==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 27-APR-06 2DNZ . COMPND 2 MOLECULE: PROBABLE RNA-BINDING PROTEIN 23; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 95 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6865.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 49.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 18.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 5.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 16.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 224 A G 0 0 118 0, 0.0 4,-0.2 0, 0.0 3,-0.2 0.000 360.0 360.0 360.0-126.7 17.2 11.3 -2.5 2 225 A S + 0 0 109 1,-0.2 2,-1.0 2,-0.1 3,-0.2 0.861 360.0 46.9 -96.2 -49.4 16.7 8.1 -4.5 3 226 A S S S+ 0 0 97 1,-0.2 -1,-0.2 0, 0.0 0, 0.0 -0.742 106.5 50.3 -99.1 88.2 16.8 5.4 -1.7 4 227 A G + 0 0 45 -2,-1.0 -1,-0.2 -3,-0.2 -2,-0.1 0.139 59.0 130.6 179.5 -42.3 14.5 6.8 1.0 5 228 A S - 0 0 89 -3,-0.2 2,-1.5 -4,-0.2 78,-0.2 -0.041 56.4-133.4 -37.1 120.3 11.1 7.9 -0.4 6 229 A S + 0 0 19 48,-0.2 48,-1.7 49,-0.1 2,-0.4 -0.642 48.7 147.0 -85.4 87.4 8.6 6.2 1.9 7 230 A G E -A 53 0A 10 -2,-1.5 75,-2.1 46,-0.2 76,-0.5 -0.971 29.2-162.1-128.0 140.7 6.1 4.8 -0.7 8 231 A L E -AB 52 81A 1 44,-3.3 44,-2.2 -2,-0.4 2,-0.4 -0.916 9.3-143.8-121.1 147.0 4.0 1.7 -0.6 9 232 A Y E -AB 51 80A 81 71,-3.4 71,-2.1 -2,-0.3 2,-0.4 -0.888 10.3-162.8-111.9 139.6 2.3 -0.2 -3.5 10 233 A V E +AB 50 79A 0 40,-2.1 40,-2.2 -2,-0.4 2,-0.3 -0.977 17.0 160.4-124.4 131.3 -1.1 -1.9 -3.3 11 234 A G E + B 0 78A 0 67,-2.9 67,-3.3 -2,-0.4 38,-0.2 -0.942 45.6 50.1-144.2 165.4 -2.5 -4.5 -5.7 12 235 A S S S+ 0 0 76 36,-0.5 2,-0.2 -2,-0.3 37,-0.2 0.913 75.6 144.5 72.8 44.7 -5.1 -7.2 -6.1 13 236 A L - 0 0 21 35,-2.1 2,-0.5 -3,-0.1 -1,-0.2 -0.597 55.5 -93.3-109.2 172.1 -8.0 -5.1 -4.8 14 237 A H > - 0 0 101 -2,-0.2 3,-2.1 1,-0.1 34,-0.1 -0.752 25.4-132.5 -90.3 127.0 -11.6 -4.9 -5.7 15 238 A F T 3 S+ 0 0 124 -2,-0.5 -1,-0.1 1,-0.3 31,-0.1 0.850 107.8 64.2 -41.5 -42.5 -12.6 -2.3 -8.4 16 239 