==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSFERASE 21-DEC-99 1DOQ . COMPND 2 MOLECULE: RNA POLYMERASE ALPHA SUBUNIT; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; . AUTHOR T.WADA,T.YAMAZAKI,Y.KYOGOKU . 69 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5106.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 44 63.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 14.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 29 42.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 4.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 247 A E 0 0 199 0, 0.0 3,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 139.5 54.0 -19.8 1.1 2 248 A Q + 0 0 168 1,-0.1 5,-0.2 2,-0.1 0, 0.0 -0.221 360.0 38.6-119.8 44.4 56.1 -16.8 0.3 3 249 A E + 0 0 58 3,-0.1 -1,-0.1 60,-0.0 5,-0.0 0.181 60.7 134.9-177.6 31.3 54.1 -14.0 2.0 4 250 A E S S+ 0 0 169 1,-0.2 -2,-0.1 -3,-0.2 0, 0.0 0.896 100.7 4.9 -60.5 -36.9 52.7 -15.4 5.3 5 251 A E S S- 0 0 160 60,-0.0 -1,-0.2 2,-0.0 58,-0.1 0.188 110.9-106.8-131.7 15.4 53.8 -12.1 7.0 6 252 A L + 0 0 6 1,-0.1 -3,-0.1 57,-0.0 57,-0.0 0.802 52.4 161.2 59.6 112.0 55.0 -10.1 4.0 7 253 A D + 0 0 110 -5,-0.2 -1,-0.1 24,-0.1 -3,-0.1 -0.252 20.9 126.3-160.1 62.2 58.8 -9.8 4.0 8 254 A L - 0 0 55 -5,-0.0 23,-2.2 5,-0.0 24,-0.5 -0.781 62.6 -94.4-120.8 167.5 60.3 -8.8 0.6 9 255 A P >> - 0 0 40 0, 0.0 4,-2.0 0, 0.0 3,-1.3 -0.633 22.6-144.7 -80.5 130.3 62.6 -6.1 -0.6 10 256 A L H 3>>S+ 0 0 2 19,-0.4 4,-1.2 -2,-0.4 5,-0.6 0.954 98.5 69.9 -61.2 -44.9 60.8 -2.9 -1.9 11 257 A E H 345S+ 0 0 112 1,-0.3 -1,-0.3 18,-0.2 9,-0.1 0.803 112.4 32.8 -42.6 -26.9 63.5 -2.5 -4.6 12 258 A E H <45S+ 0 0 124 -3,-1.3 -1,-0.3 1,-0.1 -2,-0.2 0.733 93.8 87.0-102.6 -28.5 61.9 -5.7 -6.1 13 259 A L H <5S- 0 0 37 -4,-2.0 -2,-0.2 1,-0.2 -3,-0.1 0.812 98.5-126.5 -41.9 -27.8 58.3 -5.0 -5.0 14 260 A G T <5 + 0 0 55 -4,-1.2 -1,-0.2 1,-0.1 3,-0.1 0.648 53.2 159.0 88.1 14.2 58.2 -3.1 -8.3 15 261 A L < - 0 0 11 -5,-0.6 5,-0.2 1,-0.1 -1,-0.1 -0.066 57.0 -58.6 -62.0 173.0 56.9 0.0 -6.6 16 262 A S >> - 0 0 16 35,-0.3 4,-1.8 36,-0.3 3,-0.9 -0.145 52.7-115.8 -51.2 149.6 57.4 3.4 -8.4 17 263 A T H 3> S+ 0 0 113 1,-0.3 4,-1.6 2,-0.2 5,-0.3 0.952 116.6 62.5 -56.3 -47.2 61.0 4.2 -9.0 18 264 A R H 3> S+ 0 0 178 