==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 26-APR-06 2DNO . COMPND 2 MOLECULE: TRINUCLEOTIDE REPEAT CONTAINING 4 VARIANT; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 102 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7140.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 57.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 18.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 7.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 14.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 59 A G 0 0 102 0, 0.0 3,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 78.6 -12.0 2.2 -24.1 2 60 A S + 0 0 133 1,-0.1 2,-0.3 2,-0.0 0, 0.0 0.861 360.0 79.6 44.9 41.9 -8.4 2.6 -23.2 3 61 A S + 0 0 106 4,-0.0 2,-0.2 0, 0.0 -1,-0.1 -0.873 65.0 45.6-174.0 138.9 -9.4 5.5 -21.0 4 62 A G S S+ 0 0 65 2,-0.6 -2,-0.0 -2,-0.3 0, 0.0 -0.519 100.6 56.7 126.2 -66.1 -10.9 6.2 -17.6 5 63 A S S S+ 0 0 75 -2,-0.2 2,-0.2 3,-0.0 66,-0.0 0.966 93.8 73.3 -63.9 -54.8 -9.1 4.0 -15.1 6 64 A S S S+ 0 0 92 1,-0.1 -2,-0.6 2,-0.0 0, 0.0 -0.446 72.1 78.6 -65.6 126.0 -5.6 5.3 -15.9 7 65 A G + 0 0 74 -2,-0.2 2,-0.3 -4,-0.1 -1,-0.1 0.435 47.9 160.7 135.0 78.3 -5.1 8.8 -14.5 8 66 A S - 0 0 53 2,-0.0 2,-0.3 0, 0.0 59,-0.0 -0.923 31.2-128.0-123.7 148.3 -4.4 9.3 -10.8 9 67 A R S S+ 0 0 238 -2,-0.3 81,-0.1 1,-0.1 3,-0.1 -0.670 71.2 66.8 -94.3 148.2 -2.9 12.3 -8.9 10 68 A G - 0 0 26 -2,-0.3 2,-2.2 1,-0.1 81,-0.1 0.773 63.3-142.4 107.2 78.1 0.0 12.0 -6.5 11 69 A E + 0 0 150 79,-0.1 2,-0.3 1,-0.0 -1,-0.1 -0.462 58.6 121.8 -70.6 81.0 3.3 11.1 -8.1 12 70 A D - 0 0 74 -2,-2.2 79,-0.3 1,-0.1 -1,-0.0 -0.871 51.1-157.4-149.6 111.2 4.5 8.8 -5.2 13 71 A R S S+ 0 0 115 -2,-0.3 47,-0.3 77,-0.1 -1,-0.1 0.943 71.8 92.4 -49.6 -56.8 5.5 5.2 -5.6 14 72 A K - 0 0 69 45,-0.2 77,-1.5 76,-0.1 2,-0.3 0.020 64.5-160.0 -39.4 144.6 4.9 4.5 -1.9 15 73 A L E -AB 58 90A 0 43,-1.9 43,-1.7 75,-0.3 2,-0.6 -0.948 16.2-129.9-134.1 154.4 1.3 