==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 26-APR-06 2DNR . COMPND 2 MOLECULE: SYNAPTOJANIN-1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 91 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6334.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 57 62.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 24.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 9.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 11.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 17.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 886 A G 0 0 140 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 86.1 -14.3 15.0 0.4 2 887 A S - 0 0 72 82,-0.0 2,-0.4 3,-0.0 80,-0.0 -0.937 360.0-169.6-147.3 119.9 -11.7 17.4 1.8 3 888 A S + 0 0 127 -2,-0.3 0, 0.0 1,-0.0 0, 0.0 -0.902 54.5 41.4-112.6 137.3 -10.0 20.2 -0.1 4 889 A G + 0 0 63 -2,-0.4 2,-0.2 1,-0.2 -1,-0.0 0.577 52.3 152.5 97.8 113.0 -7.0 22.1 1.2 5 890 A S - 0 0 95 2,-0.1 2,-1.5 79,-0.0 -1,-0.2 -0.670 36.1-142.1-174.3 113.4 -4.0 20.6 3.0 6 891 A S S S+ 0 0 142 -2,-0.2 2,-0.3 53,-0.1 52,-0.0 -0.616 82.5 23.5 -82.6 87.0 -0.4 21.8 3.3 7 892 A G S S- 0 0 45 -2,-1.5 -2,-0.1 1,-0.0 48,-0.0 -0.866 79.6-111.5 164.5-126.6 1.4 18.5 3.2 8 893 A G + 0 0 10 -2,-0.3 48,-0.9 51,-0.1 2,-0.6 0.329 45.3 152.6 159.9 43.1 0.7 15.0 1.8 9 894 A T E -A 55 0A 51 46,-0.2 74,-1.1 74,-0.1 2,-0.4 -0.829 18.8-174.7 -97.0 120.0 0.3 12.5 4.6 10 895 A V E -AB 54 82A 0 44,-2.2 44,-2.3 -2,-0.6 2,-0.3 -0.908 19.8-129.2-116.3 142.2 -2.0 9.5 3.8 11 896 A L E -AB 53 81A 29 70,-3.2 70,-2.4 -2,-0.4 2,-0.4 -0.695 24.1-175.3 -90.5 139.2 -3.1 6.7 6.1 12 897 A V E +AB 52 80A 0 40,-1.9 40,-1.4 -2,-0.3 2,-0.3 -0.982 3.6 176.9-139.0 125.3 -2.7 3.1 5.1 13 898 A S E - B 0 79A 31 66,-1.6 66,-2.7 -2,-0.4 2,-0.4 -0.902 18.2-141.1-126.6 155.0 -3.9 -0.0 7.0 14 899 A I E - B 0 78A 2 -2,-0.3 2,-0.6 8,-0.2 64,-0.2 -0.961 17.4-128.3-120.3 131.7 -3.8 -3.7 6.2 15 900 A K E + B 0 77A 136 62,-2.9 62,-0.5 -2,-0.4 2,-0.2 -0.655 43.4 156.5 -79.7 119.1 -6.6 -6.2 7.0 16 901 A S - 0 0 34 -2,-0.6 60,-0.0 60,-0.1 6,-0.0 -0.763 45.0-132.9-133.3 178.9 -5.2 -9.2 8.9 17 902 A S S S+ 0 0 121 -2,-0.2 -1,-0.1 1,-0.0 -2,-0.0 0.828 86.0 58.2-101.3 -48.4 -6.3 -12.0 11.3 18 903 A L S >> S- 0 0 92 1,-0.1 3,-1.0 2,-0.0 4,-0.6 -0.541 75.2-134.2 -86.2 151.5 -3.7 -11.9 14.0 19 904 A P T 34 S+ 0 0 97 0, 0.0 -1,-0.1 0, 0.0 4,-0.1 0.647 106.5 57.5 -76.9 -15.9 -2.9 -8.8 16.1 20 905 A E T 34 S+ 0 0 132 1,-0.2 -2,-0.0 2,-0.1 0, 0.0 0.246 100.0 59.6 -97.7 11.2 0.9 -9.4 15.6 21 906 A N T <4 S+ 0 0 49 -3,-1.0 -1,-0.2 1,-0.1 4,-0.1 0.615 73.9 89.0-109.4 -22.1 0.5 -9.3 11.8 22 907 A N < + 0 0 61 -4,-0.6 -8,-0.2 2,-0.1 2,-0.1 0.738 69.8 101.9 -48.6 -22.7 -0.9 -5.8 11.5 23 908 A F S S- 0 0 129 -4,-0.1 2,-0.4 1,-0.1 29,-0.1 -0.416 79.6-121.6 -67.6 137.7 2.8 -4.8 11.3 24 909 A F - 0 0 33 -2,-0.1 2,-0.1 4,-0.1 -1,-0.1 -0.661 27.8-156.7 -84.3 132.5 4.0 -4.0 7.8 25 910 A D > - 0 0 95 -2,-0.4 4,-2.2 -4,-0.1 5,-0.3 -0.322 36.8 -90.0 -97.6-177.3 6.9 -6.1 6.5 26 911 A D H > S+ 0 0 143 2,-0.2 4,-2.5 1,-0.2 5,-0.3 0.857 126.8 49.3 -61.9 -36.1 9.6 -5.5 3.9 27 912 A A H > S+ 0 0 51 2,-0.2 4,-3.0 3,-0.2 5,-0.4 0.975 109.4 48.2 -67.7 -57.4 7.3 -7.0 1.3 28 913 A L H > S+ 0 0 14 2,-0.2 4,-1.9 3,-0.2 -2,-0.2 0.904 122.3 36.9 -49.8 -47.0 4.1 -5.1 2.1 29 914 A I H X S+ 0 0 27 -4,-2.2 4,-2.6 2,-0.2 -2,-0.2 0.993 115.8 49.6 -70.0 -65.9 6.1 -1.9 2.1 30 915 A D H X S+ 0 0 101 -4,-2.5 4,-1.2 -5,-0.3 -3,-0.2 0.883 115.9 45.7 -38.8 -53.5 8.5 -2.5 -0.8 31 916 A E H X S+ 0 0 90 -4,-3.0 4,-1.8 -5,-0.3 3,-0.4 0.945 110.1 53.8 -58.2 -51.2 5.6 -3.6 -2.9 32 917 A L H X S+ 0 0 2 -4,-1.9 4,-2.7 -5,-0.4 5,-0.3 0.934 98.4 64.1 -48.9 -54.8 3.5 -0.6 -1.9 33 918 A L H X S+ 0 0 59 -4,-2.6 4,-1.9 1,-0.3 9,-0.3 0.874 105.6 44.5 -35.0 -58.8 6.2 1.9 -2.9 34 919 A Q H X S+ 0 0 134 -4,-1.2 4,-1.6 -3,-0.4 3,-0.3 0.937 110.3 54.3 -54.8 -51.2 5.9 0.8 -6.5 35 920 A Q H < S+ 0 0 34 -4,-1.8 -1,-0.2 1,-0.3 4,-0.2 0.878 110.6 46.9 -51.3 -41.4 2.1 0.9 -6.3 36 921 A F H >X S+ 0 0 1 -4,-2.7 4,-2.5 1,-0.2 3,-1.7 0.825 102.5 64.7 -70.9 -32.1 2.3 4.4 -5.1 37 922 A A H 3< S+ 0 0 35 -4,-1.9 -1,-0.2 -5,-0.3 -2,-0.2 0.876 82.9 75.4 -58.3 -39.2 4.8 5.3 -7.8 38 923 A S T 3< S+ 0 0 105 -4,-1.6 -1,-0.3 -3,-0.2 -2,-0.2 0.755 122.7 7.6 -45.0 -25.6 2.1 4.7 -10.5 39 924 A F T <4 S+ 0 0 85 -3,-1.7 2,-0.4 1,-0.4 -2,-0.2 0.667 137.3 17.0-121.0 -64.1 0.8 8.0 -9.3 40 925 A G < - 0 0 2 -4,-2.5 2,-1.1 21,-0.1 -1,-0.4 -0.925 69.8-121.9-121.3 145.1 3.1 9.8 -6.9 41 926 A E - 0 0 132 -2,-0.4 16,-0.6 -3,-0.1 -4,-0.1 -0.698 35.4-132.5 -85.8 97.2 6.8 9.2 -6.1 42 927 A V E +C 56 0A 15 -2,-1.1 14,-0.2 -9,-0.3 3,-0.1 -0.064 31.9 171.3 -46.3 145.6 6.8 8.4 -2.3 43 928 A I E + 0 0 108 12,-1.3 2,-0.3 1,-0.4 13,-0.1 0.619 61.7 22.6-126.6 -42.9 9.5 10.4 -0.4 44 929 A L E -C 55 0A 96 11,-0.7 11,-3.0 