==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER IMMUNE SYSTEM 27-APR-06 2DO4 . COMPND 2 MOLECULE: SQUAMOUS CELL CARCINOMA ANTIGEN RECOGNIZED BY T- . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR W.TANABE,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, . 100 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7554.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 52.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 21.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 10.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 16.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 784 A G 0 0 124 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 172.4 17.5 -5.2 -12.3 2 785 A S - 0 0 126 1,-0.1 2,-0.4 2,-0.0 0, 0.0 -0.062 360.0-130.6 -66.5 173.3 18.2 -2.5 -14.9 3 786 A S - 0 0 119 0, 0.0 2,-0.8 0, 0.0 -1,-0.1 -0.885 12.4-159.6-134.7 103.1 15.4 -0.8 -16.9 4 787 A G - 0 0 63 -2,-0.4 -2,-0.0 1,-0.2 0, 0.0 -0.724 7.4-175.6 -86.5 108.8 15.8 -0.6 -20.7 5 788 A S + 0 0 122 -2,-0.8 2,-0.6 3,-0.1 -1,-0.2 0.932 66.2 81.4 -66.6 -47.4 13.6 2.1 -22.1 6 789 A S S S- 0 0 127 2,-0.0 -1,-0.0 0, 0.0 -2,-0.0 -0.475 108.5 -15.3 -65.0 109.2 14.4 1.4 -25.7 7 790 A G S S- 0 0 57 -2,-0.6 2,-0.4 1,-0.1 -3,-0.0 0.376 72.9-127.4 73.0 147.8 12.2 -1.5 -26.6 8 791 A V + 0 0 127 2,-0.0 2,-0.3 0, 0.0 -1,-0.1 -0.990 23.9 178.0-134.7 141.8 10.3 -3.8 -24.3 9 792 A F - 0 0 182 -2,-0.4 2,-0.7 0, 0.0 -2,-0.0 -0.821 34.5 -99.5-134.1 173.3 10.3 -7.6 -23.9 10 793 A R + 0 0 197 -2,-0.3 3,-0.1 1,-0.2 4,-0.0 -0.867 56.6 133.6-101.8 114.5 8.7 -10.3 -21.7 11 794 A Y + 0 0 222 -2,-0.7 2,-0.4 1,-0.4 -1,-0.2 0.657 68.7 25.7-123.1 -46.8 11.0 -11.6 -19.0 12 795 A S S S- 0 0 70 1,-0.1 -1,-0.4 3,-0.0 3,-0.2 -0.966 93.9 -86.2-127.6 142.5 9.0 -11.7 -15.7 13 796 A T S S- 0 0 90 -2,-0.4 -1,-0.1 1,-0.1 -2,-0.1 0.112 70.2 -67.2 -37.7 155.6 5.2 -11.9 -15.1 14 797 A S - 0 0 85 1,-0.1 2,-0.3 -4,-0.0 -1,-0.1 -0.230 57.1-140.1 -52.2 131.3 3.3 -8.6 -15.1 15 798 A L - 0 0 105 -3,-0.2 2,-0.3 81,-0.1 80,-0.1 -0.705 7.5-128.8 -98.1 149.2 4.4 -6.5 -12.2 16 799 A E + 0 0 44 78,-0.4 -1,-0.0 -2,-0.3 0, 0.0 -0.760 34.4 157.6 -98.7 142.5 2.0 -4.3 -10.1 17 800 A K + 0 0 97 -2,-0.3 76,-0.2 3,-0.0 -1,-0.1 0.611 66.5 67.4-127.3 -43.8 2.6 -0.7 -9.3 18 801 A H S S+ 0 0 70 74,-0.1 75,-0.1 48,-0.1 49,-0.1 0.887 85.3 90.2 -48.6 -44.4 -0.7 0.9 -8.5 19 802 A K - 0 0 69 74,-0.2 74,-0.8 45,-0.1 2,-0.3 -0.152 68.7-150.9 -54.5 149.0 -0.8 -1.2 -5.3 20 803 A L E -AB 63 92A 3 43,-2.0 43,-1.9 72,-0.2 2,-0.4 -0.936 5.8-149.9-127.4 150.2 0.7 0.4 -2.2 21 804 A F E -AB 62 91A 44 70,-2.4 