==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSLATION 26-APR-06 2DNL . COMPND 2 MOLECULE: CYTOPLASMIC POLYADENYLATION ELEMENT BINDING . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.TSUDA,T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, . 114 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8508.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 53.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 18.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 9.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 13.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 419 A G 0 0 133 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-170.7 5.7 20.8 3.8 2 420 A S - 0 0 118 0, 0.0 2,-0.6 0, 0.0 0, 0.0 -0.893 360.0-144.4-172.5 140.5 3.1 18.0 3.8 3 421 A S + 0 0 65 -2,-0.3 0, 0.0 1,-0.1 0, 0.0 -0.935 50.2 116.3-117.2 112.4 0.8 16.3 1.3 4 422 A G S S+ 0 0 8 -2,-0.6 4,-0.4 95,-0.1 96,-0.2 0.545 86.6 14.7-137.5 -47.1 -2.6 15.2 2.5 5 423 A S S S+ 0 0 98 94,-0.2 -2,-0.1 2,-0.1 3,-0.0 0.810 109.7 73.1-102.4 -45.5 -5.4 17.0 0.6 6 424 A S S S- 0 0 126 1,-0.2 -3,-0.1 0, 0.0 -1,-0.1 0.850 127.3 -67.7 -36.6 -47.9 -3.6 18.5 -2.4 7 425 A G - 0 0 38 55,-0.0 2,-0.6 0, 0.0 -1,-0.2 0.267 55.5-168.7 149.2 74.2 -3.4 14.9 -3.7 8 426 A S - 0 0 14 -4,-0.4 -4,-0.0 90,-0.3 50,-0.0 -0.728 7.9-163.9 -86.8 121.3 -1.3 12.3 -2.0 9 427 A R + 0 0 113 -2,-0.6 50,-0.3 50,-0.1 -1,-0.2 0.843 56.4 112.5 -70.4 -34.3 -0.9 9.1 -4.1 10 428 A K - 0 0 50 48,-0.1 2,-0.4 87,-0.1 48,-0.2 0.069 54.6-155.1 -37.5 148.6 0.3 7.2 -1.1 11 429 A V E -A 57 0A 0 46,-1.3 46,-2.5 86,-0.2 2,-0.5 -0.989 9.0-137.7-139.3 128.2 -2.1 4.5 0.1 12 430 A F E -AB 56 96A 38 84,-1.6 84,-3.0 -2,-0.4 2,-0.4 -0.715 21.6-170.3 -87.0 127.0 -2.5 2.9 3.5 13 431 A V E +AB 55 95A 1 42,-2.5 42,-1.6 -2,-0.5 2,-0.4 -0.969 7.8 176.6-121.7 129.5 -3.0 -0.9 3.6 14 432 A G E +AB 54 94A 17 80,-1.1 80,-2.6 -2,-0.4 40,-0.2 -0.948 60.0 42.0-136.7 116.6 -4.0 -2.9 6.6 15 433 A G + 0 0 32 38,-2.5 39,-0.2 -2,-0.4 38,-0.1 0.396 64.6 165.9 132.1 4.4 -4.7 -6.6 6.7 16 434 A L - 0 0 9 37,-0.5 -1,-0.1 1,-0.1 4,-0.1 -0.124 50.5 -82.9 -50.3 143.2 -1.9 -8.0 4.5 17 435 A P > - 0 0 5 0, 0.0 3,-1.0 0, 0.0 -1,-0.1 -0.018 30.8-124.5 -47.3 150.3 -1.4 -11.8 4.8 18 436 A P T 3 S+ 0 0 91 0, 0.0 -2,-0.1 0, 0.0 35,-0.1 0.485 110.8 44.3 -77.9 -2.8 0.7 -13.1 7.7 19 437 A D T 3 S+ 0 0 116 2,-0.1 2,-0.3 30,-0.0 68,-0.1 -0.168 90.4 113.3-133.7 39.7 2.9 -14.9 5.2 20 438 A I < - 0 0 7 -3,-1.0 2,-0.2 30,-0.1 