3.3 -1.1 16 74 A F E -AB 57 89A 61 73,-2.9 73,-1.9 -2,-0.3 2,-0.3 -0.904 25.0-168.6-109.2 111.5 -0.9 3.1 1.9 17 75 A V E +AB 56 88A 0 39,-2.5 39,-1.5 -2,-0.6 71,-0.2 -0.759 9.9 173.7 -99.8 144.3 -2.6 -0.2 2.6 18 76 A G E +A 55 0A 5 69,-2.3 69,-0.3 -2,-0.3 37,-0.2 -0.682 48.3 59.0-134.3-171.8 -5.3 -0.8 5.1 19 77 A M S S+ 0 0 67 35,-0.7 2,-0.3 -2,-0.2 60,-0.2 0.889 72.2 162.4 52.9 42.6 -7.8 -3.4 6.4 20 78 A L - 0 0 15 34,-0.5 2,-0.3 -3,-0.2 -1,-0.2 -0.670 28.2-141.7 -94.6 148.9 -4.8 -5.6 7.3 21 79 A G - 0 0 16 -2,-0.3 3,-0.5 1,-0.1 33,-0.1 -0.778 25.5-113.4-110.8 155.4 -5.1 -8.5 9.7 22 80 A K S S+ 0 0 167 -2,-0.3 -1,-0.1 1,-0.2 30,-0.1 0.802 118.4 58.4 -51.9 -30.1 -2.6 -9.8 12.4 23 81 A Q S S+ 0 0 151 57,-0.1 -1,-0.2 29,-0.1 2,-0.2 0.935 93.7 73.4 -66.5 -47.9 -2.3 -12.9 10.2 24 82 A Q + 0 0 33 -3,-0.5 2,-0.3 4,-0.1 28,-0.1 -0.509 66.3 168.1 -72.2 132.1 -1.1 -10.9 7.2 25 83 A T > - 0 0 49 -2,-0.2 4,-2.1 -5,-0.0 5,-0.5 -0.823 55.4 -73.5-136.8 175.5 2.5 -9.6 7.5 26 84 A D H > S+ 0 0 64 -2,-0.3 4,-2.6 1,-0.3 5,-0.3 0.826 131.1 55.2 -37.5 -41.3 5.2 -8.1 5.4 27 85 A E H > S+ 0 0 142 2,-0.2 4,-2.9 3,-0.2 5,-0.3 0.974 113.5 37.1 -59.3 -58.5 5.7 -11.5 3.9 28 86 A D H > S+ 0 0 62 -3,-0.3 4,-2.5 2,-0.2 5,-0.3 0.982 120.7 45.2 -58.1 -62.2 2.0 -11.9 2.8 29 87 A V H X S+ 0 0 1 -4,-2.1 4,-2.2 2,-0.2 5,-0.3 0.905 115.6 49.3 -48.4 -48.5 1.5 -8.3 1.7 30 88 A R H >X S+ 0 0 129 -4,-2.6 4,-2.8 -5,-0.5 3,-0.5 0.972 117.6 37.5 -56.6 -59.8 4.9 -8.3 -0.1 31 89 A K H 3< S+ 0 0 166 -4,-2.9 -1,-0.2 -5,-0.3 -2,-0.2 0.694 119.5 52.4 -66.6 -18.0 4.2 -11.6 -2.0 32 90 A M H 3< S+ 0 0 20 -4,-2.5 -1,-0.2 -5,-0.3 -2,-0.2 0.711 117.2 35.8 -88.9 -24.0 0.6 -10.4 -2.3 33 91 A F H X< S+ 0 0 0 -4,-2.2 3,-1.7 -3,-0.5 -2,-0.2 0.652 102.6 73.5-100.4 -22.0 1.6 -7.1 -3.8 34 92 A E G >< S+ 0 0 54 -4,-2.8 3,-3.1 -5,-0.3 -3,-0.1 0.898 80.4 73.0 -58.4 -42.2 4.6 -8.3 -5.8 35 93 A P G 3 S+ 0 0 88 0, 0.0 -1,-0.3 0, 0.0 -2,-0.1 0.657 101.2 47.0 -47.9 -15.3 