==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 27-APR-06 2DO3 . COMPND 2 MOLECULE: TRANSCRIPTION ELONGATION FACTOR SPT5; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR W.TANABE,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, . 69 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5943.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 38 55.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 29.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 15.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 5.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 455 A G 0 0 137 0, 0.0 2,-0.1 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 174.1 -24.3 -3.5 -10.4 2 456 A S - 0 0 122 1,-0.2 2,-0.1 0, 0.0 0, 0.0 -0.453 360.0 -65.7 -98.1 173.1 -22.6 -6.3 -12.4 3 457 A S S S+ 0 0 126 -2,-0.1 2,-0.3 2,-0.0 -1,-0.2 -0.337 77.9 120.6 -60.0 132.1 -19.1 -7.7 -12.2 4 458 A G - 0 0 71 1,-0.1 3,-0.0 -3,-0.1 -1,-0.0 -0.976 62.6-115.9-173.8-178.2 -16.5 -5.1 -13.3 5 459 A S S S+ 0 0 130 -2,-0.3 2,-0.3 1,-0.1 -1,-0.1 0.833 88.6 74.2-102.1 -51.9 -13.4 -3.0 -12.4 6 460 A S - 0 0 129 2,-0.0 2,-0.3 1,-0.0 -1,-0.1 -0.496 67.3-170.7 -69.1 125.9 -14.6 0.6 -12.5 7 461 A G - 0 0 33 -2,-0.3 2,-2.2 2,-0.1 -2,-0.0 -0.775 41.0 -78.5-118.0 163.5 -16.8 1.4 -9.5 8 462 A E + 0 0 192 -2,-0.3 3,-0.1 1,-0.1 -2,-0.0 -0.336 69.8 147.2 -59.8 81.9 -19.0 4.3 -8.4 9 463 A F + 0 0 155 -2,-2.2 -1,-0.1 1,-0.1 -2,-0.1 -0.656 12.2 161.6-123.4 74.9 -16.1 6.5 -7.3 10 464 A P + 0 0 118 0, 0.0 2,-0.7 0, 0.0 -1,-0.1 0.531 63.8 77.4 -69.7 -5.2 -17.2 10.1 -8.1 11 465 A A - 0 0 73 -3,-0.1 2,-0.9 2,-0.1 0, 0.0 -0.896 58.7-179.3-112.8 104.8 -14.4 11.2 -5.7 12 466 A Q + 0 0 157 -2,-0.7 2,-0.9 2,-0.1 -3,-0.0 -0.763 5.8 176.1-105.3 87.2 -10.9 11.0 -7.1 13 467 A E - 0 0 132 -2,-0.9 2,-0.9 2,-0.0 -2,-0.1 -0.793 11.9-163.7 -95.6 101.4 -8.6 12.2 -4.3 14 468 A L + 0 0 146 -2,-0.9 2,-0.4 54,-0.0 3,-0.1 -0.745 23.2 157.7 -88.5 104.1 -5.0 11.8 -5.5 15 469 A R - 0 0 132 -2,-0.9 4,-0.2 2,-0.2 54,-0.1 -0.993 43.6-142.7-131.9 132.9 -2.7 11.9 -2.5 16 470 A K S S+ 0 0 127 -2,-0.4 50,-0.2 2,-0.1 -1,-0.1 0.885 75.3 105.0 -56.9 -40.6 0.8 10.6 -2.1 17 471 A Y S S- 0 0 150 1,-0.2 2,-0.2 -3,-0.1 -2,-0.2 -0.211 89.0-112.0 -47.2 109.5 0.1 9.6 1.4 18 472 A F - 0 0 38 -2,-0.1 2,-0.3 43,-0.1 -1,-0.2 -0.260 48.4-178.4 -50.2 110.1 -0.3 5.8 1.2 19 473 A K > - 0 0 104 -4,-0.2 3,-1.6 -2,-0.2 19,-0.3 -0.778 33.3 -83.9-114.4 159.5 -4.0 5.2 1.8 20 474 A M T 3 S+ 0 0 136 -2,-0.3 19,-0.2 1,-0.2 3,-0.1 -0.237 113.4 30.3 -59.1 146.5 -6.1 2.1 2.0 21 475 A G T 3 S+ 0 0 57 17,-2.5 -1,-0.2 1,-0.3 2,-0.2 0.193 98.0 110.1 89.0 -17.6 -7.4 0.7 -1.3 22 476 A D < - 0 0 63 -3,-1.6 16,-2.0 16,-0.1 2,-0.3 -0.611 69.6-119.2 -92.2 152.3 -4.3 2.1 -3.1 23 477 A H E -A 37 0A 62 -2,-0.2 44,-1.3 14,-0.2 45,-0.4 -0.723 31.6-176.9 -93.0 139.1 -1.6 -0.1 -4.5 24 478 A V E -AB 36 66A 0 12,-2.8 12,-2.3 -2,-0.3 2,-0.3 -0.968 12.6-146.1-135.7 151.0 2.0 0.3 -3.3 25 479 A K E -AB 35 65A 74 40,-2.9 40,-1.6 -2,-0.3 2,-0.7 -0.778 17.8-122.1-114.7 159.7 5.4 -1.3 -4.2 26 480 A V E + B 0 64A 1 8,-2.8 7,-2.5 -2,-0.3 8,-0.3 -0.888 32.8 163.7-106.2 111.1 8.4 -2.2 -2.1 27 481 A I S S+ 0 0 63 36,-2.1 2,-0.2 -2,-0.7 37,-0.2 0.758 70.6 10.4 -93.0 -30.4 11.6 -0.5 -3.2 28 482 A A S S+ 0 0 34 35,-1.6 3,-0.4 3,-0.1 2,-0.2 -0.787 89.3 62.1-138.0-179.3 13.6 -1.2 0.0 29 483 A G S > S- 0 0 43 -2,-0.2 3,-1.0 1,-0.2 30,-0.1 -0.520 102.8 -44.0 97.3-167.0 13.4 -3.2 3.2 30 484 A R T 3 S+ 0 0 236 1,-0.2 -1,-0.2 -2,-0.2 29,-0.0 0.384 140.1 49.9 -82.4 4.2 13.2 -7.0 3.8 31 485 A F T > S+ 0 0 67 -3,-0.4 3,-2.0 3,-0.1 2,-0.2 0.012 73.4 160.4-129.2 25.6 10.7 -7.2 1.0 32 486 A E T < S+ 0 0 145 -3,-1.0 -5,-0.2 1,-0.3 -3,-0.1 -0.322 71.2 28.9 -54.5 112.9 12.5 -5.2 -1.7 33 487 A G T 3 S+ 0 0 55 -7,-2.5 2,-0.3 1,-0.4 -1,-0.3 0.456 96.5 113.0 112.7 5.4 10.9 -6.2 -5.0 34 488 A D < - 0 0 46 -3,-2.0 -8,-2.8 -8,-0.3 -1,-0.4 -0.796 41.7-170.4-110.5 153.0 7.4 -7.0 -3.6 35 489 A T E +A 25 0A 41 -2,-0.3 16,-0.8 -10,-0.2 17,-0.3 -0.912 15.8 135.8-137.5 164.1 4.1 -5.3 -4.3 36 490 A G E -AC 24 50A 2 -12,-2.3 -12,-2.8 -2,-0.3 14,-0.2 -0.982 45.4 -70.6 177.8-173.9 0.6 -5.3 -3.0 37 491 A L E -AC 23 49A 85 12,-2.1 12,-2.2 -2,-0.3 2,-0.7 -0.619 44.2-107.0-101.5 162.5 -2.5 -3.3 -1.9 38 492 A I E + C 0 48A 3 -16,-2.0 -17,-2.5 10,-0.3 10,-0.2 -0.801 43.8 157.1 -93.5 114.8 -3.0 -1.2 1.3 39 493 A V E + 0 0 66 8,-1.6 2,-0.3 -2,-0.7 9,-0.2 0.692 69.8 19.2-104.9 -28.5 -5.3 -2.9 3.8 40 494 A R E - C 0 47A 179 7,-2.2 7,-2.0 -21,-0.1 2,-0.4 -0.999 62.7-164.8-146.4 142.4 -4.1 -1.1 6.9 41 495 A V E - C 0 46A 66 -2,-0.3 2,-0.3 5,-0.2 5,-0.2 -0.977 7.7-179.2-130.5 142.8 -2.2 2.1 7.7 42 496 A E - 0 0 52 3,-1.8 -2,-0.0 -2,-0.4 0, 0.0 -0.939 41.6-114.2-137.7 159.5 -0.5 3.4 10.8 43 497 A E S S+ 0 0 212 -2,-0.3 3,-0.1 1,-0.2 -1,-0.0 0.701 119.7 38.6 -64.6 -18.6 1.4 6.4 12.0 44 498 A N S S- 0 0 112 1,-0.3 2,-0.2 16,-0.0 -1,-0.2 0.896 129.9 -13.3 -94.9 -61.0 4.4 4.1 12.3 45 499 A F - 0 0 