==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 26-APR-06 2DNM . COMPND 2 MOLECULE: SRP46 SPLICING FACTOR; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 103 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8292.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 53 51.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 18.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 8.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 4.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 14 13.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 139 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 155.2 15.0 30.6 -6.2 2 2 A S - 0 0 112 2,-0.0 0, 0.0 0, 0.0 0, 0.0 -0.951 360.0-109.4-127.4 112.8 12.1 29.1 -8.2 3 3 A S + 0 0 103 -2,-0.5 3,-0.0 1,-0.1 0, 0.0 -0.011 62.3 133.3 -37.1 130.2 11.7 25.3 -8.4 4 4 A G + 0 0 68 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.131 45.9 69.1-177.9 41.4 12.5 24.2 -11.9 5 5 A S - 0 0 91 2,-0.0 2,-0.3 4,-0.0 6,-0.2 -0.914 50.5-152.8-154.2 178.2 14.8 21.2 -12.0 6 6 A S + 0 0 104 -2,-0.3 4,-0.1 4,-0.1 0, 0.0 -0.988 55.5 48.4-157.7 158.2 15.1 17.5 -11.2 7 7 A G S S+ 0 0 66 2,-0.7 2,-0.8 -2,-0.3 -2,-0.0 -0.836 104.0 43.9 117.2 -96.0 17.6 14.8 -10.3 8 8 A P S S+ 0 0 134 0, 0.0 2,-0.3 0, 0.0 -1,-0.0 -0.071 115.8 54.0 -78.8 37.0 19.8 15.9 -7.3 9 9 A D - 0 0 63 -2,-0.8 -2,-0.7 -4,-0.0 2,-0.5 -0.964 65.4-146.6-166.8 150.4 16.8 17.2 -5.5 10 10 A V + 0 0 83 -2,-0.3 -4,-0.1 1,-0.2 0, 0.0 -0.874 14.3 176.4-129.1 99.8 13.3 16.2 -4.3 11 11 A D S S- 0 0 111 -2,-0.5 -1,-0.2 -6,-0.2 -5,-0.0 0.992 75.1 -41.3 -63.0 -64.4 10.7 18.9 -4.4 12 12 A G - 0 0 46 2,-0.0 -1,-0.1 0, 0.0 3,-0.1 -0.281 62.3-158.1-170.9 74.9 7.7 16.8 -3.3 13 13 A M - 0 0 57 1,-0.1 2,-0.1 48,-0.0 50,-0.1 -0.069 37.4 -89.0 -53.8 158.2 7.3 13.3 -4.8 14 14 A I - 0 0 24 50,-0.2 48,-1.9 48,-0.2 2,-0.4 -0.440 39.5-151.0 -73.0 144.2 3.8 11.8 -4.7 15 15 A T E -A 61 0A 42 46,-0.2 75,-0.8 -2,-0.1 2,-0.5 -0.970 7.6-165.3-122.3 130.2 2.8 9.8 -1.6 16 16 A L E -AB 60 89A 0 44,-3.0 44,-2.1 -2,-0.4 2,-0.4 -0.950 