33,-0.1 -0.756 45.2-154.9-112.4 159.9 3.4 -12.3 2.5 21 439 A D > - 0 0 55 -2,-0.3 4,-1.7 1,-0.1 28,-0.1 -0.609 34.4 -90.5-122.3-177.0 6.5 -10.3 1.4 22 440 A E H >> S+ 0 0 59 26,-0.2 4,-1.6 -2,-0.2 3,-0.9 0.995 120.5 44.7 -58.4 -73.8 7.3 -7.0 -0.3 23 441 A D H >> S+ 0 0 110 1,-0.3 4,-2.0 2,-0.2 3,-1.0 0.883 109.7 57.5 -35.7 -60.4 7.3 -8.1 -4.0 24 442 A E H 3> S+ 0 0 59 1,-0.3 4,-2.2 2,-0.2 -1,-0.3 0.884 104.9 51.3 -39.3 -53.2 4.1 -10.1 -3.4 25 443 A I H X S+ 0 0 58 -4,-2.0 3,-1.3 1,-0.3 4,-0.9 0.868 105.9 60.2 -49.3 -40.9 2.2 -7.7 -7.8 28 446 A S H 3< S+ 0 0 30 -4,-2.2 -1,-0.3 -5,-0.3 -2,-0.2 0.787 120.8 26.3 -59.4 -27.5 -1.1 -7.5 -5.9 29 447 A F T - 0 0 3 -2,-0.3 3,-1.3 16,-0.3 4,-0.4 -0.644 41.8-101.4 -99.5 157.3 5.9 0.3 5.5 40 458 A P T 3 S+ 0 0 65 0, 0.0 4,-0.3 0, 0.0 3,-0.1 0.728 125.9 46.4 -45.7 -24.1 6.7 2.5 8.6 41 459 A H T 3 S+ 0 0 90 1,-0.1 8,-0.2 3,-0.1 -2,-0.0 -0.417 86.3 93.4-119.1 55.3 9.2 -0.2 9.4 42 460 A K S < S+ 0 0 78 -3,-1.3 -1,-0.1 -2,-0.1 -5,-0.0 0.755 94.5 23.9-110.3 -45.5 11.0 -0.7 6.1 43 461 A A S S+ 0 0 86 -4,-0.4 -2,-0.1 -3,-0.1 -5,-0.0 0.944 122.4 49.0 -86.0 -62.3 13.9 1.7 6.2 44 462 A E S S+ 0 0 181 -4,-0.3 -3,-0.1 2,-0.0 2,-0.1 0.896 122.1 34.7 -43.9 -50.1 14.6 2.1 9.9 45 463 A S S S- 0 0 53 2,-0.1 3,-0.0 1,-0.1 0, 0.0 -0.294 71.4-142.7 -97.6-175.4 14.5 -1.6 10.4 46 464 A K + 0 0 197 -2,-0.1 -1,-0.1 3,-0.0 -2,-0.0 0.733 63.1 105.7-114.9 -50.6 15.5 -4.5 8.1 47 465 A S - 0 0 88 1,-0.2 -2,-0.1 2,-0.1 2,-0.1 0.001 61.0-146.2 -36.4 131.0 13.0 -7.3 8.5 48 466 A Y + 0 0 139 1,-0.1 -26,-0.2 2,-0.1 -1,-0.2 -0.210 66.0 107.9 -98.7 41.8 10.8 -7.4 5.4 49 467 A F S S- 0 0 115 -8,-0.2 4,-0.1 -28,-0.1 -28,-0.1 -0.811 70.6-134.0-123.8 90.7 7.6 -8.4 7.4 50 468 A P > - 0 0 12 0, 0.0 3,-1.9 0, 0.0 4,-0.1 -0.174 33.6-116.6 -45.5 103.5 5.1 -5.5 7.6 51 469 A P T 3 S+ 0 0 43 0, 0.0 -10,-0.1 0, 0.0 3,-0.1 -0.004 92.9 1.6 -43.5 146.4 4.1 -5.7 11.3 52 470 A K T 3 S- 0 0 193 1,-0.2 -37,-0.2 -3,-0.1 -36,-0.1 0.754 128.5 -76.1 41.1 26.7 0.5 -6.5 12.0 53 471 A G S < S+ 0 0 13 -3,-1.9 -38,-2.5 1,-0.2 -37,-0.5 0.953 95.0 122.2 50.5 88.8 0.3 -6.8 8.2 54 472 A Y E +A 14 0A 57 -40,-0.2 2,-0.3 -39,-0.2 -40,-0.2 -0.881 23.0 151.9-175.2 141.9 0.3 -3.2 7.0 55 473 A A E -A 13 0A 0 -42,-1.6 -42,-2.5 -2,-0.3 2,-0.4 -0.961 38.0 -99.9-163.0 175.4 2.2 -0.9 4.7 56 474 A F E -AC 12 38A 35 -18,-1.4 -18,-2.4 -2,-0.3 2,-0.5 -0.910 25.0-151.2-113.2 136.6 2.1 2.2 2.4 57 475 A L E -AC 11 37A 0 -46,-2.5 -46,-1.3 -2,-0.4 2,-0.7 -0.911 