A N T 3 S+ 0 0 124 2,-0.0 -1,-0.3 -3,-0.0 32,-0.0 0.881 83.0 99.6 -51.1 -42.1 -15.4 -1.3 -6.0 17 240 A I < - 0 0 26 -3,-2.1 2,-0.2 1,-0.1 31,-0.0 0.003 58.6-167.0 -44.7 152.2 -12.7 -0.2 -3.5 18 241 A T >> - 0 0 52 1,-0.0 4,-1.6 19,-0.0 3,-0.6 -0.798 38.6 -91.5-137.0 178.6 -12.0 3.6 -3.4 19 242 A E H 3> S+ 0 0 90 1,-0.2 4,-3.0 -2,-0.2 5,-0.3 0.856 122.1 60.9 -61.7 -35.8 -9.4 6.0 -2.1 20 243 A D H 3> S+ 0 0 100 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.847 104.6 49.2 -60.2 -34.9 -11.6 6.4 1.1 21 244 A M H <> S+ 0 0 68 -3,-0.6 4,-1.7 2,-0.2 -1,-0.2 0.892 113.0 45.6 -72.0 -41.2 -11.1 2.7 1.8 22 245 A L H X S+ 0 0 4 -4,-1.6 4,-2.9 2,-0.2 -2,-0.2 0.903 115.3 46.7 -68.7 -42.2 -7.3 2.9 1.3 23 246 A R H X S+ 0 0 139 -4,-3.0 4,-0.7 1,-0.2 -2,-0.2 0.886 112.3 50.5 -67.3 -39.9 -7.0 6.0 3.4 24 247 A G H < S+ 0 0 40 -4,-1.9 -1,-0.2 -5,-0.3 -2,-0.2 0.850 117.3 39.7 -67.3 -34.8 -9.2 4.6 6.2 25 248 A I H < S+ 0 0 34 -4,-1.7 -2,-0.2 1,-0.2 -1,-0.2 0.884 121.3 41.4 -81.0 -42.3 -7.2 1.4 6.3 26 249 A F H X S+ 0 0 1 -4,-2.9 4,-1.2 -5,-0.2 -2,-0.2 0.462 102.3 77.5 -83.5 -1.6 -3.7 3.0 5.9 27 250 A E T >< S+ 0 0 114 -4,-0.7 3,-0.8 1,-0.2 -1,-0.2 0.980 95.4 40.8 -70.3 -59.8 -4.8 5.8 8.2 28 251 A P T 34 S+ 0 0 96 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 0.429 115.4 57.6 -69.8 2.9 -4.5 3.9 11.6 29 252 A F T 34 S- 0 0 54 1,-0.4 34,-0.3 -3,-0.1 2,-0.2 0.713 123.5 -28.7-103.0 -30.4 -1.3 2.4 10.1 30 253 A G S << S- 0 0 8 -4,-1.2 -1,-0.4 -3,-0.8 2,-0.3 -0.867 74.6 -74.4 176.6 149.0 0.6 5.6 9.4 31 254 A K - 0 0 151 -2,-0.2 24,-0.9 -3,-0.1 2,-0.5 -0.354 50.8-140.6 -56.3 111.4 0.2 9.3 8.5 32 255 A I E -C 54 0A 40 -2,-0.3 22,-0.2 22,-0.2 3,-0.1 -0.649 19.0-172.9 -80.6 125.0 -0.8 9.3 4.8 33 256 A D E - 0 0 108 20,-3.1 2,-0.3 -2,-0.5 21,-0.2 0.886 67.7 -23.1 -82.3 -43.1 0.9 12.0 2.8 34 257 A N E -C 53 0A 104 19,-1.1 19,-2.1 2,-0.0 2,-0.4 -0.955 53.8-146.8-168.2 149.3 -1.1 11.4 -0.4 35 258 A I E -C 52 0A 24 -2,-0.3 2,-0.4 17,-0.2 17,-0.2 -0.986 14.0-179.7-128.2 