1,-0.2 4,-1.5 2,-0.2 5,-0.5 0.870 105.1 50.3 -47.1 -34.1 60.9 7.2 -6.7 19 265 A V H <>>S+ 0 0 0 -3,-0.9 5,-1.1 3,-0.2 4,-1.1 0.983 103.1 56.8 -70.1 -56.3 60.0 4.6 -4.0 20 266 A L H X5S+ 0 0 44 -4,-1.8 4,-1.7 3,-0.2 5,-0.4 0.921 117.7 33.3 -39.1 -64.9 63.0 2.2 -4.8 21 267 A H H X5S+ 0 0 134 -4,-1.6 4,-2.1 3,-0.2 5,-0.3 0.995 128.5 35.6 -59.2 -68.6 65.6 5.0 -4.2 22 268 A S H X5S+ 0 0 24 -4,-1.5 4,-1.6 -5,-0.3 6,-0.3 0.978 122.8 42.4 -52.1 -70.6 63.8 7.0 -1.5 23 269 A L H ><>S+ 0 0 0 -4,-1.1 5,-1.8 -5,-0.5 3,-0.7 0.934 117.6 49.6 -43.6 -54.9 62.2 4.1 0.4 24 270 A K H >X S- 0 0 28 -21,-0.4 4,-2.3 -20,-0.1 5,-0.2 -0.974 86.1-107.4-155.1 167.6 61.2 -3.9 2.2 31 277 A V H > S+ 0 0 0 -23,-2.2 4,-1.6 -2,-0.3 5,-0.1 0.790 116.0 64.4 -72.6 -23.2 57.5 -4.0 2.3 32 278 A R H > S+ 0 0 149 -24,-0.5 4,-2.0 2,-0.2 3,-0.2 0.973 107.4 40.3 -63.9 -48.9 57.7 -4.5 6.1 33 279 A A H > S+ 0 0 24 1,-0.3 4,-2.3 2,-0.2 -2,-0.2 0.956 111.6 56.4 -63.9 -45.4 59.3 -1.0 6.4 34 280 A L H < S+ 0 0 0 -4,-2.3 -1,-0.3 1,-0.3 -2,-0.2 0.843 108.1 50.9 -55.0 -27.5 56.9 0.3 3.8 35 281 A L H < S+ 0 0 38 -4,-1.6 -1,-0.3 -3,-0.2 -2,-0.2 0.885 104.6 54.6 -77.8 -38.2 54.2 -1.0 6.2 36 282 A A H < S+ 0 0 48 -4,-2.0 2,-1.6 -3,-0.2 -2,-0.2 0.891 83.8 93.7 -63.5 -35.7 55.8 0.8 9.2 37 283 A L S < S- 0 0 6 -4,-2.3 4,-0.2 -5,-0.2 5,-0.2 -0.340 70.6-163.9 -59.1 89.9 55.6 4.1 7.3 38 284 A N >> - 0 0 77 -2,-1.6 4,-2.3 2,-0.1 3,-1.8 0.092 42.5 -78.9 -63.9-172.0 52.2 5.1 8.7 39 285 A L H 3> S+ 0 0 109 1,-0.3 4,-0.7 2,-0.2 5,-0.1 0.883 137.8 50.7 -60.9 -34.3 50.1 7.9 7.0 40 286 A K H 34 S+ 0 0 189 3,-0.1 -1,-0.3 1,-0.1 -2,-0.1 0.075 116.5 43.5 -90.6 27.4 52.4 10.5 8.7 41 287 A D H <> S+ 0 0 53 -3,-1.8 4,-2.3 -4,-0.2 -2,-0.2 0.544 109.5 44.9-132.7 -57.6 55.4 8.6 7.4 42 288 A L H < S+ 0 0 3 -4,-2.3 3,-0.2 1,-0.3 -3,-0.1 0.970 122.7 39.8 -58.4 -51.8 55.0 7.5 3.7 43 289 A K T < S+ 0 0 168 -4,-0.7 -1,-0.3 -5,-0.4 -3,-0.1 0.667 111.4 62.5 -72.5 -12.3 53.6 10.9 2.8 44 290 A N T 4 S+ 0 0 115 -3,-0.1 -2,-0.2 -5,-0.1 -1,-0.2 0.898 74.8 104.4 -79.8 -40.1 56.2 12.5 5.1 45 291 A I S >< S- 0 0 4 -4,-2.3 3,-1.4 -3,-0.2 -22,-0.1 -0.149 71.2-140.5 -43.0 128.4 59.2 11.2 3.1 46 292 A P T 3 S+ 0 0 128 0, 0.0 -1,-0.2 0, 0.0 -3,-0.1 0.430 102.3 49.5 -74.9 1.9 60.6 14.1 1.1 47 293 A