==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 25-APR-06 2DN4 . COMPND 2 MOLECULE: GENERAL TRANSCRIPTION FACTOR II-I; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR Y.DOI-KATAYAMA,H.HIROTA,T.SUETAKE,F.HAYASHI,S.YOKOYAMA, . 99 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7838.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 59.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 5.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 12.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 10.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 29 29.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 139 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 75.4 2.8 18.7 -16.7 2 2 A S + 0 0 125 3,-0.0 2,-0.3 2,-0.0 0, 0.0 -0.948 360.0 159.0-114.6 126.2 5.9 16.8 -15.4 3 3 A S + 0 0 126 -2,-0.5 3,-0.1 1,-0.0 4,-0.1 -0.926 36.9 68.0-140.5 163.4 5.5 13.6 -13.3 4 4 A G + 0 0 49 -2,-0.3 2,-1.0 2,-0.2 3,-0.2 -0.452 67.9 100.2 125.9 -57.9 7.5 10.5 -12.4 5 5 A S S S- 0 0 121 1,-0.2 -1,-0.2 -2,-0.0 -3,-0.0 -0.506 106.9 -22.1 -66.6 101.6 10.3 12.0 -10.2 6 6 A S S S+ 0 0 83 -2,-1.0 2,-0.3 1,-0.1 -2,-0.2 0.865 82.5 179.0 59.7 109.0 9.0 11.1 -6.8 7 7 A G > - 0 0 26 -3,-0.2 4,-3.8 1,-0.2 5,-0.2 -0.999 39.8-120.0-144.1 142.9 5.2 10.6 -6.7 8 8 A L H > S+ 0 0 38 -2,-0.3 4,-2.9 1,-0.2 5,-0.3 0.924 116.3 48.0 -40.5 -66.6 2.7 9.7 -4.0 9 9 A R H > S+ 0 0 126 1,-0.3 4,-4.8 2,-0.2 -1,-0.2 0.903 114.1 46.6 -40.6 -57.6 1.6 6.6 -5.9 10 10 A K H > S+ 0 0 101 1,-0.2 4,-3.3 2,-0.2 5,-0.3 0.904 110.8 53.9 -53.2 -45.1 5.3 5.6 -6.3 11 11 A Q H X S+ 0 0 90 -4,-3.8 4,-1.7 2,-0.2 -1,-0.2 0.920 116.7 36.7 -55.4 -48.1 5.8 6.5 -2.7 12 12 A V H X S+ 0 0 0 -4,-2.9 4,-4.4 2,-0.2 5,-0.3 0.922 113.7 57.4 -70.7 -46.1 3.0 4.1 -1.6 13 13 A E H X S+ 0 0 59 -4,-4.8 4,-1.8 -5,-0.3 -2,-0.2 0.906 113.1 40.3 -49.6 -48.4 3.8 1.6 -4.3 14 14 A E H X S+ 0 0 115 -4,-3.3 4,-2.4 -5,-0.2 -1,-0.3 0.839 117.9 50.0 -70.1 -34.6 7.3 1.3 -2.9 15 15 A L H X S+ 0 0 9 -4,-1.7 4,-2.8 -5,-0.3 5,-0.3 0.980 107.3 51.9 -66.9 -58.6 5.9 1.4 0.6 16 