57.0-105.6 -58.4 152.1 -9.9 4.6 -0.6 10 10 A G - 0 0 7 29,-2.1 61,-0.2 60,-0.3 -1,-0.1 -0.031 52.2 -56.8 -71.7 179.4 -8.3 1.3 -1.0 11 11 A P - 0 0 71 0, 0.0 61,-2.6 0, 0.0 30,-0.3 -0.223 63.6 -98.8 -54.8 144.3 -6.4 -0.8 1.5 12 12 A R - 0 0 165 59,-0.2 31,-0.2 29,-0.2 32,-0.1 -0.344 45.6-105.3 -59.9 143.8 -3.3 0.8 3.1 13 13 A G - 0 0 6 29,-2.9 32,-0.4 60,-0.3 61,-0.2 -0.151 41.4 -88.6 -64.3 167.1 -0.1 -0.1 1.6 14 14 A Q - 0 0 122 58,-0.4 61,-2.5 30,-0.2 30,-0.3 -0.353 53.8 -85.5 -76.1 158.7 2.3 -2.5 3.2 15 15 A X - 0 0 63 59,-0.2 31,-0.2 29,-0.1 -1,-0.1 -0.261 45.1-108.2 -66.7 151.8 5.0 -1.3 5.6 16 16 A G - 0 0 11 29,-2.5 32,-0.4 60,-0.3 60,-0.2 -0.231 44.3 -79.9 -69.7 166.5 8.3 -0.1 4.5 17 17 A V - 0 0 89 58,-0.4 61,-3.0 30,-0.2 30,-0.4 -0.365 54.3 -95.9 -64.8 141.5 11.6 -1.9 4.9 18 18 A M - 0 0 75 59,-0.2 31,-0.2 29,-0.2 -1,-0.1 -0.289 53.7 -91.2 -55.0 142.3 13.3 -1.7 8.3 19 19 A G - 0 0 5 29,-3.0 32,-0.5 60,-0.3 60,-0.2 -0.117 46.1 -95.7 -55.3 151.5 16.0 1.0 8.4 20 20 A F - 0 0 163 58,-0.4 61,-2.6 30,-0.2 30,-0.3 -0.232 50.9 -89.2 -60.4 156.2 19.6 0.2 7.5 21 21 A X - 0 0 81 59,-0.2 31,-0.2 29,-0.2 32,-0.2 -0.373 52.1 -99.5 -65.4 153.5 21.9 -0.6 10.4 22 22 A G - 0 0 8 29,-2.4 60,-0.2 60,-0.4 61,-0.2 -0.091 42.2 -90.7 -68.0 168.2 23.7 2.4 11.9 23 23 A P - 0 0 44 0, 0.0 61,-2.1 0, 0.0 30,-0.3 -0.297 56.1 -76.3 -72.9 166.1 27.2 3.4 11.1 24 24 A X - 0 0 101 59,-0.2 32,-0.2 29,-0.2 31,-0.2 -0.270 57.2-109.3 -59.4 148.6 30.2 2.2 13.1 25 25 A G - 0 0 6 29,-2.1 61,-0.2 60,-0.3 -1,-0.1 -0.083 44.9 -68.2 -71.5 176.9 30.6 3.9 16.5 26 26 A P - 0 0 59 0, 0.0 61,-2.1 0, 0.0 30,-0.4 -0.164 65.4 -84.5 -59.3 156.0 33.3 6.3 17.5 27 27 A X - 0 0 105 59,-0.2 31,-0.2 29,-0.2 32,-0.2 -0.286 52.4-103.9 -59.7 153.0 36.9 5.1 17.9 28 28 A G - 0 0 8 29,-2.5 61,-0.2 60,-0.2 -1,-0.1 -0.129 37.6 -92.8 -71.0 174.0 37.9 3.5 21.1 29 29 A P 0 0 56 0, 0.0 61,-2.7 0, 0.0 30,-0.5 -0.250 360.0 360.0 -79.9 171.2 39.9 5.0 23.9 30 30 A X 0 0 130 59,-0.2 31,-0.2 29,-0.1 62,-0.1 -0.209 360.0 