2,-0.0 -1,-0.4 -0.979 58.5-163.6-133.7 145.8 8.9 9.7 3.3 45 930 A I E -C 54 0A 45 -2,-0.3 2,-0.5 9,-0.2 9,-0.2 -0.985 2.4-167.8-133.7 124.6 7.1 7.0 5.2 46 931 A R E -C 53 0A 165 7,-1.5 7,-2.5 -2,-0.4 2,-0.6 -0.946 13.2-145.4-115.2 124.4 5.9 7.1 8.8 47 932 A F E -C 52 0A 120 -2,-0.5 5,-0.2 5,-0.2 2,-0.2 -0.769 16.1-151.1 -90.8 122.4 4.8 3.9 10.6 48 933 A V - 0 0 45 3,-2.2 -1,-0.0 -2,-0.6 -37,-0.0 -0.548 34.1 -96.7 -90.5 156.9 2.0 4.5 13.1 49 934 A E S S- 0 0 186 1,-0.2 -1,-0.1 -2,-0.2 3,-0.0 0.853 118.0 -11.9 -34.5 -52.1 1.4 2.4 16.3 50 935 A D S S+ 0 0 108 -27,-0.0 -1,-0.2 -37,-0.0 2,-0.1 0.557 133.8 64.8-124.9 -25.5 -1.1 0.3 14.3 51 936 A K S S- 0 0 66 -38,-0.1 -3,-2.2 -4,-0.0 2,-0.4 -0.440 71.7-132.7 -96.6 172.9 -1.6 2.4 11.1 52 937 A M E -AC 12 47A 0 -40,-1.4 -40,-1.9 -5,-0.2 2,-0.2 -0.935 16.6-161.7-133.5 110.7 0.9 3.3 8.4 53 938 A W E -AC 11 46A 62 -7,-2.5 -7,-1.5 -2,-0.4 2,-0.4 -0.626 3.8-163.9 -90.9 149.0 1.3 6.8 7.1 54 939 A V E -AC 10 45A 0 -44,-2.3 -44,-2.2 -2,-0.2 2,-0.2 -0.983 5.8-150.3-137.9 124.8 2.9 7.7 3.8 55 940 A T E -AC 9 44A 26 -11,-3.0 -12,-1.3 -2,-0.4 -11,-0.7 -0.637 12.3-160.0 -93.0 150.5 4.1 11.1 2.6 56 941 A F E - C 0 42A 3 -48,-0.9 -14,-0.1 -2,-0.2 6,-0.1 -0.893 35.3-101.6-128.5 158.6 4.2 12.2 -1.0 57 942 A L S S+ 0 0 121 -16,-0.6 2,-0.3 -2,-0.3 -1,-0.1 0.893 105.1 1.7 -40.7 -53.5 6.1 14.9 -3.0 58 943 A E S > S- 0 0 126 1,-0.1 4,-0.9 -50,-0.1 -52,-0.1 -0.867 74.1-111.0-134.5 167.8 3.0 17.1 -2.9 59 944 A G H >> S+ 0 0 17 -2,-0.3 3,-1.0 1,-0.2 4,-0.6 0.933 113.8 57.7 -64.7 -47.4 -0.5 17.0 -1.5 60 945 A S H >> S+ 0 0 81 1,-0.3 3,-1.9 2,-0.2 4,-0.9 0.888 101.5 57.4 -50.1 -43.9 -2.2 16.7 -4.9 61 946 A S H >> S+ 0 0 25 1,-0.3 4,-1.7 2,-0.2 3,-0.7 0.859 100.5 57.1 -56.6 -36.7 -0.2 13.5 -5.5 62 947 A A H << S+ 0 0 1 -3,-1.0 -1,-0.3 -4,-0.9 4,-0.2 0.639 102.0 57.9 -69.8 -13.6 -1.7 12.1 -2.4 63 948 A L H << S+ 0 0 88 -3,-1.9 -1,-0.2 -4,-0.6 -2,-0.2 0.730 105.7 47.6 -87.2 -25.2 -5.1 12.7 -3.9 64 949 A N H X< S+ 0 0 98 -4,-0.9 3,-1.9 -3,-0.7 -2,-0.2 0.851 102.0 61.6 -82.8 -38.1 -4.4 10.5 -7.0 65 950 A V G >< S+ 0 0 0 -4,-1.7 3,-2.8 1,-0.3 -1,-0.2 0.701 79.5 88.9 -61.3 -18.5 -3.0 7.6 -5.0 66 951 A L G > + 0 0 53 1,-0.3 3,-2.4 -4,-0.2 -1,-0.3 0.699 65.1 83.6 -53.3 -17.8 -6.4 7.3 -3.4 67 952 A S G < S+ 0 0 82 -3,-1.9 -1,-0.3 1,-0.3 -2,-0.1 0.645 82.0 62.0 -61.8 -13.0 -7.2 5.1 -6.4 68 953 A L G X S+ 0 0 18 -3,-2.8 2,-0.7 2,-0.1 