70,-2.6 -2,-0.3 2,-0.5 -0.977 10.7-174.0-123.8 128.3 2.4 -1.1 0.9 22 805 A I E +AB 61 90A 2 39,-2.4 39,-1.9 -2,-0.4 2,-0.3 -0.976 6.3 179.4-125.3 122.5 2.4 0.5 4.3 23 806 A S E + B 0 89A 33 66,-2.0 66,-2.0 -2,-0.5 37,-0.2 -0.823 54.5 46.2-119.1 158.7 4.4 -0.8 7.3 24 807 A G S S+ 0 0 38 -2,-0.3 -1,-0.2 1,-0.2 35,-0.1 0.941 70.5 157.9 78.6 50.4 4.8 0.3 10.9 25 808 A L - 0 0 15 34,-0.3 2,-0.3 -3,-0.2 -1,-0.2 -0.857 45.5-107.2-110.9 144.0 1.1 0.9 11.7 26 809 A P > - 0 0 18 0, 0.0 3,-1.6 0, 0.0 33,-0.1 -0.489 22.5-129.3 -69.8 128.0 -0.4 0.9 15.2 27 810 A F T 3 S+ 0 0 160 1,-0.3 32,-0.1 -2,-0.3 31,-0.0 0.832 108.9 64.7 -43.7 -37.6 -2.6 -2.1 16.0 28 811 A S T 3 S+ 0 0 94 56,-0.1 -1,-0.3 2,-0.1 56,-0.1 0.914 78.7 103.5 -54.1 -46.7 -5.3 0.4 17.0 29 812 A C < - 0 0 22 -3,-1.6 2,-0.3 54,-0.1 30,-0.1 0.036 61.7-152.9 -37.7 142.7 -5.5 1.7 13.5 30 813 A T > - 0 0 62 1,-0.1 4,-1.8 0, 0.0 5,-0.2 -0.898 24.1-113.3-125.8 155.2 -8.6 0.4 11.7 31 814 A K H > S+ 0 0 79 -2,-0.3 4,-3.0 1,-0.2 3,-0.2 0.953 114.4 54.2 -46.8 -65.4 -9.5 -0.3 8.0 32 815 A E H > S+ 0 0 137 1,-0.2 4,-3.0 2,-0.2 5,-0.3 0.875 106.1 54.3 -35.5 -58.0 -12.1 2.5 7.8 33 816 A E H > S+ 0 0 40 1,-0.3 4,-2.2 2,-0.2 -1,-0.2 0.932 112.9 40.6 -43.6 -62.5 -9.6 5.0 9.1 34 817 A L H X S+ 0 0 0 -4,-1.8 4,-2.5 -3,-0.2 -1,-0.3 0.855 113.9 57.3 -57.1 -36.3 -7.1 4.2 6.4 35 818 A E H X S+ 0 0 95 -4,-3.0 4,-2.8 -5,-0.2 5,-0.3 0.972 107.6 43.7 -59.4 -57.9 -10.0 3.9 3.9 36 819 A E H < S+ 0 0 105 -4,-3.0 4,-0.3 1,-0.2 -1,-0.2 0.868 117.2 48.1 -56.2 -38.3 -11.2 7.5 4.5 37 820 A I H < S+ 0 0 47 -4,-2.2 4,-0.3 -5,-0.3 -1,-0.2 0.833 111.5 50.5 -71.9 -33.3 -7.6 8.7 4.4 38 821 A C H >X S+ 0 0 0 -4,-2.5 3,-2.3 1,-0.2 4,-1.4 0.951 106.1 52.0 -69.5 -51.3 -6.9 6.8 1.2 39 822 A K T 3< S+ 0 0 133 -4,-2.8 -1,-0.2 1,-0.3 -2,-0.2 0.616 95.0 76.9 -61.5 -10.2 -9.9 8.0 -0.7 40 823 A A T 34 S+ 0 0 74 -4,-0.3 -1,-0.3 -5,-0.3 -2,-0.2 0.749 102.8 34.7 -71.7 -24.2 -8.6 11.5 0.3 41 824 A H T <4 S- 0 0 40 -3,-2.3 2,-0.2 -4,-0.3 -2,-0.2 0.863 131.4 -43.9 -95.2 -48.7 -6.0 11.2 -2.4 42 825 A G S < S- 0 0 11 -4,-1.4 2,-0.5 29,-0.0 -1,-0.2 -0.732 86.0 -31.3-157.1-154.1 -7.8 9.3 -5.1 43 826 A T - 0 0 60 -2,-0.2 23,-1.1 -3,-0.1 2,-0.9 -0.698 49.4-144.6 -84.9 124.6 -10.1 6.4 -5.9 44 827 A V E +C 65 0A 36 -2,-0.5 21,-0.3 21,-0.2 3,-0.1 -0.771 19.4 178.4 -92.6 102.0 -9.7 3.4 -3.6 45 828 A K E - 0 0 113 19,-1.9 2,-0.3 -2,-0.9 20,-0.2 0.932 68.7 -20.4 -66.5 -47.3 -10.2 0.2 -5.6 46 829 A D E -C 64 0A 90 18,-1.6 18,-2.5 2,-0.0 2,-0.4 -0.983 55.8-155.8-162.0 153.2 -9.6 -2.1 -2.6 47 830 A L E +C 63 0A 6 -2,-0.3 2,-0.4 16,-0.2 16,-0.2 -0.995 