==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 25-APR-06 2DN5 . COMPND 2 MOLECULE: GENERAL TRANSCRIPTION FACTOR II-I REPEAT DOMAIN- . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR Y.DOI-KATAYAMA,H.HIROTA,F.HAYASHI,S.YOKOYAMA,RIKEN . 89 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6592.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 44 49.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 5.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 25 28.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 142 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 59.8 -3.8 10.9 -18.4 2 2 A S - 0 0 122 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.918 360.0-122.5-138.7 163.2 -2.5 13.4 -15.8 3 3 A S + 0 0 126 -2,-0.3 2,-0.4 2,-0.1 0, 0.0 -0.844 67.9 55.8-110.3 146.2 0.6 15.4 -15.1 4 4 A G S S- 0 0 73 -2,-0.3 2,-0.2 2,-0.0 -2,-0.0 -0.958 95.0 -49.9 144.8-121.9 2.7 15.3 -12.0 5 5 A S - 0 0 123 -2,-0.4 2,-1.1 0, 0.0 3,-0.3 -0.700 39.0-139.9-160.8 100.4 4.4 12.3 -10.3 6 6 A S + 0 0 96 -2,-0.2 4,-0.2 1,-0.2 -2,-0.0 -0.490 51.7 134.4 -65.8 99.0 2.5 9.1 -9.6 7 7 A G > + 0 0 27 -2,-1.1 4,-2.9 2,-0.1 3,-0.4 0.744 57.6 63.4-112.8 -48.6 4.0 8.2 -6.2 8 8 A L H > S+ 0 0 40 -3,-0.3 4,-3.8 1,-0.2 5,-0.4 0.900 98.7 60.9 -43.9 -50.6 1.0 7.2 -4.0 9 9 A R H > S+ 0 0 76 1,-0.3 4,-2.2 2,-0.2 -1,-0.2 0.914 110.5 38.3 -42.2 -59.0 0.4 4.3 -6.4 10 10 A E H > S+ 0 0 118 -3,-0.4 4,-2.8 1,-0.2 5,-0.3 0.898 113.9 56.8 -60.8 -42.7 3.8 2.9 -5.6 11 11 A Q H X S+ 0 0 92 -4,-2.9 4,-1.8 1,-0.2 -2,-0.2 0.913 109.6 44.5 -54.5 -47.3 3.4 3.9 -2.0 12 12 A V H X S+ 0 0 0 -4,-3.8 4,-2.7 2,-0.2 5,-0.3 0.871 109.8 58.0 -65.1 -38.1 0.2 1.9 -1.7 13 13 A K H X S+ 0 0 57 -4,-2.2 4,-2.4 -5,-0.4 -2,-0.2 0.963 109.5 41.8 -55.3 -57.4 1.9 -0.9 -3.6 14 14 A E H X S+ 0 0 99 -4,-2.8 4,-3.2 2,-0.2 -1,-0.2 0.821 112.5 59.5 -59.5 -32.3 4.6 -1.2 -1.0 15 15 A L H X S+ 0 0 14 -4,-1.8 4,-2.9 -5,-0.3 -2,-0.2 0.993 108.9 38.6 -58.9 -67.9 2.0 -0.8 1.7 16 16 A F H X S+ 0 0 0 -4,-2.7 4,-2.2 1,-0.3 -1,-0.2 0.845 119.9 49.9 -51.4 -37.8 -0.1 -3.8 0.7 17 17 A N H X S+ 0 0 19 -4,-2.4 13,-2.6 -5,-0.3 4,-2.1 0.880 109.2 51.7 -69.0 -39.6 3.1 -5.6 0.1 18 18 A E H X S+ 0 0 83 -4,-3.2 4,-2.2 11,-0.3 -2,-0.2 0.924 109.5 49.2 -62.3 -47.1 4.4 -4.5 