360.0 -57.4 360.0 43.7 4.7 24.3 31 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 32 1 B G 0 0 67 0, 0.0 -29,-0.2 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 179.4 -29.0 2.8 -9.9 33 2 B P - 0 0 50 0, 0.0 -29,-1.7 0, 0.0 33,-0.0 -0.207 360.0 -84.8 -63.3 160.4 -25.6 1.5 -11.2 34 3 B X - 0 0 99 -31,-0.2 31,-0.2 29,-0.2 32,-0.2 -0.282 43.5-111.0 -65.3 153.0 -22.7 1.4 -8.8 35 4 B G - 0 0 5 29,-2.1 -29,-0.2 -30,-0.4 -1,-0.1 -0.259 46.2 -83.3 -68.1 170.5 -20.6 4.4 -8.1 36 5 B P - 0 0 62 0, 0.0 -29,-2.5 0, 0.0 30,-0.4 -0.340 55.2 -88.0 -69.7 161.1 -17.0 4.4 -9.3 37 6 B X - 0 0 95 -31,-0.2 31,-0.2 29,-0.2 32,-0.1 -0.268 44.7-106.8 -63.4 155.2 -14.2 2.8 -7.3 38 7 B G - 0 0 8 29,-2.3 -29,-0.2 -30,-0.5 -1,-0.1 -0.125 44.7 -87.7 -66.9 175.6 -12.4 4.8 -4.7 39 8 B P - 0 0 62 0, 0.0 -29,-2.1 0, 0.0 30,-0.3 -0.301 59.6 -63.8 -85.0 171.3 -8.8 6.0 -5.2 40 9 B X - 0 0 97 -31,-0.2 31,-0.2 29,-0.2 32,-0.2 -0.242 64.3-102.6 -55.5 141.2 -5.6 4.1 -4.4 41 10 B G - 0 0 4 29,-2.6 -29,-0.2 -30,-0.3 -1,-0.1 -0.056 47.7 -77.5 -62.2 164.6 -5.1 3.3 -0.7 42 11 B P - 0 0 55 0, 0.0 -29,-2.9 0, 0.0 30,-0.2 -0.251 54.1 -94.6 -62.8 152.2 -2.8 5.3 1.4 43 12 B R - 0 0 145 -31,-0.2 31,-0.2 29,-0.2 32,-0.1 -0.337 51.2-101.2 -59.4 142.7 0.9 4.7 1.3 44 13 B G - 0 0 6 29,-2.7 32,-0.5 -30,-0.3 -30,-0.2 -0.126 43.8 -86.5 -61.7 166.1 2.1 2.2 3.9 45 14 B Q - 0 0 122 -32,-0.4 -29,-2.5 30,-0.2 30,-0.3 -0.345 52.2 -93.3 -69.1 156.1 3.8 3.3 7.1 46 15 B X - 0 0 84 -31,-0.2 31,-0.2 29,-0.2 32,-0.1 -0.298 49.7 -94.5 -63.2 155.4 7.5 3.8 7.1 47 16 B G - 0 0 12 29,-2.3 32,-0.5 -30,-0.4 -30,-0.2 -0.145 47.6 -91.5 -61.8 165.1 9.7 0.9 8.2 48 17 B V - 0 0 97 -32,-0.4 -29,-3.0 30,-0.2 30,-0.2 -0.283 54.4 -78.1 -75.0 165.7 10.9 0.6 11.7 49 18 B M - 0 0 84 -31,-0.2 31,-0.2 29,-0.2 -1,-0.1 -0.362 53.9-111.5 -66.0 144.8 14.2 2.0 12.9 50 19 B G - 0 0 7 29,-2.5 32,-0.4 -30,-0.3 -30,-0.2 -0.105 33.9 -85.3 -73.2 167.2 17.3 0.1 12.1 51 20 B F - 0 0 130 -32,-0.5 -29,-2.4 30,-0.2 30,-0.3 -0.327 53.5 -93.6 -61.1 152.6 19.7 -1.9 14.3 52 21 B X - 0 0 96 -31,-0.2 31,-0.2 29,-0.2 32,-0.2 -0.332 46.0-106.4 -59.8 151.2 22.6 -0.0 16.0 53 22 B G - 0 0 8 29,-2.5 -29,-0.2 -30,-0.3 -1,-0.1 -0.201 43.1 -87.3 -68.0 170.6 25.8 0.0 14.1 54 23 B P - 0 0 62 0, 0.0 -29,-2.1 0, 0.0 30,-0.4 -0.296 56.1 -76.7 -74.1 165.9 28.8 -2.0 15.2 55 24 B X - 0 0 96 -31,-0.2 31,-0.2 29,-0.2 32,-0.2 -0.251 57.5-104.5 -55.7 150.6 31.3 -0.9 17.8 56 25 B G - 0 0 7 29,-2.1 -29,-0.2 -30,-0.4 -1,-0.1 -0.045 45.7 -76.5 -67.6 178.7 33.8 1.6 16.5 57 26 B P - 0 0 59 0, 0.0 -29,-2.5 0, 0.0 30,-0.4 -0.246 62.2 -77.5 -73.2 166.7 37.5 0.8 15.6 58 27 B X - 0 0 94 -31,-0.2 31,-0.2 29,-0.1 32,-0.1 -0.194 46.9-112.2 -60.8 152.4 40.1 0.3 18.3 59 28 B G - 0 0 7 29,-1.6 -29,-0.1 -30,-0.5 -1,-0.1 -0.236 43.8 -84.8 -68.9 172.9 41.7 3.3 20.0 60 29 B P 0 0 71 0, 0.0 30,-0.3 0, 0.0 -1,-0.1 -0.369 360.0 360.0 -73.0 159.7 45.3 4.2 19.4 61 30 B X 0 0 129 -31,-0.2 31,-0.2 29,-0.2 -31,-0.1 -0.349 360.0 360.0 -54.0 360.0 48.1 2.5 21.4 62 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 63 1 C G 0 0 42 0, 0.0 -29,-0.2 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 174.4 -26.9 3.4 -6.8 64 2 C P - 0 0 62 0, 0.0 -29,-2.1 0, 0.0 -60,-0.4 -0.343 360.0 -80.9 -73.4 162.5 -24.8 1.7 -4.2 65 3 C X - 0 0 100 -31,-0.2 -59,-0.2 -61,-0.2 -58,-0.2 -0.265 52.4-106.2 -58.2 148.9 -21.4 3.0 -3.3 66 4 C G - 0 0 6 -61,-2.5 -29,-0.2 -30,-0.4 -1,-0.1 -0.186 44.9 -81.0 -67.6 168.2 -18.6 2.0 -5.6 67 5 C P - 0 0 59 0, 0.0 -29,-2.3 0, 0.0 -60,-0.3 -0.220 54.4 -87.0 -63.0 159.9 -15.9 -0.5 -4.7 68 6 C X - 0 0 98 -31,-0.2 -59,-0.2 -61,-0.2 -58,-0.2 -0.310 53.9-104.6 -60.7 152.3 -12.9 0.2 -2.5 69 7 C G - 0 0 8 -61,-1.9 -29,-0.2 -30,-0.3 -1,-0.1 -0.072 46.8 -69.8 -72.2 179.0 -10.0 1.6 -4.5 70 8 C P - 0 0 61 0, 0.0 -29,-2.6 0, 0.0 -60,-0.3 -0.161 64.9 -77.4 -67.0 162.4 -6.8 -0.3 -5.4 71 9 C X - 0 0 119 -31,-0.2 -59,-0.2 -61,-0.2 -58,-0.1 -0.318 51.6-115.0 -61.6 142.5 -4.2 -1.3 -2.8 72 10 C G - 0 0 13 -61,-2.6 -58,-0.4 -30,-0.2 -29,-0.2 -0.289 34.1 -96.8 -72.0 162.7 -1.9 1.5 -1.6 73 11 C P - 0 0 52 0, 0.0 -29,-2.7 0, 0.0 -60,-0.3 -0.379 46.8 -82.4 -80.7 161.1 1.8 1.6 -2.3 74 12 C R - 0 0 141 -31,-0.2 -59,-0.2 -61,-0.2 -58,-0.1 -0.216 48.7-107.3 -62.2 145.9 4.6 0.4 0.1 75 13 C G - 0 0 6 -61,-2.5 -58,-0.4 -30,-0.3 -30,-0.2 -0.180 39.4 -88.9 -67.8 165.0 5.8 2.6 2.8 76 14 C Q - 0 0 125 -32,-0.5 -29,-2.3 -60,-0.2 -60,-0.3 -0.294 52.8 -85.8 -70.2 157.4 9.2 4.4 2.8 77 15 C X - 0 0 105 -31,-0.2 -59,-0.2 -61,-0.2 -1,-0.1 -0.299 53.2-104.9 -59.8 149.7 12.3 2.8 4.3 78 16 C G - 0 0 15 -61,-3.0 -58,-0.4 -30,-0.2 -30,-0.2 -0.093 43.3 -75.9 -70.9 170.6 12.7 3.2 8.0 79 17 C V - 0 0 101 -32,-0.5 -29,-2.5 -60,-0.2 -60,-0.3 -0.483 54.4-104.9 -65.9 135.6 15.1 5.5 9.8 80 18 C M - 0 0 101 -31,-0.2 -59,-0.2 -2,-0.2 -58,-0.1 -0.301 44.0-103.3 -60.0 144.8 18.8 4.3 9.9 81 19 C G - 0 0 3 -61,-2.6 -30,-0.2 -30,-0.3 -29,-0.2 -0.102 43.1 -83.8 -64.9 166.9 19.8 2.9 13.2 82 20 C F - 0 0 134 -32,-0.4 -29,-2.5 -60,-0.2 -60,-0.4 -0.325 52.4 -90.5 -64.7 155.0 22.0 4.8 15.7 83 21 C X - 0 0 86 -31,-0.2 -59,-0.2 -61,-0.2 -58,-0.2 -0.277 52.2-102.6 -55.4 152.1 25.8 4.8 15.4 84 22 C G - 0 0 8 -61,-2.1 -29,-0.2 -30,-0.4 -1,-0.1 -0.108 43.5 -85.4 -67.8 175.1 27.4 1.9 17.4 85 23 C P - 0 0 65 0, 0.0 -29,-2.1 0, 0.0 -60,-0.3 -0.301 61.9 -70.6 -73.1 166.8 29.1 2.4 20.7 86 24 C X - 0 0 95 -31,-0.2 -59,-0.2 -61,-0.2 -58,-0.2 -0.237 60.8-103.7 -57.3 150.0 32.7 3.5 21.0 87 25 C G - 0 0 6 -61,-2.1 -29,-0.1 -30,-0.4 3,-0.1 0.024 44.5 -75.8 -70.7 177.4 35.3 0.9 20.0 88 26 C P - 0 0 60 0, 0.0 -29,-1.6 0, 0.0 -60,-0.2 -0.254 62.4 -77.2 -74.0 162.2 37.4 -1.3 22.2 89 27 C X - 0 0 108 -31,-0.2 -59,-0.2 -61,-0.2 3,-0.1 -0.288 50.3-115.4 -57.9 141.7 40.5 0.1 24.0 90 28 C G - 0 0 9 -61,-2.7 -29,-0.2 -30,-0.3 -1,-0.1 -0.197 45.5 -74.4 -65.3 168.7 43.6 0.5 22.0 91 29 C P 0 0 64 0, 0.0 -1,-0.2 0, 0.0 0, 0.0 -0.044 360.0 360.0 -54.4 163.9 46.7 -1.5 22.6 92 30 C X 0 0 184 -31,-0.2 -31,-0.0 -3,-0.1 -62,-0.0 -0.279 360.0 360.0 -61.6 360.0 49.0 -0.9 25.6