132.7 -3.0 8.7 -2.3 36 259 A V E -C 51 0A 67 15,-2.6 15,-3.2 -2,-0.4 2,-0.4 -0.990 16.6-145.0-135.0 127.0 -3.3 8.2 -6.0 37 260 A L E -C 50 0A 44 -2,-0.4 2,-0.4 13,-0.2 13,-0.2 -0.730 13.4-145.2 -92.1 136.3 -5.2 5.5 -7.8 38 261 A M E +C 49 0A 66 11,-1.1 11,-0.5 -2,-0.4 10,-0.4 -0.851 26.6 161.7-103.9 134.3 -3.8 3.9 -11.0 39 262 A K - 0 0 97 -2,-0.4 2,-0.1 7,-0.2 7,-0.1 -0.740 32.1-101.9-136.3-175.8 -6.1 2.9 -13.9 40 263 A D - 0 0 59 -2,-0.2 6,-0.1 1,-0.1 -1,-0.1 -0.369 10.2-146.3-102.8-176.0 -6.0 2.1 -17.6 41 264 A S S S+ 0 0 99 -2,-0.1 -1,-0.1 3,-0.1 0, 0.0 0.697 95.0 48.2-118.4 -47.4 -7.1 4.0 -20.7 42 265 A D S S+ 0 0 149 1,-0.1 -2,-0.0 3,-0.0 0, 0.0 0.752 135.2 17.9 -68.5 -24.1 -8.4 1.4 -23.2 43 266 A T S S- 0 0 81 2,-0.1 -1,-0.1 0, 0.0 3,-0.1 0.696 81.4-157.2-114.8 -38.1 -10.5 -0.0 -20.4 44 267 A G + 0 0 42 1,-0.2 2,-0.6 0, 0.0 -3,-0.1 0.766 48.6 132.9 62.3 24.9 -10.6 2.7 -17.8 45 268 A R - 0 0 179 3,-0.0 -1,-0.2 2,-0.0 -4,-0.1 -0.921 69.9-109.9-114.0 110.7 -11.4 0.1 -15.2 46 269 A S - 0 0 27 -2,-0.6 -7,-0.2 1,-0.2 -31,-0.1 -0.072 24.5-151.2 -38.2 103.8 -9.4 0.2 -12.0 47 270 A K - 0 0 110 -9,-0.3 -1,-0.2 1,-0.1 -32,-0.2 0.799 51.2 -93.8 -52.2 -29.6 -7.2 -2.9 -12.4 48 271 A G S S+ 0 0 5 -10,-0.4 -35,-2.1 1,-0.4 -36,-0.5 0.697 90.0 96.6 117.0 37.4 -7.2 -3.1 -8.6 49 272 A Y E + C 0 38A 55 -11,-0.5 -11,-1.1 -38,-0.2 -1,-0.4 -0.963 37.9 170.5-148.6 163.3 -4.0 -1.3 -7.6 50 273 A G E -AC 10 37A 0 -40,-2.2 -40,-2.1 -2,-0.3 2,-0.4 -0.968 28.6-107.4-163.3 175.6 -2.8 2.1 -6.4 51 274 A F E -AC 9 36A 67 -15,-3.2 -15,-2.6 -2,-0.3 2,-0.4 -0.948 27.9-179.6-120.4 137.7 0.0 4.2 -4.9 52 275 A I E -AC 8 35A 1 -44,-2.2 -44,-3.3 -2,-0.4 2,-0.5 -0.999 10.9-157.8-138.5 137.4 0.3 5.5 -1.4 53 276 A T E -AC 7 34A 62 -19,-2.1 -20,-3.1 -2,-0.4 -19,-1.1 -0.956 10.3-162.4-118.5 129.5 3.0 7.6 0.3 54 277 A F E - C 0 32A 2 -48,-1.7 -48,-0.2 -2,-0.5 -22,-0.2 -0.332 24.2-124.6 -97.8-177.9 3.5 7.8 4.1 55 278 A S S S+ 0 0 52 -24,-0.9 2,-0.4 1,-0.2 -49,-0.1 0.827 92.8 