G T 3 S+ 0 0 29 2,-0.0 2,-0.5 -28,-0.0 -25,-0.2 0.102 91.5 94.6-125.6 20.2 61.1 11.8 -1.8 48 294 A I < + 0 0 22 -3,-1.4 2,-0.2 -5,-0.1 -29,-0.0 -0.948 46.3 163.7-116.8 128.7 57.7 10.2 -1.9 49 295 A G >> - 0 0 40 -2,-0.5 4,-2.4 1,-0.0 3,-0.9 -0.566 56.6 -76.7-126.8-167.3 54.9 11.5 -4.1 50 296 A E H 3> S+ 0 0 167 1,-0.3 4,-2.3 2,-0.2 5,-0.2 0.927 127.5 60.9 -62.6 -41.9 51.5 10.3 -5.5 51 297 A R H 3> S+ 0 0 179 1,-0.2 4,-0.9 2,-0.2 -35,-0.3 0.786 111.2 42.8 -57.0 -22.2 53.3 8.0 -8.0 52 298 A S H <> S+ 0 0 0 -3,-0.9 4,-2.5 2,-0.2 -36,-0.3 0.912 107.4 54.7 -89.9 -51.5 54.8 6.3 -4.9 53 299 A L H X S+ 0 0 59 -4,-2.4 4,-2.4 1,-0.2 5,-0.2 0.881 107.1 57.1 -50.4 -36.1 51.8 6.1 -2.6 54 300 A E H X S+ 0 0 109 -4,-2.3 4,-2.4 -5,-0.2 5,-0.2 0.998 108.3 41.4 -60.1 -66.9 50.0 4.3 -5.5 55 301 A E H X S+ 0 0 31 -4,-0.9 4,-2.3 1,-0.2 5,-0.2 0.943 112.5 57.0 -47.0 -52.8 52.5 1.4 -5.9 56 302 A I H >X S+ 0 0 0 -4,-2.5 4,-2.2 1,-0.2 3,-0.7 0.950 106.4 49.1 -43.5 -59.5 52.8 1.1 -2.1 57 303 A K H 3X S+ 0 0 95 -4,-2.4 4,-1.7 1,-0.3 5,-0.3 0.949 105.2 57.6 -46.8 -54.0 49.1 0.6 -1.9 58 304 A E H >X S+ 0 0 109 -4,-2.4 4,-1.4 1,-0.3 3,-0.5 0.913 106.2 51.1 -45.0 -43.7 49.3 -2.1 -4.6 59 305 A A H XX S+ 0 0 5 -4,-2.3 4,-2.3 -3,-0.7 3,-0.9 0.960 108.1 49.2 -61.2 -48.2 51.8 -3.8 -2.3 60 306 A L H 3X S+ 0 0 6 -4,-2.2 4,-0.5 1,-0.3 -1,-0.3 0.710 108.6 57.4 -65.0 -13.3 49.3 -3.6 0.6 61 307 A E H << S+ 0 0 132 -4,-1.7 -1,-0.3 -3,-0.5 -2,-0.2 0.779 107.2 45.8 -86.1 -26.8 46.8 -5.0 -1.9 62 308 A K H << S+ 0 0 160 -4,-1.4 -2,-0.2 -3,-0.9 -3,-0.1 0.853 132.2 20.4 -83.2 -35.0 49.0 -8.1 -2.6 63 309 A K H < S- 0 0 56 -4,-2.3 -3,-0.2 -5,-0.2 -2,-0.2 0.836 91.2-143.6 -99.5 -44.5 49.7 -8.8 1.1 64 310 A G < + 0 0 53 -4,-0.5 2,-0.2 -5,-0.5 -3,-0.1 0.819 41.2 153.9 86.4 32.2 46.8 -6.9 2.7 65 311 A F - 0 0 25 -6,-0.2 -1,-0.2 1,-0.1 3,-0.1 -0.512 29.6-148.7 -90.7 163.3 48.6 -5.6 5.8 66 312 A T + 0 0 92 -2,-0.2 -1,-0.1 1,-0.1 -2,-0.0 0.063 59.8 104.1-106.2-142.4 47.7 -2.4 7.7 67 313 A L S S+ 0 0 82 1,-0.0 -1,-0.1 -2,-0.0 -28,-0.1 0.455 93.4 57.0 78.6 -3.5 49.8 0.1 9.6 68 314 A K 0 0 13 -30,-0.2 -8,-0.1 -3,-0.1 -32,-0.1 -0.111 360.0 360.0-150.5 43.9 49.4 2.4 6.6 69 315 A E 0 0 162 0, 0.0 -3,-0.1 0, 0.0 -31,-0.0 0.177 360.0 360.0-158.1 360.0 45.6 2.9 6.1