==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL PROTEIN 26-APR-06 2DNT . COMPND 2 MOLECULE: CHROMODOMAIN PROTEIN, Y CHROMOSOME-LIKE, ISOFORM . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR A.Z.M.RUHUL MOMEN,H.HIROTA,K.IZUMI,M.YOSHIDA,S.YOKOYAMA, . 78 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7627.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 40 51.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 14 17.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 14.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 137 0, 0.0 2,-0.6 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-177.5 -12.4 15.1 5.5 2 2 A S - 0 0 124 0, 0.0 2,-0.7 0, 0.0 3,-0.0 -0.921 360.0-175.9-109.4 114.4 -12.9 11.8 7.2 3 3 A S + 0 0 77 -2,-0.6 0, 0.0 1,-0.1 0, 0.0 -0.905 50.3 79.9-113.7 103.6 -12.4 8.7 5.1 4 4 A G + 0 0 77 -2,-0.7 2,-0.5 2,-0.1 -1,-0.1 0.082 44.4 166.0 159.9 75.4 -13.2 5.5 6.9 5 5 A S - 0 0 115 2,-0.0 2,-0.0 -3,-0.0 -2,-0.0 -0.922 34.9-121.7-110.9 129.9 -16.8 4.4 7.2 6 6 A S + 0 0 114 -2,-0.5 2,-0.3 1,-0.0 -2,-0.1 -0.312 31.8 178.5 -66.2 149.3 -17.7 0.8 8.2 7 7 A G - 0 0 57 1,-0.1 -2,-0.0 -2,-0.0 -1,-0.0 -0.806 58.6 -23.4-159.7 112.1 -19.8 -1.2 5.8 8 8 A M S S+ 0 0 189 -2,-0.3 -1,-0.1 1,-0.0 0, 0.0 0.955 80.6 136.6 48.0 86.3 -21.0 -4.8 6.2 9 9 A A + 0 0 43 -3,-0.1 -1,-0.0 3,-0.1 -3,-0.0 0.658 22.1 174.6-119.9 -67.9 -18.4 -6.2 8.7 10 10 A S S S- 0 0 106 2,-0.1 0, 0.0 0, 0.0 0, 0.0 0.950 79.7 -19.9 49.7 90.2 -20.1 -8.3 11.3 11 11 A E S S- 0 0 190 1,-0.1 2,-0.3 2,-0.0 3,-0.1 0.922 86.8-163.0 44.5 93.6 -17.2 -9.8 13.3 12 12 A E - 0 0 118 1,-0.1 3,-0.2 3,-0.0 -1,-0.1 -0.701 26.3-117.8-105.2 158.1 -14.3 -9.4 10.9 13 13 A L S S- 0 0 128 -2,-0.3 2,-0.3 1,-0.2 -1,-0.1 0.985 83.6 -35.3 -53.6 -73.4 -10.9 -11.2 11.0 14 14 A Y - 0 0 140 -3,-0.1 2,-0.5 22,-0.1 -1,-0.2 -0.936 52.4-138.0-159.9 133.5 -8.7 -8.1 11.4 15 15 A E - 0 0 137 -2,-0.3 22,-0.2 -3,-0.2 2,-0.1 -0.807 35.4-106.4 -97.0 131.3 -8.9 -4.5 10.1 16 16 A V - 0 0 8 -2,-0.5 20,-0.1 1,-0.2 3,-0.1 -0.351 32.5-171.6 -56.5 120.7 -5.7 -2.9 8.9 17 17 A E - 0 0 103 18,-1.0 2,-0.3 1,-0.3 -1,-0.2 0.930 54.4 -58.7 -80.4 -51.4 -4.7 -0.4 11.6 18 18 A R - 0 0 150 17,-0.3 17,-1.2 44,-0.0 2,-0.4 -0.946 50.6 -86.6 177.4 168.4 -1.9 1.3 9.7 19 19 A I E +A 34 0A 10 -2,-0.3 15,-0.2 15,-0.2 3,-0.1 -0.811 31.3 170.4 -97.6 132.6 1.4 0.9 8.0 20 20 A V E S- 0 0 72 13,-3.7 2,-0.3 -2,-0.4 14,-0.2 0.512 71.8 -5.8-112.7 -15.0 4.6 1.0 10.1 21 21 A D E -A 33 0A 66 12,-1.0 12,-3.2 2,-0.0 -1,-0.4 -0.967 57.1-156.3-168.3 170.0 6.9 -0.2 7.3 22 22 A K E +A 32 0A 74 10,-0.3 2,-0.3 -2,-0.3 10,-0.3 -0.941 20.7 148.1-161.6 137.5 7.1 -1.6 3.8 23 23 A R E -A 31 0A 183 8,-3.5 8,-4.7 -2,-0.3 2,-0.3 -0.946 40.1 -97.8-159.5 174.6 9.5 -3.6 1.8 24 24 A K E -A 30 0A 138 -2,-0.3 6,-0.3 6,-0.3 2,-0.2 -0.772 34.5-120.0-105.2 150.0 9.9 -6.2 -1.0 25 25 A N > - 0 0 83 4,-3.4 3,-1.7 -2,-0.3 4,-0.0 -0.503 29.6-107.7 -85.7 156.5 10.2 -9.9 -0.5 26 26 A K T 3 S+ 0 0 192 1,-0.3 -1,-0.1 -2,-0.2 -2,-0.0 0.726 125.9 56.9 -53.5 -21.1 13.2 -11.9 -1.8 27 27 A K T 3 S- 0 0 182 2,-0.1 -1,-0.3 0, 0.0 -3,-0.0 0.794 126.9-103.3 -79.7 -31.2 10.7 -13.1 -4.3 28 28 A G S < S+ 0 0 28 -3,-1.7 2,-0.4 1,-0.3 -2,-0.2 0.581 74.5 138.6 114.4 21.9 9.9 -9.6 -5.4 29 29 A K - 0 0 127 -4,-0.0 -4,-3.4 20,-0.0 2,-0.5 -0.799 54.3-120.0-100.4 140.0 6.6 -9.1 -3.6 30 30 A T E -A 24 0A 50 -2,-0.4 19,-1.8 -6,-0.3 2,-0.4 -0.667 31.6-172.0 -81.6 124.9 5.7 -5.9 -1.9 31 31 A E E -AB 23 48A 7 -8,-4.7 -8,-3.5 -2,-0.5 2,-0.5 -0.972 8.2-158.0-122.4 132.8 5.0 -6.3 1.8 32 32 A Y E -AB 22 47A 16 15,-3.8 15,-2.2 -2,-0.4 2,-0.8 -0.934 20.2-126.8-113.4 129.6 3.7 -3.6 4.1 33 33 A L E +AB 21 46A 14 -12,-3.2 -13,-3.7 -2,-0.5 -12,-1.0 -0.632 40.6 170.0 -75.8 109.6 4.2 -3.8 7.9 34 34 A V E -AB 19 45A 0 11,-1.2 11,-1.3 -2,-0.8 -15,-0.2 -0.948 25.0-133.3-124.8 144.5 0.7 -3.4 9.3 35 35 A R - 0 0 95 -17,-1.2 -18,-1.0 -2,-0.4 2,-0.3 -0.332 21.2-173.5 -88.2 172.9 -0.4 -3.9 12.9 36 36 A W B > -C 39 0B 34 3,-0.6 3,-0.8 4,-0.2 7,-0.1 -0.972 36.3 -75.8-162.0 159.3 -3.4 -5.8 14.2 37 37 A K T 3 S+ 0 0 194 -2,-0.3 2,-0.2 