16 A F H X S+ 0 0 7 -4,-4.4 4,-2.3 1,-0.2 -2,-0.2 0.904 116.6 40.3 -42.2 -57.0 3.3 -1.2 0.1 17 17 A E H X S+ 0 0 53 -4,-1.8 4,-4.6 -5,-0.3 5,-0.3 0.920 112.3 57.9 -60.1 -46.5 5.9 -3.6 -1.3 18 18 A R H X S+ 0 0 148 -4,-2.4 4,-3.2 2,-0.2 8,-0.2 0.950 108.3 44.0 -47.2 -63.5 8.4 -2.6 1.3 19 19 A K H X S+ 0 0 54 -4,-2.8 4,-2.3 1,-0.2 -1,-0.2 0.929 117.5 46.7 -47.8 -54.1 6.2 -3.5 4.2 20 20 A Y H X S+ 0 0 15 -4,-2.3 4,-0.8 -5,-0.3 -1,-0.2 0.923 111.8 50.0 -54.5 -49.7 5.3 -6.7 2.5 21 21 A A H ><>S+ 0 0 4 -4,-4.6 5,-2.8 1,-0.2 3,-0.9 0.877 109.0 54.0 -57.0 -39.5 8.9 -7.4 1.6 22 22 A Q H ><5S+ 0 0 128 -4,-3.2 3,-2.3 -5,-0.3 -1,-0.2 0.909 100.3 58.2 -61.3 -44.4 9.7 -6.8 5.3 23 23 A A H 3<5S+ 0 0 41 -4,-2.3 -1,-0.3 1,-0.3 -2,-0.2 0.710 120.5 31.4 -58.5 -19.4 7.2 -9.3 6.4 24 24 A I T <<5S- 0 0 67 -3,-0.9 -1,-0.3 -4,-0.8 -2,-0.3 0.103 112.8-119.3-123.1 16.5 9.2 -11.7 4.3 25 25 A K T < 5 + 0 0 195 -3,-2.3 2,-0.6 1,-0.2 -3,-0.3 0.913 52.8 169.4 41.4 58.6 12.5 -9.9 4.9 26 26 A A < - 0 0 31 -5,-2.8 -1,-0.2 -8,-0.2 4,-0.1 -0.907 29.8-171.4-106.0 121.1 12.9 -9.3 1.2 27 27 A K + 0 0 218 -2,-0.6 -1,-0.1 -3,-0.1 -2,-0.0 0.115 70.0 70.4 -93.8 19.4 15.6 -6.9 0.1 28 28 A G S S- 0 0 35 -10,-0.1 2,-0.6 -7,-0.1 -2,-0.1 -0.818 98.2 -79.1-131.1 170.2 14.2 -7.0 -3.4 29 29 A P - 0 0 113 0, 0.0 2,-0.3 0, 0.0 -2,-0.1 -0.607 51.7-175.0 -74.9 117.2 11.2 -5.7 -5.3 30 30 A V - 0 0 32 -2,-0.6 2,-0.4 -4,-0.1 -9,-0.1 -0.744 21.0-120.8-111.5 160.0 8.2 -8.0 -4.6 31 31 A T - 0 0 92 -2,-0.3 0, 0.0 -11,-0.1 0, 0.0 -0.824 16.3-135.0-103.7 140.3 4.7 -8.0 -6.1 32 32 A I - 0 0 11 -2,-0.4 2,-0.6 4,-0.0 -15,-0.1 -0.851 17.9-138.3 -97.8 114.2 1.6 -7.7 -4.0 33 33 A P > - 0 0 22 0, 0.0 4,-1.1 0, 0.0 5,-0.1 -0.611 16.0-171.7 -75.0 114.1 -1.1 -10.2 -5.0 34 34 A Y H > S+ 0 0 106 -2,-0.6 4,-1.7 2,-0.2 5,-0.0 0.847 86.7 40.6 -72.1 -36.2 -4.4 -8.4 -5.1 35 35 A P H >>S+ 0 0 73 0, 0.0 4,-4.4 0, 0.0 5,-0.6 0.981 110.5 52.4 -75.0 -63.4 -6.3 -11.7 -5.6 36 36 A L H >5S+ 0 0 39 1,-0.3 4,-0.8 2,-0.2 8,-0.2 0.829 120.2 40.0 -40.5 -38.7 -4.4 -14.0 -3.3 37 37 A F H <5S+ 0 0 