9.6-147.4-117.4 130.2 0.3 6.9 -1.6 17 17 A K E -AB 59 88A 37 71,-2.3 71,-2.0 -2,-0.5 2,-0.5 -0.801 8.8-164.6 -97.8 133.8 -1.3 5.4 1.5 18 18 A V E +AB 58 87A 2 40,-1.7 40,-1.3 -2,-0.4 3,-0.2 -0.933 11.6 179.5-122.2 109.4 -2.1 1.7 1.7 19 19 A D E + B 0 86A 48 67,-2.1 67,-0.6 -2,-0.5 38,-0.2 -0.322 57.2 53.1 -96.7-178.2 -4.5 0.5 4.5 20 20 A N S S+ 0 0 54 1,-0.2 2,-0.6 65,-0.2 -1,-0.2 0.853 73.4 155.5 59.4 35.7 -5.8 -2.9 5.3 21 21 A L - 0 0 29 35,-1.4 -1,-0.2 -3,-0.2 2,-0.0 -0.854 35.4-139.9-100.0 120.2 -2.2 -4.2 5.4 22 22 A T > - 0 0 67 -2,-0.6 3,-2.2 -3,-0.1 34,-0.1 -0.315 26.0-107.7 -73.8 158.9 -1.6 -7.3 7.5 23 23 A Y T 3 S+ 0 0 180 1,-0.3 -1,-0.1 -2,-0.0 33,-0.0 0.898 116.8 70.1 -52.0 -44.7 1.5 -7.7 9.7 24 24 A R T 3 S+ 0 0 208 2,-0.0 -1,-0.3 0, 0.0 -3,-0.0 0.760 81.3 102.9 -45.5 -26.1 2.8 -10.3 7.2 25 25 A T < - 0 0 29 -3,-2.2 -4,-0.0 4,-0.1 3,-0.0 -0.280 53.6-179.3 -61.7 145.1 3.2 -7.3 4.9 26 26 A S > - 0 0 44 1,-0.1 4,-2.6 0, 0.0 5,-0.4 -0.960 44.2 -97.9-145.2 161.4 6.8 -6.0 4.5 27 27 A P H > S+ 0 0 69 0, 0.0 4,-1.4 0, 0.0 5,-0.1 0.854 121.2 54.6 -45.5 -42.5 8.7 -3.2 2.7 28 28 A D H >> S+ 0 0 124 2,-0.2 4,-1.4 3,-0.2 3,-0.5 0.982 112.5 39.1 -57.7 -62.7 9.6 -5.7 -0.0 29 29 A S H >> S+ 0 0 45 1,-0.3 3,-1.6 2,-0.2 4,-1.5 0.960 115.8 50.7 -52.6 -59.2 6.1 -6.8 -0.9 30 30 A L H 3X S+ 0 0 2 -4,-2.6 4,-0.7 1,-0.3 -1,-0.3 0.776 111.1 52.4 -51.2 -26.9 4.6 -3.3 -0.5 31 31 A R H X S+ 0 0 0 -4,-0.7 3,-2.9 2,-0.1 4,-1.9 0.781 107.5 77.7-100.0 -37.7 3.4 -0.6 -7.0 35 35 A E T 3< S+ 0 0 46 -4,-1.6 4,-0.2 1,-0.3 -3,-0.1 0.745 82.4 75.2 -44.4 -24.4 6.8 -1.3 -8.6 36 36 A K T 34 S+ 0 0 166 -4,-0.5 -1,-0.3 2,-0.2 -2,-0.1 0.888 116.3 13.3 -57.4 -41.2 4.7 -3.2 -11.1 37 37 A Y T <4 S+ 0 0 102 -3,-2.9 2,-0.4 1,-0.3 -2,-0.2 0.846 142.1 9.0-100.9 -54.1 3.5 0.0 -12.7 38 38 A G S < S- 0 0 5 -4,-1.9 -1,-0.3 29,-0.1 -2,-0.2 -0.981 80.6-110.4-137.7 125.8 5.9 2.7 -11.3 39 39 A R - 0 0 169 -2,-0.4 2,-0.6 -4,-0.2 24,-0.6 0.069 35.0-117.3 -43.6 159.4 9.1 2.2 -9.2 40 40 A V E -C 62 0A 14 1,-0.2 22,-0.3 22,-0.2 3,-0.1 -0.925 15.5-161.5-111.1 119.4 8.9 