1,-0.2 3,-0.1 -0.328 116.9 17.8 -61.9 141.0 -5.3 -6.5 17.4 38 38 A G T 3 S+ 0 0 76 1,-0.2 2,-0.7 -2,-0.0 -1,-0.2 -0.156 101.9 103.8 89.6 -38.9 -3.6 -8.9 19.8 39 39 A Y B < -C 36 0B 98 -3,-0.8 -3,-0.6 -2,-0.2 -1,-0.2 -0.696 67.9-141.9 -82.1 112.8 -0.3 -8.3 17.9 40 40 A D >> - 0 0 115 -2,-0.7 3,-1.4 3,-0.1 4,-0.9 0.067 33.9 -90.1 -61.0 179.9 1.9 -6.1 20.0 41 41 A S G >4 S+ 0 0 68 1,-0.3 3,-0.6 2,-0.2 -1,-0.1 0.891 134.3 42.2 -61.2 -41.6 4.1 -3.4 18.4 42 42 A E G 34 S+ 0 0 180 1,-0.2 -1,-0.3 0, 0.0 -2,-0.1 0.266 110.1 61.4 -88.2 10.5 7.0 -6.0 18.1 43 43 A D G <4 S+ 0 0 76 -3,-1.4 -1,-0.2 -7,-0.1 -2,-0.2 0.525 73.2 129.4-108.8 -14.6 4.4 -8.5 17.0 44 44 A D << - 0 0 43 -4,-0.9 2,-0.2 -3,-0.6 -9,-0.2 0.016 47.4-145.1 -40.3 148.1 3.3 -6.6 13.9 45 45 A T E -B 34 0A 33 -11,-1.3 -11,-1.2 -6,-0.1 2,-0.5 -0.565 10.6-111.4-113.9 178.7 3.4 -8.8 10.8 46 46 A W E -B 33 0A 98 -13,-0.2 -13,-0.2 -2,-0.2 -24,-0.1 -0.968 31.6-174.9-118.2 120.2 4.2 -8.3 7.1 47 47 A E E -B 32 0A 53 -15,-2.2 -15,-3.8 -2,-0.5 2,-0.2 -0.941 25.5-118.9-118.5 137.7 1.4 -8.4 4.6 48 48 A P E >> -B 31 0A 25 0, 0.0 3,-2.0 0, 0.0 4,-1.7 -0.525 26.5-117.5 -75.0 136.3 1.7 -8.2 0.8 49 49 A E T 34 S+ 0 0 76 -19,-1.8 6,-0.2 1,-0.3 -18,-0.1 0.770 117.2 64.8 -40.1 -30.6 -0.1 -5.3 -0.9 50 50 A Q T 34 S+ 0 0 145 -20,-0.4 -1,-0.3 1,-0.2 -19,-0.1 0.932 103.1 42.7 -60.4 -48.8 -2.1 -8.1 -2.5 51 51 A H T <4 S+ 0 0 124 -3,-2.0 2,-1.9 1,-0.2 -1,-0.2 0.758 100.5 78.6 -68.6 -25.2 -3.5 -9.3 0.8 52 52 A L >< + 0 0 3 -4,-1.7 3,-0.8 3,-0.0 2,-0.4 -0.540 68.6 168.5 -85.5 71.9 -4.1 -5.6 1.6 53 53 A V T 3 + 0 0 101 -2,-1.9 -3,-0.1 1,-0.2 -2,-0.0 -0.742 67.4 6.9 -90.4 132.3 -7.2 -5.2 -0.5 54 54 A N T 3 S+ 0 0 144 -2,-0.4 -1,-0.2 1,-0.1 3,-0.1 0.723 105.8 100.3 70.5 21.9 -9.2 -2.1 -0.1 55 55 A C <> + 0 0 16 -3,-0.8 4,-1.7 -6,-0.2 3,-0.3 0.321 38.2 112.0-115.1 0.1 -6.4 -0.9 2.1 56 56 A E H > S+ 0 0 92 1,-0.2 4,-4.6 2,-0.2 5,-0.2 0.859 71.2 63.8 -39.6 -47.4 -4.8 1.3 -0.6 57 57 A E H > S+ 0 0 94 2,-0.2 4,-3.2 1,-0.2 5,-0.2 0.932 105.3 41.6 -42.2 -68.4 -5.9 4.3 