45 15,-0.2 -3,-1.8 16,-0.1 2,-0.4 -0.772 62.1-116.2-135.2 179.7 4.2 1.7 9.3 46 500 A V E -CD 41 59A 4 13,-2.8 13,-1.6 -2,-0.2 2,-0.6 -0.986 16.2-144.0-127.9 129.1 1.8 0.6 6.6 47 501 A I E -CD 40 58A 27 -7,-2.0 -7,-2.2 -2,-0.4 -8,-1.6 -0.810 20.8-175.1 -94.6 118.8 0.4 -2.9 6.2 48 502 A L E -CD 38 57A 0 9,-2.0 9,-2.7 -2,-0.6 2,-0.5 -0.931 24.2-125.7-116.6 137.0 -0.1 -4.0 2.6 49 503 A F E -CD 37 56A 82 -12,-2.2 -12,-2.1 -2,-0.4 7,-0.2 -0.685 26.5-138.6 -82.9 121.5 -1.7 -7.2 1.4 50 504 A S E -C 36 0A 0 5,-2.9 -14,-0.2 -2,-0.5 -1,-0.0 -0.446 9.8-156.9 -78.5 151.9 0.6 -9.2 -0.9 51 505 A D S S+ 0 0 99 -16,-0.8 -1,-0.1 3,-0.1 -15,-0.1 0.543 91.0 48.9-102.8 -12.8 -0.8 -10.9 -4.0 52 506 A L S S+ 0 0 126 -17,-0.3 -16,-0.1 3,-0.1 -2,-0.0 0.907 123.9 25.5 -90.7 -54.9 2.0 -13.5 -4.3 53 507 A T S S- 0 0 64 2,-0.1 -2,-0.1 0, 0.0 3,-0.1 0.590 96.7-136.0 -85.4 -11.9 2.2 -14.8 -0.7 54 508 A M + 0 0 136 1,-0.2 2,-0.2 -5,-0.0 -3,-0.1 0.868 67.2 108.4 58.3 37.9 -1.4 -14.0 -0.1 55 509 A H S S- 0 0 117 -7,-0.1 -5,-2.9 0, 0.0 2,-0.6 -0.725 77.3 -88.5-132.5-178.0 -0.4 -12.6 3.3 56 510 A E E -D 49 0A 125 -7,-0.2 2,-0.4 -2,-0.2 -7,-0.2 -0.872 36.5-158.1-102.3 117.9 -0.0 -9.2 5.1 57 511 A L E -D 48 0A 14 -9,-2.7 -9,-2.0 -2,-0.6 2,-0.7 -0.786 4.4-149.4 -97.2 135.3 3.4 -7.6 4.8 58 512 A K E +D 47 0A 124 -2,-0.4 2,-0.3 -11,-0.2 -11,-0.2 -0.899 34.3 143.9-107.9 111.7 4.5 -5.0 7.4 59 513 A V E -D 46 0A 11 -13,-1.6 -13,-2.8 -2,-0.7 -30,-0.1 -0.952 47.4 -99.9-142.7 161.2 6.8 -2.3 6.1 60 514 A L > - 0 0 58 -2,-0.3 3,-1.7 -15,-0.2 -15,-0.2 -0.494 27.2-123.4 -82.4 151.5 7.5 1.4 6.6 61 515 A P T 3 S+ 0 0 58 0, 0.0 3,-0.2 0, 0.0 -1,-0.1 0.531 108.2 70.6 -69.7 -5.2 6.2 4.1 4.2 62 516 A R T 3 S+ 0 0 197 1,-0.2 -17,-0.0 3,-0.0 -2,-0.0 0.597 102.5 41.1 -86.7 -13.0 9.8 5.2 3.7 63 517 A D S < S+ 0 0 34 -3,-1.7 -36,-2.1 -35,-0.1 -35,-1.6 0.236 107.1 78.5-115.6 9.1 10.6 2.0 1.7 64 518 A L E -B 26 0A 9 -3,-0.2 2,-0.3 -38,-0.2 -38,-0.2 -0.705 55.4-166.2-115.1 168.0 7.3 1.9 -0.3 65 519 A Q E -B 25 0A 80 -40,-1.6 -40,-2.9 -2,-0.2 -3,-0.0 -0.929 23.0-116.4-158.4 130.0 6.0 3.8 -3.3 66 520 A L E -B 24 0A 23 -2,-0.3 -42,-0.2 -42,-0.2 -50,-0.0 -0.088 13.8-152.9 -59.8 163.9 2.6 4.2 -4.9 67 521 A C S S+ 0 0 88 -44,-1.3 -1,-0.1 2,-0.1 -43,-0.1 0.780 90.4 40.9-106.9 -45.6 1.9 2.9 -8.4 68 522 A S 0 0 106 -45,-0.4 -44,-0.1 1,-0.2 -54,-0.0 0.932 360.0 360.0 -70.5 -47.5 -0.9 5.1 -9.7 69 523 A E 0 0 144 -54,-0.1 -1,-0.2 -53,-0.1 -2,-0.1 0.790 360.0 360.0 -57.7 360.0 0.6 8.3 -8.3