3.2 -5.6 41 41 A G E S- 0 0 39 20,-0.9 2,-0.3 -2,-0.6 -1,-0.2 0.914 76.6 -7.9 -62.0 -44.4 11.2 6.0 -4.4 42 42 A D E - 0 0 91 19,-0.4 19,-2.4 2,-0.0 2,-0.4 -0.990 59.3-145.8-153.0 155.6 10.8 5.0 -0.7 43 43 A V E +C 60 0A 31 -2,-0.3 2,-0.4 17,-0.2 17,-0.2 -0.985 21.0 169.2-131.0 124.3 8.9 2.7 1.5 44 44 A Y E -C 59 0A 126 15,-2.5 15,-3.2 -2,-0.4 -2,-0.0 -0.989 16.8-165.9-135.5 143.1 7.7 3.4 5.1 45 45 A I - 0 0 30 -2,-0.4 13,-0.2 13,-0.2 10,-0.1 -0.813 21.0-141.6-132.5 93.4 5.3 1.7 7.5 46 46 A P - 0 0 5 0, 0.0 9,-0.9 0, 0.0 10,-0.2 -0.005 19.6-155.5 -48.0 154.4 4.3 3.7 10.5 47 47 A R B -D 54 0B 114 7,-0.3 5,-0.2 8,-0.1 4,-0.0 -0.734 28.2 -69.3-128.6 177.5 3.9 2.0 13.8 48 48 A E - 0 0 83 3,-1.1 -1,-0.1 5,-1.0 5,-0.1 -0.405 44.5-115.3 -70.8 143.7 2.1 2.4 17.1 49 49 A P S S+ 0 0 123 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 0.782 114.2 12.3 -47.2 -30.6 3.1 5.2 19.4 50 50 A H S S+ 0 0 133 1,-0.2 2,-0.3 3,-0.1 -2,-0.0 0.758 122.9 59.9-112.4 -59.8 4.2 2.6 21.9 51 51 A T S S- 0 0 58 1,-0.1 2,-2.1 2,-0.1 -3,-1.1 -0.592 79.4-130.3 -78.5 132.1 4.2 -0.8 20.2 52 52 A K + 0 0 171 -2,-0.3 -1,-0.1 -5,-0.2 -5,-0.0 -0.486 66.6 116.9 -81.5 71.3 6.6 -1.1 17.2 53 53 A A S S- 0 0 39 -2,-2.1 -5,-1.0 -5,-0.1 2,-0.5 -1.000 80.0 -86.9-142.4 141.4 4.0 -2.6 14.8 54 54 A P B -D 47 0B 47 0, 0.0 -7,-0.3 0, 0.0 4,-0.1 -0.213 37.8-150.4 -47.4 97.5 2.4 -1.4 11.5 55 55 A R - 0 0 129 -9,-0.9 -8,-0.1 -2,-0.5 3,-0.1 0.887 54.6 -80.4 -36.5 -60.5 -0.5 0.6 12.9 56 56 A G S S+ 0 0 21 1,-0.6 -35,-1.4 -10,-0.2 2,-0.3 0.200 105.2 62.8 179.3 -33.3 -2.6 -0.2 9.9 57 57 A F - 0 0 37 -38,-0.2 -1,-0.6 -37,-0.1 2,-0.3 -0.791 59.6-155.3-113.3 156.7 -1.7 2.1 7.0 58 58 A A E -A 18 0A 0 -40,-1.3 -40,-1.7 -2,-0.3 2,-0.4 -0.834 12.3-127.0-127.1 165.2 1.6 2.5 5.1 59 59 A F E -AC 17 44A 47 -15,-3.2 -15,-2.5 -2,-0.3 2,-0.4 -0.953 21.2-176.6-118.2 130.8 3.4 5.1 3.0 60 60 A V E -AC 16 43A 0 -44,-2.1 -44,-3.0 -2,-0.4 2,-0.3 -0.982 11.1-152.6-130.3 123.0 4.7 4.7 -0.5 61 61 A R E -A 15 0A 69 -19,-2.4 -20,-0.9 -2,-0.4 -19,-0.4 -0.651 12.4-162.7 -93.2 149.0 6.6 7.3 -2.5 62 