1.5 58 58 A Y H > S+ 0 0 60 -3,-0.3 4,-3.7 1,-0.2 5,-0.3 0.934 118.1 46.1 -45.3 -61.8 -3.7 3.4 4.5 59 59 A I H X S+ 0 0 6 -4,-1.7 4,-3.9 1,-0.2 5,-0.2 0.927 112.2 52.4 -47.4 -53.9 -0.8 2.4 2.2 60 60 A H H X S+ 0 0 98 -4,-4.6 4,-2.9 -5,-0.2 -1,-0.2 0.936 112.7 43.8 -47.4 -57.2 -1.2 5.5 0.2 61 61 A D H X S+ 0 0 104 -4,-3.2 4,-2.1 1,-0.2 -1,-0.2 0.929 115.4 49.1 -54.5 -49.5 -1.1 7.7 3.3 62 62 A F H X S+ 0 0 35 -4,-3.7 4,-1.9 -5,-0.2 -1,-0.2 0.873 110.6 51.2 -57.9 -40.1 1.8 5.7 4.6 63 63 A N H X S+ 0 0 44 -4,-3.9 4,-3.3 -5,-0.3 -1,-0.2 0.923 105.3 55.8 -63.3 -46.0 3.5 6.1 1.2 64 64 A R H < S+ 0 0 133 -4,-2.9 -2,-0.2 -5,-0.2 -1,-0.2 0.911 105.1 53.3 -51.8 -48.3 3.0 9.8 1.3 65 65 A R H < S+ 0 0 216 -4,-2.1 -1,-0.2 1,-0.2 -2,-0.2 0.953 114.6 39.7 -51.7 -58.4 4.7 10.0 4.7 66 66 A H H < S+ 0 0 128 -4,-1.9 -2,-0.2 -5,-0.1 -1,-0.2 0.976 100.0 86.9 -55.5 -62.1 7.8 8.2 3.4 67 67 A T S < S- 0 0 41 -4,-3.3 2,-0.6 -5,-0.1 3,-0.2 0.029 77.7-133.6 -39.3 146.0 7.8 10.0 0.0 68 68 A E - 0 0 170 1,-0.3 -1,-0.1 2,-0.0 -2,-0.1 -0.948 69.4 -16.3-115.0 117.3 9.6 13.3 0.0 69 69 A K S S+ 0 0 199 -2,-0.6 -1,-0.3 -5,-0.1 3,-0.1 0.901 91.0 113.1 55.7 103.4 8.0 16.3 -1.5 70 70 A Q + 0 0 165 1,-0.6 2,-0.3 -3,-0.2 -2,-0.0 0.207 56.2 64.4-160.3 -57.3 5.1 15.1 -3.7 71 71 A K S S- 0 0 127 -7,-0.1 -1,-0.6 -4,-0.1 2,-0.3 -0.646 76.7-127.7 -86.6 141.3 1.7 16.2 -2.5 72 72 A E - 0 0 182 -2,-0.3 2,-0.2 -3,-0.1 -1,-0.0 -0.648 19.3-124.6 -89.9 145.1 0.9 19.9 -2.3 73 73 A S - 0 0 109 -2,-0.3 -1,-0.0 0, 0.0 0, 0.0 -0.611 26.9-168.0 -88.9 148.4 -0.4 21.5 0.9 74 74 A G - 0 0 57 -2,-0.2 3,-0.0 1,-0.1 0, 0.0 -0.935 19.7-109.3-135.7 157.9 -3.7 23.4 1.0 75 75 A P - 0 0 133 0, 0.0 2,-0.7 0, 0.0 -1,-0.1 -0.064 41.7 -92.6 -75.0-179.3 -5.5 25.7 3.4 76 76 A S + 0 0 126 1,-0.2 0, 0.0 2,-0.0 0, 0.0 -0.883 39.6 174.0-103.5 110.5 -8.6 24.9 5.4 77 77 A S 0 0 136 -2,-0.7 -1,-0.2 1,-0.1 0, 0.0 0.972 360.0 360.0 -75.9 -60.5 -11.8 25.9 3.6 78 78 A G 0 0 120 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.342 360.0 360.0 165.1 360.0 -14.3 24.5 6.0