3.5 19 19 A K H X S+ 0 0 38 -4,-2.9 4,-3.2 1,-0.2 5,-0.3 0.947 108.2 54.0 -57.1 -52.3 1.3 -5.8 5.2 20 20 A Y H X S+ 0 0 8 -4,-2.2 4,-3.1 10,-0.3 6,-0.2 0.905 107.3 51.7 -47.8 -50.3 1.5 -9.1 3.5 21 21 A G H <>S+ 0 0 0 -4,-2.1 5,-2.6 9,-0.3 4,-0.5 0.947 112.5 43.6 -52.5 -56.6 5.1 -9.6 4.7 22 22 A E H ><5S+ 0 0 125 -4,-2.2 3,-1.0 1,-0.2 -1,-0.2 0.877 114.4 51.4 -57.2 -40.2 4.2 -8.9 8.3 23 23 A A H 3<5S+ 0 0 27 -4,-3.2 57,-0.3 1,-0.3 -1,-0.2 0.874 105.0 55.2 -64.5 -38.5 1.2 -11.1 7.9 24 24 A L T 3<5S- 0 0 32 -4,-3.1 -1,-0.3 -5,-0.3 -2,-0.2 0.570 119.6-116.7 -70.4 -8.4 3.4 -13.8 6.5 25 25 A G T < 5S+ 0 0 61 -3,-1.0 -3,-0.2 -4,-0.5 -2,-0.1 0.587 75.8 127.8 81.3 12.0 5.3 -13.4 9.7 26 26 A L < - 0 0 46 -5,-2.6 -1,-0.3 -6,-0.2 4,-0.1 -0.250 66.3-129.2 -90.0-178.8 8.3 -12.2 7.7 27 27 A N S S+ 0 0 168 -3,-0.1 -5,-0.1 -2,-0.1 -6,-0.1 0.026 84.0 69.4-119.9 22.4 10.4 -9.1 8.1 28 28 A R S S- 0 0 135 -7,-0.1 2,-0.2 -11,-0.1 -2,-0.2 -0.976 86.6-100.1-141.7 153.1 10.2 -8.1 4.5 29 29 A P - 0 0 57 0, 0.0 2,-0.4 0, 0.0 -11,-0.3 -0.524 37.8-169.5 -75.0 136.5 7.6 -6.7 2.1 30 30 A V - 0 0 49 -13,-2.6 -9,-0.3 -2,-0.2 -10,-0.3 -0.982 26.5-104.4-130.1 140.4 6.0 -9.3 -0.2 31 31 A L - 0 0 127 -2,-0.4 -17,-0.0 1,-0.1 -18,-0.0 -0.104 36.3-116.0 -56.0 158.3 3.8 -8.7 -3.2 32 32 A V - 0 0 7 -19,-0.1 2,-2.8 1,-0.0 3,-0.3 -0.910 10.8-141.4-106.2 119.0 0.1 -9.5 -2.8 33 33 A P >> + 0 0 37 0, 0.0 4,-2.3 0, 0.0 3,-1.2 -0.351 34.8 164.5 -75.0 61.3 -1.3 -12.4 -5.0 34 34 A Y H 3> S+ 0 0 29 -2,-2.8 4,-3.5 1,-0.3 5,-0.2 0.849 71.3 62.7 -45.6 -41.1 -4.5 -10.5 -5.5 35 35 A K H 3> S+ 0 0 167 -3,-0.3 4,-1.8 2,-0.2 -1,-0.3 0.916 111.6 36.6 -51.4 -48.6 -5.2 -12.9 -8.4 36 36 A L H <> S+ 0 0 104 -3,-1.2 4,-4.4 2,-0.2 3,-0.2 0.992 116.0 50.3 -67.7 -64.0 -5.2 -15.8 -5.9 37 37 A I H < S+ 0 0 11 -4,-2.3 6,-0.2 1,-0.2 -2,-0.2 0.833 109.0 58.5 -42.3 -38.2 -6.9 -13.9 -3.0 38 38 A R H < S+ 0 0 173 -4,-3.5 -1,-0.2 -5,-0.4 -2,-0.2 0.974 114.9 31.4 -56.9 -60.9 -9.4 -13.0 -5.6 39 39 A D H < S+ 0 0 141 -4,-1.8 -2,-0.2 1,-0.3 -1,-0.2 0.832 129.9 44.5 -66.6 -33.2 -10.4 -16.5 -6.5 40 40 A S >< + 0 0 51 -4,-4.4 3,-1.1 -5,-0.2 4,-0.5 -0.823 61.2 169.0-117.4 89.8 -9.6 -17.5 -3.0 41 41 A P T 3 S+ 0 0 105 0, 0.0 -1,-0.1 0, 0.0 -4,-0.1 0.527 80.0 62.3 -75.0 -6.1 -11.2 -14.9 -0.6 42 42 A D T 3 S+ 0 0 107 1,-0.1 3,-0.1 -3,-0.1 -5,-0.1 -0.076 86.4 77.6-107.8 30.0 -10.5 -17.3 2.2 43 43 A A S < S+ 0 0 5 -3,-1.1 39,-2.5 1,-0.4 38,-0.9 0.833 104.5 7.4-101.2 -53.2 -6.7 -17.1 1.6 44 44 A V E -A 80 0A 5 -4,-0.5 2,-0.4 36,-0.3 -1,-0.4 -0.994 68.0-136.6-136.2 140.9 -5.8 -13.8 3.2 45 45 A E E -A 79 0A 56 34,-4.4 34,-2.9 -2,-0.4 2,-0.5 -0.826 15.9-163.8-100.2 133.7 -7.8 -11.4 5.3 46 46 A V E +A 78 0A 28 -2,-0.4 2,-0.3 32,-0.2 32,-0.2 -0.973 20.8 150.7-120.5 127.5 -7.5 -7.7 4.6 47 47 A T E +A 77 0A 64 30,-2.7 30,-4.2 -2,-0.5 -2,-0.0 -0.907 42.7 58.2-146.0 171.3 -8.7 -5.1 7.1 48 48 A G S S+ 0 0 33 28,-0.3 28,-0.4 1,-0.3 27,-0.1 0.042 71.2 138.4 93.1 -24.8 -8.1 -1.5 8.3 49 49 A L - 0 0 32 26,-0.2 -1,-0.3 28,-0.2 2,-0.1 0.047 64.0 -83.9 -47.1 163.5 -8.7 -0.2 4.8 50 50 A P > - 0 0 19 0, 0.0 3,-0.7 0, 0.0 -1,-0.1 -0.417 50.5 -95.8 -75.0 150.1 -10.8 3.0 4.4 51 51 A D T 3 S+ 0 0 146 1,-0.2 17,-0.0 -2,-0.1 0, 0.0 -0.267 110.0 26.5 -63.1 150.6 -14.5 2.8 4.4 52 52 A D T 3 S+ 0 0 145 1,-0.2 -1,-0.2 -3,-0.1 13,-0.1 0.841 104.8 104.3 63.2 34.0 -16.2 2.8 1.1 53 53 A I < - 0 0 23 -3,-0.7 -1,-0.2 -4,-0.1 -4,-0.0 -0.914 56.5-155.4-151.0 118.4 -13.1 1.2 -0.3 54 54 A P - 0 0 53 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.159 30.2 -98.9 -75.0-163.0 -12.6 -2.5 -1.2 55 55 A F + 0 0 45 -6,-0.1 2,-0.3 -9,-0.0 -9,-0.0 -0.825 65.6 121.3-129.2 92.3 -9.3 -4.4 -1.4 56 56 A R - 0 0 141 -2,-0.4 5,-0.1 1,-0.2 4,-0.1 -0.849 68.2 -40.8-141.1 175.3 -7.9 -4.7 -4.9 57 57 A N - 0 0 70 -2,-0.3 4,-0.4 1,-0.2 -1,-0.2 -0.035 47.9-135.8 -39.3 136.3 -4.8 -3.9 -6.9 58 58 A P S S+ 0 0 2 0, 0.0 2,-1.5 0, 0.0 -1,-0.2 0.553 91.2 87.3 -75.0 -8.1 -3.6 -0.4 -6.0 59 59 A N S S+ 0 0 79 1,-0.2 -2,-0.1 -47,-0.1 3,-0.0 -0.543 92.9 35.8 -91.9 68.0 -3.2 0.2 -9.7 60 60 A T S S+ 0 0 92 -2,-1.5 -1,-0.2 -4,-0.1 -3,-0.1 0.128 86.4 108.2-179.8 -36.8 -6.7 1.4 -10.3 61 61 A Y - 0 0 17 -4,-0.4 2,-0.2 -5,-0.1 -52,-0.0 0.179 65.4-112.8 -49.9 177.7 -7.8 3.3 -7.3 62 62 A D > - 0 0 96 -3,-0.0 4,-4.3 1,-0.0 5,-0.4 -0.666 32.4 -91.6-114.3 170.6 -8.2 7.1 -7.5 63 63 A I H > S+ 0 0 111 -2,-0.2 4,-2.0 2,-0.2 5,-0.2 0.877 128.4 48.2 -46.2 -43.9 -6.3 10.0 -5.8 64 64 A H H >> S+ 0 0 125 2,-0.2 4,-4.1 3,-0.2 3,-0.8 0.998 117.1 36.8 -60.2 -72.8 -8.9 9.7 -3.0 65 65 A R H 3> S+ 0 0 91 1,-0.3 4,-3.8 2,-0.3 5,-0.4 0.904 115.7 56.2 -45.4 -51.4 -8.8 6.0 -2.4 66 66 A L H 3X S+ 0 0 15 -4,-4.3 4,-1.5 1,-0.2 -1,-0.3 0.879 116.5 37.3 -49.1 -42.6 -5.0 6.0 -3.1 67 67 A E H < S+ 0 0 0 -4,-3.8 3,-1.8 1,-0.3 7,-0.3 0.932 114.2 45.9 -53.1 -51.0 -5.6 3.8 1.8 70 70 A L H >< S+ 0 0 26 -4,-1.5 3,-1.4 -5,-0.4 4,-0.3 0.824 108.1 57.7 -61.5 -32.0 -2.4 5.6 2.6 71 71 A K T 3< S+ 0 0 181 -4,-3.2 -1,-0.3 1,-0.3 -2,-0.2 0.550 113.8 39.8 -74.6 -7.4 -4.3 7.5 5.3 72 72 A A T <> S+ 0 0 9 -3,-1.8 4,-4.3 -4,-0.5 3,-0.5 0.035 78.4 115.1-126.9 21.6 -5.1 4.0 6.7 73 73 A R T <4 S+ 0 0 146 -3,-1.4 -2,-0.1 1,-0.3 -3,-0.1 0.831 83.7 45.8 -60.7 -33.6 -1.7 2.5 6.1 74 74 A E T 4 S+ 0 0 170 -4,-0.3 -1,-0.3 1,-0.2 -2,-0.1 0.639 117.7 44.5 -82.8 -16.8 -1.3 2.2 9.9 75 75 A H T 4 S+ 0 0 144 -3,-0.5 -2,-0.2 -6,-0.2 -26,-0.2 0.805 89.1 99.6 -93.2 -38.1 -4.8 0.9 10.1 76 76 A V < + 0 0 2 -4,-4.3 2,-0.4 -28,-0.4 -28,-0.3 -0.262 52.8 177.1 -52.8 130.5 -4.5 -1.6 7.2 77 77 A R E -A 47 0A 161 -30,-4.2 -30,-2.7 2,-0.0 2,-0.4 -0.996 17.8-152.2-144.2 135.3 -3.9 -5.0 8.5 78 78 A M E -A 46 0A 10 -2,-0.4 2,-0.4 -32,-0.2 -32,-0.2 -0.860 7.3-169.2-110.0 142.8 -3.5 -8.4 6.8 79 79 A V E -A 45 0A 51 -34,-2.9 -34,-4.4 -2,-0.4 2,-0.8 -0.982 24.3-128.6-134.7 121.0 -4.3 -11.8 8.3 80 80 A I E +A 44 0A 39 -2,-0.4 -36,-0.3 -57,-0.3 3,-0.2 -0.562 29.2 176.0 -70.3 107.2 -3.3 -15.1 6.7 81 81 A I S S- 0 0 71 -38,-0.9 2,-0.3 -2,-0.8 -37,-0.2 0.960 74.4 -5.0 -76.0 -55.9 -6.6 -17.0 6.7 82 82 A N S S+ 0 0 116 -39,-2.5 -1,-0.3 2,-0.0 -40,-0.0 -0.838 110.8 71.8-146.5 102.5 -5.3 -20.1 4.8 83 83 A Q - 0 0 85 -2,-0.3 -39,-0.1 -3,-0.2 -40,-0.0 0.072 59.4-160.2-169.6 -60.0 -1.8 -20.1 3.4 84 84 A S - 0 0 111 1,-0.1 -60,-0.1 2,-0.0 -3,-0.0 0.705 11.7-143.2 61.7 126.9 0.9 -20.4 6.1 85 85 A G - 0 0 36 -61,-0.2 -1,-0.1 1,-0.1 -2,-0.0 -0.870 11.0-112.7-122.6 155.7 4.4 -19.4 5.2 86 86 A P - 0 0 115 0, 0.0 2,-0.3 0, 0.0 3,-0.1 -0.075 30.6-118.8 -75.0 179.8 7.9 -20.7 6.1 87 87 A S S S+ 0 0 102 1,-0.2 -61,-0.1 2,-0.1 -62,-0.0 -0.812 77.7 24.1-121.3 162.1 10.5 -19.0 8.2 88 88 A S 0 0 125 -2,-0.3 -1,-0.2 0, 0.0 -62,-0.0 0.952 360.0 360.0 47.1 85.2 14.0 -17.7 7.6 89 89 A G 0 0 95 -3,-0.1 -2,-0.1 0, 0.0 -63,-0.0 0.907 360.0 360.0 -86.8 360.0 13.9 -17.2 3.8