3,-0.5 0.225 71.4 136.0 -96.9 12.8 -5.6 2.3 -4.3 69 954 A N T < S- 0 0 104 -3,-2.4 10,-0.2 1,-0.3 3,-0.1 -0.491 85.1 -2.3 -66.0 107.2 -8.2 2.7 -1.6 70 955 A G T 3 S+ 0 0 34 8,-0.9 8,-0.3 -2,-0.7 -1,-0.3 0.030 91.5 152.1 100.0 -26.9 -9.2 -0.9 -0.7 71 956 A K < - 0 0 96 -3,-0.5 7,-1.7 6,-0.1 2,-0.5 -0.066 42.6-131.5 -40.2 128.9 -6.9 -2.4 -3.3 72 957 A E E +D 77 0A 110 5,-0.2 2,-0.3 -3,-0.1 5,-0.3 -0.765 31.0 174.9 -93.0 130.4 -5.8 -5.8 -2.0 73 958 A L E > +D 76 0A 28 3,-2.4 3,-1.9 -2,-0.5 -45,-0.0 -0.985 59.8 1.4-136.3 146.0 -2.1 -6.7 -2.1 74 959 A L T 3 S- 0 0 62 -2,-0.3 -1,-0.2 1,-0.3 -46,-0.1 0.908 128.2 -58.7 44.9 52.2 -0.1 -9.7 -0.9 75 960 A N T 3 S+ 0 0 154 1,-0.1 2,-0.4 -3,-0.1 -1,-0.3 0.810 120.3 113.2 49.3 31.8 -3.2 -11.4 0.3 76 961 A R E < - D 0 73A 41 -3,-1.9 -3,-2.4 -60,-0.0 2,-0.4 -0.926 67.8-133.7-138.9 111.8 -3.7 -8.3 2.5 77 962 A T E -BD 15 72A 43 -62,-0.5 -62,-2.9 -2,-0.4 2,-0.4 -0.485 25.0-154.8 -66.2 116.6 -6.6 -5.9 2.0 78 963 A I E -B 14 0A 8 -7,-1.7 -8,-0.9 -2,-0.4 2,-0.5 -0.782 6.6-161.5 -97.8 137.2 -5.1 -2.3 2.1 79 964 A T E -B 13 0A 76 -66,-2.7 -66,-1.6 -2,-0.4 2,-0.3 -0.938 5.8-164.7-122.4 110.4 -7.2 0.6 3.1 80 965 A I E +B 12 0A 12 -2,-0.5 2,-0.3 -68,-0.2 -68,-0.2 -0.713 13.6 167.4 -94.6 143.2 -6.0 4.1 2.2 81 966 A A E -B 11 0A 47 -70,-2.4 -70,-3.2 -2,-0.3 -2,-0.0 -0.949 32.1-117.7-157.3 133.3 -7.5 7.3 3.8 82 967 A L E -B 10 0A 61 -2,-0.3 2,-1.3 -72,-0.2 -72,-0.2 -0.243 36.9-104.2 -67.1 157.7 -6.4 10.9 3.9 83 968 A K - 0 0 96 -74,-1.1 -74,-0.1 2,-0.0 -1,-0.1 -0.688 39.3-149.2 -87.9 91.1 -5.6 12.6 7.2 84 969 A S - 0 0 81 -2,-1.3 2,-0.6 1,-0.1 3,-0.1 -0.260 21.9-107.0 -60.3 143.5 -8.7 14.7 7.9 85 970 A P - 0 0 78 0, 0.0 -1,-0.1 0, 0.0 4,-0.1 -0.635 21.7-158.8 -78.1 115.1 -8.0 18.0 9.8 86 971 A S S S+ 0 0 132 -2,-0.6 -2,-0.0 2,-0.1 -3,-0.0 0.901 79.4 51.3 -58.7 -42.9 -9.3 17.7 13.4 87 972 A G S S- 0 0 37 1,-0.1 0, 0.0 -3,-0.1 0, 0.0 -0.748 102.7 -89.7-101.4 146.7 -9.5 21.5 13.7 88 973 A P - 0 0 123 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.029 28.2-130.3 -45.7 155.2 -11.2 23.9 11.3 89 974 A S S S+ 0 0 128 -4,-0.1 -2,-0.0 2,-0.1 -85,-0.0 0.906 85.4 75.2 -77.6 -44.6 -9.2 25.3 8.4 90 975 A S 0 0 105 1,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.116 360.0 360.0 -63.8 165.6 -10.1 28.9 9.0 91 976 A G 0 0 122 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.747 360.0 360.0-153.8 360.0 -8.6 30.9 11.9