==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 26-APR-06 2DNK . COMPND 2 MOLECULE: BRUNO-LIKE 4, RNA BINDING PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 105 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7812.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 55 52.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 18.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 7.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 18 17.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 136 A G 0 0 115 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-159.4 20.4 -24.9 8.6 2 137 A S + 0 0 146 1,-0.2 2,-0.5 2,-0.0 3,-0.0 0.890 360.0 158.3 44.7 47.9 20.5 -22.4 5.8 3 138 A S + 0 0 118 1,-0.1 -1,-0.2 2,-0.0 0, 0.0 -0.893 39.6 33.7-107.1 128.0 23.2 -20.4 7.7 4 139 A G - 0 0 72 -2,-0.5 -1,-0.1 -3,-0.1 -2,-0.0 0.728 48.2-172.9 97.0 99.3 25.5 -18.0 5.9 5 140 A S - 0 0 106 -3,-0.0 -2,-0.0 1,-0.0 -3,-0.0 0.879 5.9-178.9 -87.0 -44.4 24.4 -16.1 2.9 6 141 A S + 0 0 125 1,-0.1 2,-0.2 2,-0.0 -1,-0.0 0.834 53.7 101.0 45.1 37.0 27.7 -14.6 1.9 7 142 A G + 0 0 44 2,-0.0 2,-0.7 0, 0.0 -1,-0.1 -0.656 42.8 171.0-154.0 92.2 25.8 -12.8 -0.9 8 143 A C + 0 0 113 -2,-0.2 2,-0.3 3,-0.0 -2,-0.0 -0.891 24.7 133.2-108.0 108.4 24.8 -9.2 -0.7 9 144 A L - 0 0 129 -2,-0.7 -2,-0.0 1,-0.0 0, 0.0 -0.995 68.2 -2.3-153.0 149.6 23.3 -7.8 -3.9 10 145 A R S S- 0 0 231 -2,-0.3 -1,-0.0 1,-0.1 -2,-0.0 0.798 84.5-163.9 37.2 35.8 20.4 -5.7 -5.0 11 146 A Q - 0 0 121 1,-0.1 -1,-0.1 0, 0.0 -3,-0.0 -0.095 28.1 -83.1 -48.6 143.9 19.4 -5.8 -1.4 12 147 A P - 0 0 98 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.049 50.7-105.8 -46.6 157.6 15.7 -4.9 -0.7 13 148 A P - 0 0 90 0, 0.0 2,-0.5 0, 0.0 53,-0.1 -0.017 27.1-107.5 -77.3-174.1 14.8 -1.1 -0.4 14 149 A S + 0 0 117 52,-0.0 2,-0.2 2,-0.0 0, 0.0 -0.858 67.5 105.8-125.0 96.4 13.9 0.8 2.7 15 150 A H - 0 0 59 -2,-0.5 80,-0.0 81,-0.0 79,-0.0 -0.828 40.8-166.4-171.4 129.1 10.2 1.8 3.0 16 151 A R + 0 0 140 -2,-0.2 47,-0.7 46,-0.1 2,-0.3 -0.231 62.8 97.9-112.2 41.8 7.3 