2 -4,-1.1 -1,-0.3 2,-0.2 6,-0.2 0.864 116.2 49.0 -79.8 -39.8 -5.1 -11.3 -0.7 38 38 A Q H ><5S+ 0 0 124 -4,-1.7 3,-0.6 1,-0.2 -2,-0.2 0.916 115.4 43.6 -65.5 -45.3 -8.6 -10.6 -1.8 39 39 A S H 3<5S+ 0 0 95 -4,-4.4 2,-0.3 1,-0.3 -1,-0.2 0.779 126.8 35.2 -70.0 -27.8 -9.5 -14.3 -1.8 40 40 A H T >X< + 0 0 68 -4,-0.8 4,-2.5 -5,-0.6 3,-0.7 -0.633 66.5 142.3-128.2 72.2 -7.7 -14.6 1.5 41 41 A V T <4 S+ 0 0 78 -3,-0.6 -1,-0.1 -2,-0.3 -3,-0.1 0.546 71.3 65.9 -85.6 -9.5 -8.3 -11.4 3.4 42 42 A E T 34 S+ 0 0 173 -3,-0.1 -1,-0.2 -4,-0.1 3,-0.1 0.424 119.6 19.9 -89.6 -1.1 -8.6 -13.4 6.6 43 43 A D T <4 S+ 0 0 48 -3,-0.7 38,-2.2 1,-0.3 2,-0.7 0.581 126.2 45.0-129.2 -53.5 -5.0 -14.3 6.2 44 44 A L E < S+A 80 0A 0 -4,-2.5 2,-0.3 -8,-0.2 -1,-0.3 -0.897 75.0 134.3-104.9 112.3 -3.3 -11.8 3.9 45 45 A Y E -A 79 0A 57 34,-1.6 34,-2.1 -2,-0.7 2,-0.3 -0.990 48.9-118.0-155.5 153.0 -4.2 -8.2 4.7 46 46 A V E -A 78 0A 16 -2,-0.3 32,-0.2 32,-0.2 2,-0.2 -0.747 32.7-177.4 -96.0 141.4 -2.7 -4.8 5.1 47 47 A E E +A 77 0A 102 30,-4.7 30,-3.5 -2,-0.3 28,-0.0 -0.720 54.5 57.4-128.3 177.9 -2.9 -2.9 8.4 48 48 A G S S+ 0 0 25 28,-0.4 28,-0.6 1,-0.3 27,-0.3 0.463 74.5 146.5 77.3 1.5 -1.8 0.4 9.9 49 49 A L - 0 0 35 26,-0.2 -1,-0.3 28,-0.2 3,-0.1 -0.307 48.9-111.3 -68.9 154.8 -3.8 2.0 7.1 50 50 A P > - 0 0 34 0, 0.0 3,-0.8 0, 0.0 2,-0.3 0.016 44.8 -71.9 -74.9-173.4 -5.6 5.3 7.8 51 51 A E T 3 S+ 0 0 174 1,-0.2 17,-0.0 17,-0.0 0, 0.0 -0.650 115.9 15.4 -86.5 139.6 -9.4 5.9 8.0 52 52 A G T 3 S+ 0 0 52 -2,-0.3 -1,-0.2 1,-0.1 13,-0.0 0.791 106.1 99.8 69.9 29.3 -11.4 5.7 4.8 53 53 A I < - 0 0 5 -3,-0.8 -1,-0.1 8,-0.0 8,-0.0 -0.750 50.9-177.2-150.3 95.7 -8.5 4.1 3.0 54 54 A P - 0 0 78 0, 0.0 2,-0.8 0, 0.0 -7,-0.0 0.191 44.1 -77.4 -75.1-160.7 -8.6 0.3 2.5 55 55 A F S S+ 0 0 30 -9,-0.1 2,-0.3 -6,-0.1 -9,-0.1 -0.820 77.4 122.4-109.7 91.5 -6.0 -1.9 1.0 56 56 A R S S- 0 0 120 -2,-0.8 5,-0.2 1,-0.1 4,-0.1 -0.927 70.6 -49.4-143.5 165.8 -6.2 -1.6 -2.8 57 57 A R >> - 0 0 101 -2,-0.3 3,-1.2 1,-0.2 4,-0.9 -0.047 44.0-143.1 -37.9 125.5 -4.0 -0.6 -5.7 58 58 A P T 34 S+ 0 