62 A F E - C 0 40A 0 -48,-1.9 -48,-0.2 -2,-0.3 -22,-0.2 -0.711 21.6-137.3-123.2 174.9 6.6 7.4 -6.3 63 63 A H S S+ 0 0 108 -24,-0.6 2,-0.2 -2,-0.2 -1,-0.1 0.864 84.7 32.2 -97.8 -53.4 8.7 9.0 -9.1 64 64 A D S S- 0 0 68 -25,-0.2 4,-0.5 -51,-0.1 -50,-0.2 -0.470 72.9-126.3-100.5 174.3 6.1 10.4 -11.5 65 65 A R S S+ 0 0 156 -2,-0.2 4,-0.3 2,-0.1 -1,-0.1 0.321 103.2 56.3-101.4 5.1 2.6 11.7 -11.0 66 66 A R S > S+ 0 0 170 2,-0.1 4,-2.0 3,-0.1 3,-0.3 0.871 99.0 50.8 -98.7 -61.5 1.1 9.3 -13.5 67 67 A D H > S+ 0 0 54 1,-0.3 4,-2.7 2,-0.2 3,-0.4 0.900 111.2 52.1 -43.4 -51.8 2.1 5.8 -12.4 68 68 A A H > S+ 0 0 3 -4,-0.5 4,-2.5 1,-0.3 -1,-0.3 0.917 106.4 53.1 -53.0 -48.2 0.8 6.6 -8.9 69 69 A Q H > S+ 0 0 138 -3,-0.3 4,-1.5 -4,-0.3 -1,-0.3 0.854 112.3 46.9 -57.0 -36.2 -2.6 7.8 -10.3 70 70 A D H X S+ 0 0 104 -4,-2.0 4,-3.1 -3,-0.4 5,-0.3 0.983 112.3 45.2 -70.0 -60.4 -2.8 4.5 -12.2 71 71 A A H X S+ 0 0 0 -4,-2.7 4,-2.1 1,-0.2 5,-0.6 0.826 109.3 61.4 -53.0 -33.3 -2.0 2.1 -9.3 72 72 A E H X S+ 0 0 65 -4,-2.5 4,-1.2 -5,-0.3 -1,-0.2 0.967 115.5 28.4 -58.8 -56.6 -4.3 4.2 -7.1 73 73 A A H < S+ 0 0 71 -4,-1.5 -2,-0.2 -3,-0.2 -1,-0.1 0.954 122.3 51.9 -70.4 -52.1 -7.4 3.4 -9.2 74 74 A A H < S+ 0 0 57 -4,-3.1 -3,-0.2 -5,-0.2 -2,-0.2 0.954 120.7 32.2 -48.4 -62.8 -6.3 0.0 -10.5 75 75 A M H < S+ 0 0 21 -4,-2.1 -3,-0.2 -5,-0.3 -2,-0.2 0.996 98.8 84.4 -59.3 -74.6 -5.4 -1.3 -7.1 76 76 A D S < S+ 0 0 52 -4,-1.2 10,-0.2 11,-0.8 8,-0.0 -0.016 97.3 31.2 -34.4 111.1 -8.0 0.4 -4.9 77 77 A G S S+ 0 0 45 8,-1.0 2,-0.3 1,-0.3 -1,-0.2 0.797 92.6 125.8 101.8 39.2 -11.1 -1.8 -5.3 78 78 A A - 0 0 38 7,-0.4 2,-1.0 2,-0.1 7,-0.5 -0.781 65.4-106.4-123.8 168.3 -9.5 -5.2 -5.7 79 79 A E + 0 0 182 -2,-0.3 2,-0.4 5,-0.2 5,-0.2 -0.791 56.7 145.2 -99.4 95.6 -9.8 -8.6 -4.1 80 80 A L B > +E 83 0C 78 3,-2.2 3,-1.3 -2,-1.0 5,-0.2 -0.990 65.1 0.9-134.0 140.9 -6.7 -9.2 -2.0 81 81 A D T 3 S- 0 0 113 -2,-0.4 -1,-0.1 1,-0.3 3,-0.1 0.789 126.7 -64.9 56.2 27.8 -6.1 -10.9 1.3 82 82 A G T 3 S+ 0 0 68 1,-0.2 2,-0.3 -3,-0.0 -1,-0.3 0.858 121.8 71.1 64.7 35.7 -9.8 -11.7 1.3 83 83 A R B < S-E 80 0C 177 -3,-1.3 -3,-2.2 -5,-0.1 2,-0.9 -0.948 92.9 -84.7-163.3 179.0 -10.7 -8.1 1.5 84 84 A E - 0 0 130 -2,-0.3 -5,-0.2 -5,-0.2 -3,-0.1 -0.777 43.9-147.1-102.4 90.7 -10.8 -4.7 -0.3 85 85 A L - 0 0 13 -2,-0.9 2,-1.1 -7,-0.5 -8,-1.0 -0.251 10.0-132.7 -56.2 138.8 -7.3 -3.2 0.2 86 86 A R E +B 19 0A 124 -67,-0.6 -67,-2.1 -10,-0.2 2,-1.0 -0.719 33.5 169.5 -98.8 85.2 -7.4 0.6 0.4 87 87 A V E +B 18 0A 0 -2,-1.1 -11,-0.8 -69,-0.2 2,-0.3 -0.737 30.9 113.7 -99.4 87.2 -4.7 1.7 -2.0 88 88 A Q E -B 17 0A 73 -71,-2.0 -71,-2.3 -2,-1.0 3,-0.1 -0.855 68.6 -67.9-143.3 177.2 -5.1 5.5 -2.4 89 89 A V E -B 16 0A 69 -73,-0.3 -73,-0.2 -2,-0.3 -1,-0.1 -0.276 64.3 -84.6 -68.4 156.0 -3.4 8.8 -1.6 90 90 A A - 0 0 23 -75,-0.8 -1,-0.1 3,-0.1 -75,-0.0 0.001 32.8-122.2 -54.3 166.0 -3.0 10.0 2.0 91 91 A R S S+ 0 0 206 -3,-0.1 2,-0.2 3,-0.0 -1,-0.1 0.941 89.6 21.3 -78.1 -51.7 -5.9 11.8 3.8 92 92 A Y S S+ 0 0 168 1,-0.1 -2,-0.1 2,-0.1 -1,-0.0 -0.582 86.7 74.3-111.6 175.4 -4.0 15.0 4.7 93 93 A G - 0 0 68 -2,-0.2 -3,-0.1 -3,-0.0 -1,-0.1 0.953 68.8-133.8 84.4 74.9 -0.9 16.7 3.4 94 94 A R - 0 0 190 1,-0.1 -2,-0.1 2,-0.1 -3,-0.0 -0.197 5.1-136.0 -57.6 148.8 -1.7 18.3 0.0 95 95 A R S S+ 0 0 170 -80,-0.0 2,-0.2 2,-0.0 -1,-0.1 0.418 84.6 69.6 -86.7 1.0 0.9 17.7 -2.8 96 96 A D - 0 0 97 0, 0.0 2,-0.3 0, 0.0 -2,-0.1 -0.674 66.0-153.2-114.5 170.0 0.7 21.4 -3.7 97 97 A L - 0 0 135 -2,-0.2 2,-0.2 0, 0.0 -2,-0.0 -0.998 21.4-110.2-146.0 146.5 1.8 24.7 -2.0 98 98 A S + 0 0 102 -2,-0.3 3,-0.0 1,-0.0 0, 0.0 -0.475 65.0 90.2 -76.1 145.0 0.6 28.3 -2.1 99 99 A G + 0 0 53 -2,-0.2 2,-0.2 0, 0.0 -1,-0.0 -0.964 67.0 25.7 168.6-150.7 2.9 30.9 -3.8 100 100 A P + 0 0 127 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.188 54.1 178.6 -45.5 101.6 3.7 32.6 -7.1 101 101 A S S S- 0 0 125 -2,-0.2 -3,-0.0 -3,-0.0 0, 0.0 0.956 80.7 -3.9 -73.8 -53.3 0.3 32.3 -8.9 102 102 A S 0 0 114 0, 0.0 -1,-0.0 0, 0.0 0, 0.0 0.772 360.0 360.0-107.8 -45.1 1.3 34.2 -12.1 103 103 A G 0 0 108 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 -0.101 360.0 360.0 79.0 360.0 4.9 35.3 -11.4