0.6 5.1 17 152 A K E -A 62 0A 64 77,-0.3 77,-0.6 45,-0.2 2,-0.4 -0.908 50.3-161.5-128.8 156.6 4.6 2.2 3.1 18 153 A L E -AB 61 93A 2 43,-1.5 43,-2.1 -2,-0.3 2,-0.7 -0.978 13.2-141.8-142.8 126.5 2.1 1.1 0.4 19 154 A F E -AB 60 92A 59 73,-2.9 73,-2.2 -2,-0.4 2,-0.4 -0.777 21.7-170.4 -90.9 116.7 0.1 3.2 -2.1 20 155 A V E +AB 59 91A 1 39,-2.1 39,-1.7 -2,-0.7 71,-0.2 -0.899 14.9 153.1-110.4 134.5 -3.3 1.8 -2.7 21 156 A G E + B 0 90A 6 69,-2.5 69,-0.8 -2,-0.4 37,-0.2 -0.508 41.1 71.9-135.1-156.3 -5.7 3.1 -5.4 22 157 A M S S+ 0 0 95 34,-0.2 60,-0.2 -2,-0.2 63,-0.2 0.824 74.8 150.0 45.3 35.4 -8.6 2.1 -7.6 23 158 A L - 0 0 31 34,-1.7 2,-0.3 33,-0.2 -1,-0.2 -0.466 45.6-112.8 -93.7 167.9 -10.7 2.1 -4.5 24 159 A N - 0 0 44 -2,-0.1 2,-0.8 -3,-0.1 3,-0.3 -0.691 19.3-120.1-101.4 154.8 -14.4 2.9 -4.1 25 160 A K S S+ 0 0 141 -2,-0.3 30,-0.1 1,-0.2 -1,-0.0 -0.150 104.7 63.1 -84.1 41.3 -15.9 5.9 -2.4 26 161 A Q S S+ 0 0 154 -2,-0.8 -1,-0.2 57,-0.1 -3,-0.0 0.615 77.5 84.9-127.8 -48.8 -17.7 3.6 0.0 27 162 A Q - 0 0 59 -3,-0.3 2,-0.3 1,-0.1 -4,-0.0 -0.031 64.8-144.5 -55.3 163.9 -15.2 1.7 2.1 28 163 A S > - 0 0 57 1,-0.1 4,-2.2 -3,-0.0 5,-0.3 -0.859 30.4 -94.9-131.3 165.8 -13.7 3.3 5.2 29 164 A E H > S+ 0 0 80 -2,-0.3 4,-1.8 1,-0.2 -1,-0.1 0.875 124.8 52.1 -45.1 -44.4 -10.4 3.5 7.1 30 165 A D H >> S+ 0 0 92 2,-0.2 4,-2.0 1,-0.2 3,-0.8 0.982 105.5 51.3 -57.7 -62.4 -11.6 0.6 9.2 31 166 A D H 3> S+ 0 0 84 1,-0.3 4,-2.1 2,-0.2 -1,-0.2 0.892 115.7 42.8 -41.2 -52.3 -12.7 -1.7 6.4 32 167 A V H 3X S+ 0 0 6 -4,-2.2 4,-1.9 2,-0.2 5,-0.4 0.796 110.3 60.8 -67.0 -28.6 -9.2 -1.2 4.8 33 168 A R H X S+ 0 0 2 -4,-1.9 3,-3.2 1,-0.2 4,-0.6 0.984 118.6 47.8 -53.4 -72.2 -5.2 -5.4 5.0 37 172 A E H 3< S+ 0 0 74 -4,-1.9 -1,-0.2 -5,-0.4 -2,-0.2 0.778 89.6 89.3 -41.0 -30.3 -3.8 -6.3 8.4 38 173 A A T 3< S+ 0 0 73 -4,-2.8 -1,-0.3 -5,-0.3 -2,-0.2 0.774 106.3 19.0 -40.1 -30.4 -5.8 -9.5 7.9 39 174 A F T <4 S+ 0 0 116 -3,-3.2 2,-0.4 1,-0.4 -2,-0.2 0.795 133.7 21.3-105.4 -74.3 -2.6 -10.7 6.4 40 175 A G S < S- 0 0 1 -4,-0.6 -1,-0.4 28,-0.2 -2,-0.0 -0.845 87.9-101.1-105.5 137.9 0.4 -8.6 7.4 41 176 A N - 0 0 107 -2,-0.4 23,-0.9 -3,-0.1 2,-0.4 -0.040 36.8-136.2 -48.5 153.3 0.6 -6.4 10.5 42 177 A I E -C 63 0A 34 21,-0.2 21,-0.3 1,-0.1 3,-0.1 -0.950 18.4-169.3-121.3 138.6 0.1 -2.7 9.9 43 178 A E E S- 0 0 103 19,-0.6 2,-0.3 -2,-0.4 -1,-0.1 0.897 73.2 -11.6 -88.1 -49.0 2.1 0.2 11.4 44 179 A E E - 0 0 106 18,-0.1 18,-2.3 2,-0.0 -1,-0.3 -0.979 55.8-157.3-151.0 160.1 -0.1 3.1 10.4 45 180 A C E +C 61 0A 14 -2,-0.3 2,-0.3 16,-0.2 16,-0.2 -0.993 10.7 173.2-145.7 135.2 -3.0 3.9 8.1 46 181 A T E -C 60 0A 69 14,-2.2 14,-2.6 -2,-0.3 2,-0.2 -0.880 22.6-141.6-147.0 110.4 -4.2 7.2 6.5 47 182 A I E -C 59 0A 38 -2,-0.3 2,-0.4 12,-0.2 12,-0.3 -0.463 21.6-126.8 -71.7 138.9 -7.1 7.5 4.0 48 183 A L E -C 58 0A 54 10,-2.2 8,-1.1 -2,-0.2 10,-0.5 -0.729 27.2-179.4 -90.3 132.8 -6.6 10.0 1.2 49 184 A R E -C 55 0A 166 -2,-0.4 6,-0.2 6,-0.2 5,-0.1 -0.904 21.9-133.8-136.6 106.8 -9.3 12.6 0.6 50 185 A G > - 0 0 8 4,-0.5 3,-2.0 -2,-0.4 0, 0.0 -0.011 37.2 -94.5 -52.7 160.7 -9.0 15.2 -2.2 51 186 A P T 3 S+ 0 0 129 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.834 123.5 68.1 -45.6 -39.0 -9.7 18.8 -1.5 52 187 A D T 3 S- 0 0 127 2,-0.1 3,-0.1 1,-0.1 -2,-0.1 0.875 108.2-125.5 -51.0 -41.0 -13.3 18.2 -2.7 53 188 A G S < S+ 0 0 38 -3,-2.0 2,-0.4 1,-0.3 -1,-0.1 -0.176 75.3 109.1 121.5 -40.6 -13.9 16.0 0.3 54 189 A N S S- 0 0 79 1,-0.1 -4,-0.5 -5,-0.1 -1,-0.3 -0.570 85.2 -93.7 -74.5 125.6 -15.0 12.8 -1.3 55 190 A S E - C 0 49A 30 -2,-0.4 -6,-0.2 -6,-0.2 -1,-0.1 0.029 26.2-142.3 -36.6 137.7 -12.4 10.0 -1.0 56 191 A K E - 0 0 130 -8,-1.1 -34,-0.2 2,-0.2 -1,-0.2 0.181 47.4-101.4 -92.6 16.6 -10.2 9.9 -4.1 57 192 A G E S+ 0 0 6 -9,-0.3 -34,-1.7 1,-0.2 2,-0.3 0.912 90.2 101.4 65.7 43.5 -10.1 6.1 -4.0 58 193 A C E + C 0 48A 17 -10,-0.5 -10,-2.2 -37,-0.2 2,-0.3 -0.990 40.6 173.0-154.7 155.7 -6.7 6.0 -2.4 59 194 A A E -AC 20 47A 1 -39,-1.7 -39,-2.1 -2,-0.3 2,-0.6 -0.984 28.9-120.5-162.5 155.6 -5.0 5.5 1.0 60 195 A F E +AC 19 46A 58 -14,-2.6 -14,-2.2 -2,-0.3 2,-0.4 -0.908 31.2 178.6-107.8 