37.5 -95.5 -41.6 5.4 10.2 6.3 56 279 A D > - 0 0 78 -25,-0.2 4,-1.6 1,-0.1 -1,-0.2 -0.914 68.8-140.2-116.6 141.2 7.7 7.8 8.1 57 280 A S H > S+ 0 0 55 -2,-0.4 4,-1.9 1,-0.2 5,-0.1 0.859 104.9 57.0 -63.9 -36.2 9.5 4.8 6.7 58 281 A E H > S+ 0 0 113 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.909 105.0 50.6 -61.7 -43.6 8.8 2.9 9.9 59 282 A C H > S+ 0 0 17 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.889 108.1 53.3 -62.1 -40.5 5.1 3.4 9.6 60 283 A A H X S+ 0 0 2 -4,-1.6 4,-2.0 1,-0.2 -1,-0.2 0.904 107.4 51.2 -61.8 -42.8 5.1 2.2 6.0 61 284 A R H X S+ 0 0 75 -4,-1.9 4,-1.8 2,-0.2 -1,-0.2 0.932 110.6 48.2 -60.7 -48.1 6.8 -1.0 7.0 62 285 A R H X S+ 0 0 153 -4,-2.0 4,-2.3 1,-0.2 3,-0.3 0.943 111.7 48.8 -58.3 -50.9 4.3 -1.8 9.8 63 286 A A H X S+ 0 0 0 -4,-2.4 4,-3.0 -34,-0.3 5,-0.3 0.846 108.2 56.4 -58.5 -34.9 1.3 -1.1 7.5 64 287 A L H X S+ 0 0 28 -4,-2.0 4,-3.0 2,-0.2 -1,-0.2 0.893 108.5 45.9 -64.7 -40.8 2.9 -3.4 4.9 65 288 A E H < S+ 0 0 135 -4,-1.8 -2,-0.2 -3,-0.3 -1,-0.2 0.901 117.7 42.7 -69.0 -42.2 3.1 -6.3 7.4 66 289 A Q H < S+ 0 0 128 -4,-2.3 -2,-0.2 -5,-0.2 -1,-0.2 0.873 120.8 42.0 -71.7 -38.4 -0.4 -5.8 8.6 67 290 A L H >< S+ 0 0 0 -4,-3.0 3,-1.9 -5,-0.2 10,-0.3 0.926 88.4 100.1 -74.1 -47.0 -1.8 -5.2 5.1 68 291 A N T 3< S+ 0 0 97 -4,-3.0 10,-0.1 1,-0.3 3,-0.1 -0.173 104.8 1.9 -44.5 110.2 0.2 -8.0 3.4 69 292 A G T 3 S+ 0 0 34 8,-1.2 2,-0.9 1,-0.2 -1,-0.3 0.866 90.4 152.2 75.7 37.2 -2.3 -10.8 3.2 70 293 A F < - 0 0 85 -3,-1.9 7,-0.3 7,-0.2 -1,-0.2 -0.794 42.8-137.1-104.8 91.8 -5.2 -8.8 4.6 71 294 A E + 0 0 108 -2,-0.9 -3,-0.0 5,-0.2 0, 0.0 -0.227 33.2 166.2 -48.9 118.4 -8.4 -10.1 3.2 72 295 A L S S+ 0 0 59 3,-1.5 -1,-0.2 1,-0.0 -59,-0.1 0.796 78.4 16.8-103.8 -44.7 -10.5 -7.1 2.3 73 296 A A S S- 0 0 65 2,-0.7 -2,-0.1 0, 0.0 -1,-0.0 -0.196 131.4 -68.7-123.0 40.1 -13.2 -8.6 0.1 74 297 A G S S+ 0 0 69 1,-0.2 -3,-0.1 0, 0.0 0, 0.0 0.018 118.6 78.0 99.1 -27.7 -12.9 -12.3 1.0 75 298 A R S S- 0 0 204 -5,-0.1 -3,-1.5 -63,-0.1 -2,-0.7 -0.884 87.6-102.9-118.3 148.5 -9.5 -12.6 -0.7 76 299 A P - 0 0 73 0, 0.0 -5,-0.2 0, 0.0 2,-0.1 -0.466 36.4-139.4 -69.7 132.6 -6.0 -11.5 0.4 77 300 A M - 0 0 6 -10,-0.3 -8,-1.2 -7,-0.3 2,-0.5 -0.347 15.9-110.4 -86.9 170.9 -4.7 -8.4 -1.2 78 301 A R E +B 11 0A 168 -67,-3.3 -67,-2.9 -10,-0.1 2,-0.4 -0.905 33.8 177.9-108.6 127.8 -1.1 -7.7 -2.3 79 302 A V E +B 10 0A 13 -2,-0.5 2,-0.3 -69,-0.2 -69,-0.2 -0.991 11.5 148.0-132.5 127.6 1.1 -5.2 -0.5 80 303 A G E -B 9 0A 25 -71,-2.1 -71,-3.4 -2,-0.4 2,-0.1 -0.977 47.2 -84.6-152.5 163.9 4.7 -4.4 -1.3 81 304 A H E -B 8 0A 52 -2,-0.3 -73,-0.2 -73,-0.2 -75,-0.1 -0.399 26.9-141.0 -71.1 146.4 7.3 -1.6 -1.2 82 305 A V S S+ 0 0 55 -75,-2.1 -74,-0.1 1,-0.2 -1,-0.1 0.889 105.0 43.1 -73.9 -41.0 7.4 0.8 -4.2 83 306 A T S S- 0 0 70 -76,-0.5 -1,-0.2 -78,-0.2 3,-0.1 0.611 94.0-148.7 -79.5 -12.6 11.2 1.0 -4.2 84 307 A E + 0 0 167 1,-0.2 2,-0.4 0, 0.0 -2,-0.1 0.861 53.2 130.3 44.7 42.0 11.4 -2.7 -3.7 85 308 A R - 0 0 160 2,-0.0 -1,-0.2 0, 0.0 -2,-0.1 -0.988 55.7-127.2-129.7 135.0 14.7 -2.1 -1.8 86 309 A L + 0 0 140 -2,-0.4 2,-0.3 -3,-0.1 0, 0.0 -0.221 33.2 166.7 -72.3 166.1 15.7 -3.5 1.6 87 310 A D + 0 0 101 2,-0.0 2,-0.3 0, 0.0 -2,-0.0 -0.971 7.4 125.5-172.3 162.9 17.0 -1.2 4.4 88 311 A G - 0 0 65 -2,-0.3 2,-0.7 2,-0.0 -2,-0.0 -0.887 56.4 -70.2 157.3 172.9 17.7 -1.1 8.1 89 312 A G - 0 0 85 -2,-0.3 -2,-0.0 2,-0.1 2,-0.0 -0.842 44.5-146.8-100.0 111.5 20.3 -0.3 10.8 90 313 A S + 0 0 129 -2,-0.7 -2,-0.0 2,-0.0 0, 0.0 -0.280 40.4 130.5 -70.6 158.3 23.2 -2.8 11.0 91 314 A G + 0 0 57 4,-0.0 -2,-0.1 -2,-0.0 -1,-0.0 0.193 22.7 179.1 152.3 76.4 24.8 -3.6 14.3 92 315 A P + 0 0 108 0, 0.0 3,-0.4 0, 0.0 -2,-0.0 0.555 43.3 135.8 -69.7 -7.1 25.4 -7.2 15.4 93 316 A S + 0 0 107 1,-0.2 -2,-0.0 2,-0.0 0, 0.0 0.005 69.1 18.2 -41.8 146.7 27.0 -5.9 18.5 94 317 A S 0 0 133 1,-0.1 -1,-0.2 0, 0.0 0, 0.0 0.890 360.0 360.0 53.0 42.5 25.9 -7.7 21.7 95 318 A G 0 0 114 -3,-0.4 -1,-0.1 0, 0.0 -4,-0.0 -0.558 360.0 360.0-145.8 360.0 24.7 -10.6 19.6