4.7-165.7-109.6 128.6 1.9 2.1 -1.4 58 476 A L - 0 0 66 -22,-2.4 -22,-0.4 -2,-0.5 2,-0.2 -0.813 11.6-157.1-115.3 90.9 3.3 4.9 -3.5 59 477 A F - 0 0 3 -2,-0.7 -24,-0.3 -50,-0.3 -50,-0.1 -0.454 19.3-131.1 -68.3 132.7 1.9 4.6 -7.1 60 478 A Q S S+ 0 0 140 -26,-2.3 2,-0.3 -2,-0.2 -1,-0.1 0.907 94.0 38.1 -48.4 -48.8 4.2 6.2 -9.7 61 479 A E S > S- 0 0 124 -27,-0.4 4,-0.6 1,-0.1 -2,-0.1 -0.770 74.5-138.5-107.5 152.7 1.1 8.0 -11.2 62 480 A E H >> S+ 0 0 102 -2,-0.3 4,-1.0 2,-0.2 3,-1.0 0.894 97.1 69.1 -73.6 -41.7 -1.9 9.4 -9.3 63 481 A S H >> S+ 0 0 89 1,-0.3 4,-1.4 2,-0.2 3,-1.0 0.910 92.0 59.0 -40.7 -59.4 -4.4 8.1 -11.9 64 482 A S H 3> S+ 0 0 13 1,-0.3 4,-1.9 2,-0.2 -1,-0.3 0.864 97.5 62.8 -38.9 -48.3 -3.8 4.5 -10.8 65 483 A V H XX S+ 0 0 14 -3,-1.0 4,-1.7 -4,-0.6 3,-0.5 0.918 101.1 50.3 -44.6 -55.8 -4.9 5.5 -7.3 66 484 A Q H S-D 78 0A 116 3,-3.0 3,-1.0 -2,-0.5 -2,-0.0 -0.779 78.0 -35.3-129.3 88.2 -18.5 -0.5 3.6 76 494 A D T 3 S- 0 0 128 -2,-0.4 2,-0.4 1,-0.3 3,-0.1 0.923 121.2 -48.3 66.5 45.7 -19.9 2.4 5.6 77 495 A G T 3 S+ 0 0 57 1,-0.3 -1,-0.3 0, 0.0 2,-0.1 -0.151 118.2 110.6 89.1 -41.1 -17.5 4.9 3.9 78 496 A K E < -D 75 0A 99 -3,-1.0 -3,-3.0 -2,-0.4 2,-0.3 -0.378 62.0-137.2 -68.7 145.3 -14.5 2.7 4.5 79 497 A L E -D 74 0A 32 16,-0.3 16,-0.6 -5,-0.2 2,-0.3 -0.788 19.7-176.2-106.4 149.2 -12.9 1.1 1.5 80 498 A Y E -DE 73 94A 63 -7,-1.6 -7,-2.9 -2,-0.3 2,-0.3 -0.984 4.6-165.5-147.7 132.8 -11.6 -2.5 1.2 81 499 A L E - E 0 93A 15 12,-2.1 12,-1.6 -2,-0.3 2,-0.5 -0.803 20.7-121.2-116.5 158.9 -9.8 -4.3 -1.6 82 500 A C E - E 0 92A 64 -2,-0.3 2,-0.4 10,-0.3 8,-0.1 -0.856 24.5-176.7-103.3 131.3 -9.2 -8.0 -2.2 83 501 A V E - E 0 91A 5 8,-2.0 8,-1.9 -2,-0.5 2,-0.2 -0.919 12.1-153.0-131.5 107.5 -5.6 -9.4 -2.5 84 502 A S - 0 0 73 -2,-0.4 5,-0.2 6,-0.3 6,-0.1 -0.541 13.9-165.6 -79.3 141.8 -5.0 -13.0 -3.3 85 503 A S - 0 0 17 3,-2.6 5,-0.1 -2,-0.2 -65,-0.1 -0.943 36.6-109.3-130.0 150.7 -1.8 -14.7 -2.1 86 504 A P S S+ 0 0 110 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 0.747 121.6 18.6 -45.6 -26.5 0.0 -17.9 -3.0 87 505 A T S S+ 0 0 94 1,-0.2 2,-0.2 -68,-0.1 -67,-0.1 0.780 122.1 53.2-109.9 -64.4 -1.0 -19.1 0.5 88 506 A I S S- 0 0 50 1,-0.1 -3,-2.6 -69,-0.1 -1,-0.2 -0.495 82.8-120.8 -78.2 145.9 -3.9 -16.9 1.8 89 507 A K - 0 0 172 1,-0.2 -6,-0.2 -5,-0.2 -1,-0.1 -0.298 61.6 -44.4 -80.3 168.2 -7.0 -16.5 -0.3 90 508 A D S S- 0 0 99 -8,-0.1 -6,-0.3 -6,-0.1 -1,-0.2 -0.022 71.0-159.6 -34.7 100.4 -8.4 -13.1 -1.6 91 509 A K E - E 0 83A 74 -8,-1.9 -8,-2.0 -3,-0.2 2,-1.8 -0.773 18.3-127.7 -95.6 133.6 -8.0 -11.1 1.6 92 510 A P E - E 0 82A 82 0, 0.0 -10,-0.3 0, 0.0 -2,-0.0 -0.546 34.9-168.9 -79.9 80.2 -10.0 -7.9 2.1 93 511 A V E - E 0 81A 0 -2,-1.8 -12,-2.1 -12,-1.6 2,-1.0 -0.336 27.4-109.8 -69.7 151.6 -7.2 -5.5 3.0 94 512 A Q E -BE 14 80A 56 -80,-2.6 -80,-1.1 -14,-0.2 2,-0.8 -0.735 34.0-168.3 -87.6 103.2 -8.1 -2.1 4.3 95 513 A I E +B 13 0A 2 -2,-1.0 -16,-0.3 -16,-0.6 -82,-0.2 -0.819 13.3 168.4 -96.6 107.7 -7.2 0.5 1.6 96 514 A R E -B 12 0A 143 -84,-3.0 -84,-1.6 -2,-0.8 2,-0.3 -0.834 34.2-133.0-123.3 93.5 -7.2 4.0 3.0 97 515 A P - 0 0 25 0, 0.0 -86,-0.2 0, 0.0 -87,-0.1 -0.201 37.9-106.7 -46.4 101.5 -5.7 6.5 0.6 98 516 A W + 0 0 109 -2,-0.3 2,-0.3 -88,-0.2 -90,-0.3 -0.007 60.8 154.6 -34.9 122.0 -3.4 8.5 2.9 99 517 A N - 0 0 83 -3,-0.1 2,-0.6 -92,-0.1 -94,-0.2 -0.991 52.4 -86.0-155.2 155.6 -5.1 11.9 3.4 100 518 A L - 0 0 106 -2,-0.3 2,-0.2 -96,-0.2 -96,-0.1 -0.515 51.3-116.7 -67.9 111.0 -5.3 14.8 5.9 101 519 A S + 0 0 113 -2,-0.6 2,-0.3 2,-0.0 -1,-0.1 -0.283 61.4 137.1 -51.9 111.3 -8.0 13.8 8.4 102 520 A D - 0 0 136 -2,-0.2 2,-0.7 2,-0.1 -3,-0.0 -0.989 52.9-128.6-157.0 157.5 -10.7 16.4 7.9 103 521 A S + 0 0 124 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.838 55.6 120.7-115.8 94.0 -14.5 16.8 7.7 104 522 A D - 0 0 122 -2,-0.7 2,-0.3 2,-0.0 -2,-0.1 -0.953 42.9-148.6-156.0 132.6 -15.4 18.9 4.6 105 523 A F + 0 0 198 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.798 20.0 168.5-104.5 145.1 -17.6 18.1 1.6 106 524 A V - 0 0 121 -2,-0.3 2,-0.6 2,-0.1 -2,-0.0 -0.928 21.4-151.0-158.1 129.6 -17.1 19.6 -1.9 107 525 A M + 0 0 180 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.905 43.6 113.6-107.1 119.8 -18.5 18.8 -5.3 108 526 A D - 0 0 155 -2,-0.6 2,-0.3 2,-0.0 -2,-0.1 -0.977 46.3-128.7-171.4 166.7 -16.4 19.4 -8.4 109 527 A S - 0 0 102 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.928 22.3-118.4-129.5 153.6 -14.5 17.8 -11.3 110 528 A G - 0 0 60 -2,-0.3 2,-1.0 1,-0.1 3,-0.1 -0.449 38.4 -91.5 -88.5 163.1 -11.0 18.1 -12.6 111 529 A P - 0 0 122 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.616 32.6-162.5 -77.0 101.0 -9.9 19.3 -16.1 112 530 A S S S+ 0 0 127 -2,-1.0 2,-0.2 2,-0.0 -2,-0.0 0.936 73.9 8.8 -45.9 -59.4 -9.7 16.2 -18.3 113 531 A S 0 0 111 -3,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.696 360.0 360.0-119.9 173.0 -7.5 18.0 -20.9 114 532 A G 0 0 130 -2,-0.2 -2,-0.0 0, 0.0 0, 0.0 -0.833 360.0 360.0-153.4 360.0 -5.7 21.3 -21.2