119.0 -1.6 5.0 2.6 61 196 A V E -AC 18 45A 0 -43,-2.1 -43,-1.5 -2,-0.6 2,-0.3 -0.955 9.0-159.9-122.3 138.6 -1.0 1.8 4.5 62 197 A K E -A 17 0A 50 -18,-2.3 -19,-0.6 -2,-0.4 2,-0.3 -0.762 4.5-159.0-113.6 160.5 2.2 0.7 6.3 63 198 A Y E - C 0 42A 2 -47,-0.7 -21,-0.2 -21,-0.3 3,-0.1 -0.802 29.9-113.2-131.6 173.1 3.5 -2.7 7.4 64 199 A S S S- 0 0 52 -23,-0.9 2,-0.2 -2,-0.3 -1,-0.1 0.914 93.8 -8.7 -73.6 -44.8 5.9 -4.2 9.9 65 200 A S S > S- 0 0 67 -24,-0.2 4,-1.4 1,-0.1 -1,-0.1 -0.832 73.2 -97.8-143.2 179.9 8.3 -5.6 7.2 66 201 A H H >> S+ 0 0 81 -2,-0.2 4,-2.1 2,-0.2 3,-0.5 0.988 114.0 56.8 -67.2 -61.6 8.6 -6.2 3.4 67 202 A A H 3> S+ 0 0 60 1,-0.3 4,-2.3 2,-0.2 -1,-0.1 0.876 108.8 47.2 -34.2 -62.8 7.6 -9.8 3.3 68 203 A E H 3> S+ 0 0 63 1,-0.2 4,-2.0 2,-0.2 -1,-0.3 0.901 109.5 55.7 -49.1 -46.9 4.2 -9.0 5.0 69 204 A A H X S+ 0 0 10 -4,-2.5 4,-1.1 -5,-0.2 3,-0.8 0.984 116.2 33.1 -56.0 -66.1 -0.1 -6.9 -2.2 74 209 A N H 3< S+ 0 0 123 -4,-2.6 -1,-0.2 1,-0.3 -2,-0.2 0.869 119.7 54.1 -59.8 -37.8 -0.4 -10.1 -4.2 75 210 A A H 3< S+ 0 0 31 -4,-2.3 -1,-0.3 -5,-0.5 -2,-0.2 0.728 130.5 14.9 -69.1 -21.7 -3.2 -11.3 -1.9 76 211 A L H XX S+ 0 0 9 -4,-1.5 3,-3.0 -3,-0.8 4,-0.9 0.710 110.7 70.9-113.9 -74.4 -5.0 -8.1 -2.7 77 212 A H T 3< S+ 0 0 74 -4,-1.1 13,-0.2 -5,-0.4 -1,-0.2 -0.248 116.9 10.9 -51.8 126.6 -3.7 -6.2 -5.7 78 213 A G T 34 S+ 0 0 48 11,-1.5 -1,-0.3 2,-0.4 10,-0.1 0.359 116.4 84.8 84.1 -6.8 -4.5 -8.1 -8.8 79 214 A S T <4 S+ 0 0 80 -3,-3.0 -2,-0.2 -6,-0.3 -3,-0.1 0.929 94.2 10.3 -88.6 -73.8 -6.8 -10.3 -6.8 80 215 A Q S < S- 0 0 78 -4,-0.9 9,-2.6 -5,-0.1 2,-0.4 -0.361 70.4-123.3 -99.7-178.3 -10.2 -8.6 -6.5 81 216 A T - 0 0 62 7,-0.3 3,-0.2 -2,-0.1 7,-0.2 -0.882 26.5-121.6-134.3 102.7 -11.7 -5.6 -8.2 82 217 A M > - 0 0 4 -2,-0.4 3,-1.3 5,-0.2 5,-0.1 -0.012 49.2 -82.6 -40.0 137.7 -13.0 -2.7 -6.1 83 218 A P T 3 S+ 0 0 78 0, 0.0 2,-0.2 0, 0.0 -1,-0.2 -0.197 116.6 14.8 -48.7 124.9 -16.7 -2.0 -6.8 84 219 A G T 3 S+ 0 0 87 1,-0.3 2,-0.1 -3,-0.2 -2,-0.1 -0.280 103.9 99.4 103.6 -47.5 -17.1 0.2 -9.9 85 220 A A < - 0 0 30 -3,-1.3 -1,-0.3 -63,-0.2 4,-0.1 -0.463 58.8-154.6 -75.6 145.9 -13.5 -0.3 -11.2 86 221 A S S S+ 0 0 123 -2,-0.1 2,-0.4 -3,-0.1 -1,-0.1 0.618 75.4 76.0 -93.2 -16.3 -12.9 -2.8 -14.0 87 222 A S S S- 0 0 72 1,-0.1 -5,-0.2 -5,-0.1 3,-0.1 -0.780 92.3-101.8-100.0 141.2 -9.3 -3.3 -13.0 88 223 A S - 0 0 41 -2,-0.4 -7,-0.3 -7,-0.2 -1,-0.1 -0.104 60.0 -67.8 -55.0 155.2 -8.2 -5.4 -10.0 89 224 A L - 0 0 1 -9,-2.6 -11,-1.5 -13,-0.3 2,-0.5 -0.006 50.4-135.7 -43.2 148.6 -7.2 -3.6 -6.9 90 225 A V E +B 21 0A 44 -69,-0.8 -69,-2.5 -13,-0.2 2,-0.4 -0.941 32.8 160.4-118.8 113.1 -3.9 -1.6 -7.2 91 226 A V E +B 20 0A 3 -2,-0.5 2,-0.3 -71,-0.2 -71,-0.2 -0.925 8.8 155.8-136.3 110.3 -1.4 -1.8 -4.4 92 227 A K E -B 19 0A 118 -73,-2.2 -73,-2.9 -2,-0.4 2,-0.4 -0.879 52.8 -77.9-130.2 162.4 2.3 -0.9 -4.9 93 228 A F E -B 18 0A 58 -2,-0.3 -75,-0.3 -75,-0.3 2,-0.1 -0.435 51.9-126.2 -62.5 116.2 5.2 0.3 -2.7 94 229 A A - 0 0 2 -77,-0.6 -77,-0.3 -2,-0.4 2,-0.1 -0.428 23.1-136.0 -66.9 134.2 4.6 4.0 -2.0 95 230 A D - 0 0 101 -2,-0.1 3,-0.1 1,-0.1 -1,-0.1 -0.459 17.9-169.8 -88.7 163.2 7.6 6.2 -2.9 96 231 A T S S+ 0 0 115 1,-0.2 2,-1.0 -2,-0.1 3,-0.2 0.691 76.8 53.1-118.6 -44.2 9.0 9.0 -0.8 97 232 A D + 0 0 116 1,-0.2 -1,-0.2 2,-0.1 0, 0.0 -0.747 63.2 131.4-100.7 87.6 11.5 10.8 -3.0 98 233 A K S S+ 0 0 185 -2,-1.0 -1,-0.2 -3,-0.1 -2,-0.0 0.869 75.9 32.6 -98.8 -59.4 9.6 11.7 -6.1 99 234 A E S S+ 0 0 189 -3,-0.2 -2,-0.1 2,-0.0 -3,-0.0 0.959 111.3 70.6 -64.0 -53.0 10.2 15.4 -6.8 100 235 A S + 0 0 89 2,-0.1 -3,-0.0 1,-0.0 0, 0.0 -0.008 63.1 141.4 -58.7 169.9 13.8 15.3 -5.4 101 236 A G - 0 0 51 2,-0.1 -3,-0.1 1,-0.0 -2,-0.0 -0.896 64.4 -87.5 164.8 166.2 16.6 13.5 -7.3 102 237 A P + 0 0 139 0, 0.0 3,-0.2 0, 0.0 -2,-0.1 0.349 65.5 157.5 -77.0 7.4 20.3 13.5 -8.3 103 238 A S - 0 0 105 1,-0.2 2,-1.6 2,-0.1 -2,-0.1 0.033 58.3-100.1 -35.2 134.7 19.3 15.5 -11.4 104 239 A S 0 0 138 1,-0.2 -1,-0.2 0, 0.0 0, 0.0 -0.450 360.0 360.0 -65.9 89.9 22.3 17.3 -12.8 105 240 A G 0 0 125 -2,-1.6 -1,-0.2 -3,-0.2 -2,-0.1 0.451 360.0 360.0-113.3 360.0 21.5 20.8 -11.3