0 11 0, 0.0 -1,-0.2 0, 0.0 -46,-0.1 0.427 93.5 80.7 -75.0 1.6 -2.4 2.7 -4.9 59 59 A S T 34 S+ 0 0 56 1,-0.1 -2,-0.1 -50,-0.1 -50,-0.0 0.290 98.3 39.8 -88.7 8.5 -2.9 3.6 -8.5 60 60 A T T <4 S+ 0 0 89 -3,-1.2 -1,-0.1 -4,-0.1 -3,-0.1 0.643 88.0 103.6-121.7 -40.4 -6.5 4.5 -7.7 61 61 A Y S < S- 0 0 24 -4,-0.9 -52,-0.1 -5,-0.2 -8,-0.0 -0.021 78.2-101.4 -45.8 150.5 -6.3 6.2 -4.4 62 62 A G > - 0 0 26 1,-0.1 4,-2.8 4,-0.0 5,-0.2 -0.258 28.2-106.9 -74.1 164.1 -6.7 10.0 -4.5 63 63 A I H > S+ 0 0 131 1,-0.2 4,-1.8 2,-0.2 -1,-0.1 0.903 126.2 39.6 -56.2 -44.0 -3.7 12.4 -4.2 64 64 A P H > S+ 0 0 82 0, 0.0 4,-1.8 0, 0.0 -1,-0.2 0.807 112.2 57.4 -74.9 -31.8 -4.9 13.2 -0.7 65 65 A R H > S+ 0 0 107 2,-0.2 4,-1.8 1,-0.2 -2,-0.2 0.876 108.0 47.2 -65.3 -39.0 -5.7 9.6 0.1 66 66 A L H X S+ 0 0 9 -4,-2.8 4,-2.2 2,-0.2 5,-0.3 0.963 105.0 58.7 -66.3 -54.1 -2.2 8.6 -0.8 67 67 A E H >X S+ 0 0 105 -4,-1.8 4,-1.7 1,-0.3 3,-0.5 0.888 107.2 48.4 -39.6 -54.9 -0.6 11.3 1.3 68 68 A R H >X S+ 0 0 110 -4,-1.8 4,-1.9 1,-0.3 3,-0.8 0.936 106.6 55.0 -52.8 -53.0 -2.4 9.9 4.4 69 69 A I H 3< S+ 0 0 0 -4,-1.8 -1,-0.3 1,-0.3 7,-0.2 0.833 111.0 47.0 -49.9 -34.8 -1.3 6.4 3.6 70 70 A L H << S+ 0 0 23 -4,-2.2 4,-0.3 -3,-0.5 -1,-0.3 0.774 110.2 51.8 -77.5 -28.2 2.2 7.8 3.6 71 71 A L H << S+ 0 0 139 -4,-1.7 -2,-0.2 -3,-0.8 -1,-0.2 0.644 113.8 44.4 -80.5 -16.7 1.4 9.6 6.9 72 72 A A S >X S+ 0 0 15 -4,-1.9 4,-3.9 -5,-0.2 3,-2.9 0.409 81.3 103.0-103.8 -3.4 0.3 6.3 8.3 73 73 A K T 34 S+ 0 0 82 -5,-0.3 -1,-0.1 1,-0.3 -2,-0.1 0.856 75.3 62.3 -45.8 -40.2 3.2 4.5 6.8 74 74 A E T 34 S+ 0 0 175 -4,-0.3 -1,-0.3 1,-0.2 -2,-0.1 0.807 117.0 29.5 -56.5 -31.0 4.6 4.5 10.3 75 75 A R T <4 S+ 0 0 206 -3,-2.9 -2,-0.3 -27,-0.3 -1,-0.2 0.782 95.5 111.3 -96.8 -36.8 1.6 2.5 11.3 76 76 A I < + 0 0 1 -4,-3.9 -28,-0.4 -28,-0.6 2,-0.3 0.007 44.5 169.7 -38.7 142.7 1.1 0.7 8.0 77 77 A R E -A 47 0A 170 -30,-3.5 -30,-4.7 2,-0.0 2,-0.6 -0.973 31.9-135.2-161.6 148.3 1.9 -3.0 8.3 78 78 A F E -A 46 0A 8 -2,-0.3 2,-0.7 -32,-0.2 -32,-0.2 -0.936 15.6-160.5-114.3 113.3 1.6 -6.2 6.2 79 79 A V E -A 45 0A 19 -34,-2.1 -34,-1.6 -2,-0.6 2,-0.9 -0.832 3.7-169.8 -95.5 115.7 0.3 -9.3 8.0 80 80 A I E +A 44 0A 20 -2,-0.7 -36,-0.2 1,-0.2 3,-0.1 -0.653 18.5 161.9-105.0 73.4 1.2 -12.5 6.2 81 81 A K S S+ 0 0 121 -38,-2.2 2,-0.6 -2,-0.9 -1,-0.2 0.968 72.2 38.2 -53.9 -60.3 -0.9 -15.0 8.1 82 82 A K + 0 0 74 -3,-0.2 -1,-0.2 1,-0.2 4,-0.2 -0.862 62.7 172.4 -99.6 120.3 -0.7 -17.6 5.4 83 83 A H S >> S+ 0 0 89 -2,-0.6 3,-2.5 2,-0.2 4,-1.1 0.908 79.3 52.7 -88.5 -53.7 2.6 -17.8 3.6 84 84 A E T 34 S+ 0 0 130 1,-0.3 -1,-0.1 2,-0.2 -2,-0.1 0.868 96.0 71.0 -49.3 -41.5 2.0 -20.9 1.5 85 85 A L T 34 S+ 0 0 47 1,-0.2 -1,-0.3 4,-0.0 -2,-0.2 0.821 101.4 47.8 -44.8 -34.8 -1.1 -19.2 0.2 86 86 A L T <4 S+ 0 0 19 -3,-2.5 -2,-0.2 -4,-0.2 -1,-0.2 0.994 98.9 73.3 -70.1 -67.2 1.3 -16.9 -1.6 87 87 A N S < S+ 0 0 126 -4,-1.1 0, 0.0 2,-0.1 0, 0.0 0.057 85.2 44.9 -43.5 159.6 3.6 -19.5 -3.1 88 88 A S + 0 0 114 1,-0.0 0, 0.0 0, 0.0 0, 0.0 0.820 67.3 107.1 64.8 113.4 2.2 -21.5 -6.0 89 89 A T S S- 0 0 105 0, 0.0 -2,-0.1 0, 0.0 -3,-0.0 0.121 101.8 -38.8 178.7 -36.3 0.4 -19.4 -8.6 90 90 A R S S- 0 0 203 0, 0.0 -3,-0.0 0, 0.0 3,-0.0 0.155 72.3-151.1-175.4 -38.4 2.6 -19.2 -11.7 91 91 A E + 0 0 157 0, 0.0 -4,-0.0 0, 0.0 0, 0.0 0.388 58.5 62.6 61.2 154.8 6.2 -18.8 -10.5 92 92 A D - 0 0 128 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.698 57.8-153.0 65.0 125.8 8.9 -17.0 -12.5 93 93 A L - 0 0 136 2,-0.1 0, 0.0 -3,-0.0 0, 0.0 0.917 18.9-176.9 -91.1 -66.9 8.4 -13.3 -13.2 94 94 A S + 0 0 111 1,-0.1 0, 0.0 2,-0.0 0, 0.0 0.791 32.0 92.8 65.9 116.4 10.2 -12.7 -16.5 95 95 A G S S- 0 0 64 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.978 71.0 -28.0 165.3-160.4 10.3 -9.1 -17.7 96 96 A P - 0 0 139 0, 0.0 2,-0.5 0, 0.0 -2,-0.0 -0.094 59.7-107.4 -75.1 178.4 12.3 -5.8 -17.6 97 97 A S - 0 0 112 0, 0.0 2,-0.8 0, 0.0 0, 0.0 -0.956 21.4-166.1-116.1 123.2 14.6 -4.7 -14.8 98 98 A S 0 0 126 -2,-0.5 0, 0.0 1,-0.3 0, 0.0 -0.718 360.0 360.0-108.4 79.3 13.6 -1.9 -12.5 99 99 A G 0 0 121 -2,-0.8 -1,-0.3 0, 0.0 0, 0.0 0.622 360.0 360.0 97.3 360.0 16.8 -1.0 -10.8