2.2 -9.9 -8.3 36 94 A F G < S- 0 0 59 -3,-1.7 33,-0.5 1,-0.4 2,-0.2 -0.074 132.7 -35.2-119.0 31.1 1.6 -6.3 -9.4 37 95 A G S < S- 0 0 7 -3,-3.1 2,-0.7 31,-0.1 -1,-0.4 -0.584 77.2 -65.6 134.3 163.2 5.2 -5.2 -9.6 38 96 A T - 0 0 68 -2,-0.2 23,-1.7 -3,-0.1 2,-0.2 -0.751 47.8-145.3 -88.1 115.0 8.6 -5.5 -7.9 39 97 A I E +C 60 0A 8 -2,-0.7 21,-0.3 21,-0.2 3,-0.1 -0.566 22.8 174.3 -80.5 140.8 8.5 -4.2 -4.4 40 98 A D E S+ 0 0 101 19,-3.2 2,-0.4 1,-0.3 20,-0.2 0.743 70.3 25.7-111.2 -43.9 11.7 -2.5 -3.0 41 99 A E E +C 59 0A 114 18,-1.4 18,-2.2 2,-0.0 2,-0.4 -0.983 62.4 172.3-130.5 123.1 10.7 -1.2 0.4 42 100 A C E +C 58 0A 28 -2,-0.4 2,-0.4 16,-0.2 16,-0.2 -0.966 2.6 173.7-134.3 118.0 7.9 -2.6 2.5 43 101 A T E -C 57 0A 68 14,-1.9 14,-2.7 -2,-0.4 2,-0.4 -0.985 17.1-149.1-127.6 131.5 7.2 -1.6 6.1 44 102 A V E -C 56 0A 10 -2,-0.4 2,-0.8 12,-0.2 12,-0.2 -0.790 16.4-128.9-100.4 140.3 4.3 -2.6 8.3 45 103 A L E +C 55 0A 61 10,-2.2 8,-1.1 -2,-0.4 9,-0.6 -0.775 42.8 157.2 -90.8 108.5 2.8 -0.4 11.0 46 104 A R E -C 52 0A 123 -2,-0.8 6,-0.2 6,-0.2 4,-0.1 -0.829 30.7-132.5-127.2 165.8 2.6 -2.3 14.3 47 105 A G > - 0 0 30 4,-1.3 3,-0.6 -2,-0.3 -1,-0.1 0.170 50.0 -66.7 -94.6-146.2 2.4 -1.4 18.0 48 106 A P T 3 S+ 0 0 125 0, 0.0 2,-0.7 0, 0.0 -2,-0.0 0.912 129.1 53.3 -75.3 -45.6 4.3 -2.6 21.0 49 107 A D T 3 S- 0 0 132 1,-0.1 3,-0.1 2,-0.1 -2,-0.0 -0.129 118.2-107.9 -83.5 39.9 2.9 -6.2 21.0 50 108 A G < + 0 0 57 -2,-0.7 2,-0.5 -3,-0.6 -1,-0.1 0.808 68.5 158.9 36.6 39.7 3.9 -6.6 17.4 51 109 A T - 0 0 78 1,-0.0 -4,-1.3 2,-0.0 2,-1.0 -0.827 50.8-116.1 -97.5 123.8 0.2 -6.4 16.6 52 110 A S E - C 0 46A 16 -2,-0.5 -6,-0.2 1,-0.2 -30,-0.1 -0.378 22.6-158.5 -59.0 96.6 -0.7 -5.4 13.0 53 111 A K E - 0 0 162 -8,-1.1 -1,-0.2 -2,-1.0 -7,-0.1 0.820 52.2 -94.4 -46.5 -34.3 -2.5 -2.1 13.7 54 112 A G E S+ 0 0 19 -9,-0.6 -35,-0.7 1,-0.4 -34,-0.5 0.655 93.4 79.7 121.2 33.4 -4.1 -2.7 10.3 55 113 A C E +AC 18 45A 22 -10,-0.5 -10,-2.2 -37,-0.2 -1,-0.4 -0.967 43.7 179.9-164.5 148.3 -2.0 -0.8 7.8 56 114 A A E -AC 17 44A 0 -39,-1.5 -39,-2.5 -2,-0.3 2,-0.4 -0.987 22.4-129.4-155.1 143.6 1.3 -1.1 5.9 57 115 A F E -AC 16 43A 41 -14,-2.7 -14,-1.9 -2,-0.3 2,-0.4 -0.778 21.4-165.0 -97.8 137.7 3.3 1.0 3.4 58 116 A V E -AC 15 42A 0 -43,-1.7 -43,-1.9 -2,-0.4 2,-0.6 -0.975 8.4-163.1-125.5 135.7 4.5 -0.5 0.1 59 117 A K E - C 0 41A 72 -18,-2.2 -19,-3.2 -2,-0.4 -18,-1.4 -0.880 13.9-160.8-120.7 99.5 7.1 0.9 -2.3 60 118 A F E - C 0 39A 0 -2,-0.6 -21,-0.2 -47,-0.3 -46,-0.1 -0.159 33.4-106.3 -70.5 169.5 7.0 -0.6 -5.7 61 119 A Q S S+ 0 0 85 -23,-1.7 2,-0.3 1,-0.2 -22,-0.1 0.831 100.1 4.0 -66.3 -32.8 9.9 -0.5 -8.2 62 120 A T S > S- 0 0 62 1,-0.1 4,-1.7 -24,-0.1 3,-0.2 -0.972 73.2-110.9-150.0 161.8 8.1 2.1 -10.2 63 121 A H H >> S+ 0 0 46 -2,-0.3 4,-1.9 1,-0.2 3,-0.9 0.976 113.3 59.0 -57.6 -60.3 4.9 4.2 -10.2 64 122 A A H 3> S+ 0 0 71 1,-0.3 4,-1.6 2,-0.2 -1,-0.2 0.834 109.6 46.7 -37.0 -43.8 3.3 2.4 -13.2 65 123 A E H 3> S+ 0 0 75 2,-0.2 4,-1.5 -3,-0.2 -1,-0.3 0.881 107.4 57.3 -69.3 -39.2 3.6 -0.8 -11.1 66 124 A A H X>S+ 0 0 0 -4,-1.5 3,-2.1 -33,-0.5 4,-1.7 0.970 114.4 46.5 -50.8 -66.2 -1.9 -3.1 -7.7 70 128 A I H 3X5S+ 0 0 12 -4,-1.4 4,-2.0 1,-0.3 -2,-0.2 0.912 100.8 66.8 -42.4 -57.3 -4.4 -0.5 -6.4 71 129 A N H 3<5S+ 0 0 86 -4,-3.1 -1,-0.3 2,-0.1 -2,-0.2 0.806 127.9 7.7 -34.5 -39.8 -6.4 -0.6 -9.7 72 130 A T H <<5S+ 0 0 66 -3,-2.1 -2,-0.2 -4,-1.1 -3,-0.1 0.777 127.7 54.3-108.4 -71.9 -7.2 -4.2 -8.6 73 131 A L H ><5S+ 0 0 5 -4,-1.7 3,-2.2 -5,-0.2 4,-0.4 0.801 86.2 104.7 -34.3 -39.0 -6.0 -4.9 -5.0 74 132 A H T 3< - 0 0 5 -2,-0.5 3,-0.6 -60,-0.2 -59,-0.0 0.058 45.4 -69.9 -39.3 148.6 -8.8 -10.5 4.4 80 138 A P T 3 S+ 0 0 101 0, 0.0 -57,-0.1 0, 0.0 -1,-0.1 -0.111 118.6 1.8 -45.8 133.9 -10.0 -12.7 7.3 81 139 A G T 3 S+ 0 0 94 1,-0.2 2,-0.4 -3,-0.2 -2,-0.1 0.941 95.3 142.9 48.0 59.4 -11.9 -10.8 9.9 82 140 A A < - 0 0 18 -3,-0.6 -1,-0.2 1,-0.2 -61,-0.1 -0.938 49.9-143.6-135.2 112.1 -11.8 -7.5 8.1 83 141 A S S S+ 0 0 128 -2,-0.4 -1,-0.2 2,-0.0 2,-0.1 0.870 85.7 11.4 -32.0 -75.7 -14.7 -5.0 8.0 84 142 A S S S- 0 0 65 1,-0.2 3,-0.1 3,-0.0 -5,-0.1 -0.339 97.0 -80.5 -99.6-176.9 -14.1 -3.9 4.4 85 143 A S S S- 0 0 20 1,-0.2 2,-0.6 -7,-0.1 -7,-0.3 -0.193 72.5 -55.4 -78.3 174.3 -11.9 -5.2 1.6 86 144 A L - 0 0 0 -9,-3.0 -11,-2.9 1,-0.1 2,-1.0 -0.327 58.3-147.5 -54.5 101.5 -8.2 -4.6 1.2 87 145 A V + 0 0 43 -2,-0.6 -69,-2.3 -69,-0.3 2,-0.5 -0.643 24.9 174.5 -78.8 102.5 -8.1 -0.8 1.2 88 146 A V E +B 17 0A 0 -2,-1.0 2,-0.3 -71,-0.2 -71,-0.2 -0.947 9.5 145.4-115.7 121.9 -5.2 0.1 -1.2 89 147 A K E -B 16 0A 114 -73,-1.9 -73,-2.9 -2,-0.5 -22,-0.0 -0.987 53.7 -80.9-154.7 143.3 -4.5 3.8 -2.0 90 148 A F E -B 15 0A 37 -2,-0.3 -75,-0.3 -75,-0.3 2,-0.2 0.048 50.8-123.9 -39.5 149.2 -1.5 5.9 -2.7 91 149 A A - 0 0 6 -77,-1.5 2,-0.4 -79,-0.3 -1,-0.1 -0.545 13.2-136.6 -98.5 165.8 0.3 7.1 0.4 92 150 A D - 0 0 136 -2,-0.2 2,-0.5 -77,-0.1 -77,-0.0 -0.987 10.2-158.6-128.2 130.2 1.2 10.7 1.5 93 151 A T - 0 0 97 -2,-0.4 -2,-0.0 1,-0.1 -79,-0.0 -0.910 38.8 -90.4-110.8 131.9 4.5 11.9 2.9 94 152 A E - 0 0 170 -2,-0.5 2,-0.2 1,-0.1 -1,-0.1 0.004 54.0-172.0 -36.3 131.5 4.8 15.0 5.0 95 153 A K - 0 0 169 2,-0.0 2,-0.4 -3,-0.0 -1,-0.1 -0.612 26.4-119.0-122.1-177.2 5.5 18.0 2.7 96 154 A E + 0 0 199 -2,-0.2 2,-0.4 2,-0.0 -2,-0.0 -0.776 39.2 163.0-130.8 88.3 6.5 21.6 3.0 97 155 A S + 0 0 105 -2,-0.4 -2,-0.0 3,-0.0 3,-0.0 -0.878 23.9 89.5-109.4 137.7 3.9 24.0 1.4 98 156 A G S S- 0 0 60 -2,-0.4 -2,-0.0 0, 0.0 0, 0.0 -0.945 72.0 -20.9 163.0 177.7 3.7 27.7 2.1 99 157 A P - 0 0 122 0, 0.0 3,-0.2 0, 0.0 0, 0.0 -0.051 44.7-148.1 -45.6 143.9 4.8 31.2 1.2 100 158 A S S S+ 0 0 135 1,-0.3 2,-0.6 2,-0.1 -3,-0.0 0.917 87.8 29.7 -82.9 -49.0 8.1 31.5 -0.8 101 159 A S 0 0 118 1,-0.2 -1,-0.3 0, 0.0 0, 0.0 -0.859 360.0 360.0-117.9 96.7 9.3 34.8 0.5 102 160 A G 0 0 118 -2,-0.6 -1,-0.2 -3,-0.2 -2,-0.1 0.381 360.0 360.0 152.0 360.0 8.2 35.5 4.1