12.3 177.5-139.6 131.5 -8.0 -2.1 0.8 48 831 A R E -C 62 0A 169 14,-2.3 14,-2.8 -2,-0.4 2,-0.5 -0.988 17.0-147.7-135.3 143.5 -6.6 -5.0 2.8 49 832 A L E -C 61 0A 46 -2,-0.4 2,-0.6 12,-0.2 12,-0.2 -0.943 24.2-123.3-115.1 119.6 -4.9 -5.2 6.2 50 833 A V E - 0 0 40 10,-1.4 8,-2.3 -2,-0.5 9,-0.4 -0.431 41.0-177.6 -61.8 107.0 -2.3 -7.9 6.8 51 834 A T E -C 57 0A 82 -2,-0.6 2,-0.1 6,-0.2 -1,-0.0 -0.560 20.6-114.8-104.1 170.1 -3.6 -9.7 9.9 52 835 A N > - 0 0 75 4,-2.0 3,-1.8 -2,-0.2 -1,-0.1 -0.380 39.0 -91.0 -96.7 177.8 -2.2 -12.6 12.0 53 836 A R T 3 S+ 0 0 245 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.804 132.0 47.3 -58.2 -29.6 -3.4 -16.1 12.5 54 837 A A T 3 S- 0 0 85 2,-0.1 -1,-0.3 0, 0.0 -3,-0.0 0.465 127.2-101.9 -90.4 -3.3 -5.3 -14.8 15.5 55 838 A G S < S+ 0 0 48 -3,-1.8 -2,-0.1 1,-0.3 -4,-0.0 0.653 74.3 145.7 91.1 17.7 -6.7 -11.9 13.5 56 839 A K - 0 0 134 1,-0.1 -4,-2.0 2,-0.0 2,-0.5 -0.668 56.9-104.9 -91.5 143.7 -4.2 -9.4 14.9 57 840 A P E - C 0 51A 47 0, 0.0 -6,-0.2 0, 0.0 -30,-0.1 -0.527 22.7-163.6 -69.7 116.4 -2.8 -6.5 12.9 58 841 A K E - 0 0 120 -8,-2.3 -34,-0.2 -2,-0.5 -7,-0.1 0.508 47.3-109.7 -77.5 -4.0 0.8 -7.2 11.9 59 842 A G E S+ 0 0 11 -9,-0.4 -34,-0.3 1,-0.4 2,-0.2 0.025 86.2 112.7 99.2 -27.3 1.2 -3.6 11.1 60 843 A L E - 0 0 58 -10,-0.3 -10,-1.4 -37,-0.2 -1,-0.4 -0.565 42.2-179.8 -81.8 143.1 1.4 -4.1 7.3 61 844 A A E -AC 22 49A 1 -39,-1.9 -39,-2.4 -12,-0.2 2,-0.3 -0.994 14.6-149.8-146.6 137.0 -1.4 -2.9 5.1 62 845 A Y E -AC 21 48A 86 -14,-2.8 -14,-2.3 -2,-0.3 2,-0.3 -0.814 11.8-165.6-108.1 147.4 -2.1 -3.1 1.3 63 846 A V E -AC 20 47A 0 -43,-1.9 -43,-2.0 -2,-0.3 2,-0.4 -0.953 7.1-155.5-131.9 151.1 -4.0 -0.5 -0.8 64 847 A E E - C 0 46A 26 -18,-2.5 -19,-1.9 -2,-0.3 -18,-1.6 -0.983 13.0-174.9-131.2 123.0 -5.4 -0.6 -4.3 65 848 A Y E - C 0 44A 5 -2,-0.4 -21,-0.2 -21,-0.3 -46,-0.1 -0.588 29.6-129.4-109.1 172.5 -6.1 2.5 -6.4 66 849 A E S S+ 0 0 115 -23,-1.1 2,-0.2 -2,-0.2 -1,-0.1 0.860 89.9 28.1 -88.1 -42.0 -7.7 3.1 -9.8 67 850 A N S > S- 0 0 96 -24,-0.2 4,-0.6 1,-0.1 -2,-0.1 -0.516 72.5-126.5-111.6-179.1 -5.0 5.2 -11.4 68 851 A E H > S+ 0 0 124 -2,-0.2 4,-2.3 2,-0.2 5,-0.1 0.844 104.5 55.0 -95.4 -44.7 -1.2 5.4 -11.0 69 852 A S H > S+ 0 0 93 1,-0.2 4,-2.1 2,-0.2 5,-0.2 0.889 106.3 54.7 -56.6 -41.4 -0.8 9.2 -10.4 70 853 A Q H > S+ 0 0 39 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.956 108.2 46.8 -57.8 -54.1 -3.3 8.9 -7.5 71 854 A A H X S+ 0 0 2 -4,-0.6 4,-2.2 1,-0.2 -1,-0.2 0.910 108.6 56.8 -55.0 -45.8 -1.3 6.2 -5.7 72 855 A S H X S+ 0 0 66 -4,-2.3 4,-2.3 1,-0.2 3,-0.2 0.938 107.1 47.8 -51.6 -53.5 1.9 8.1 -6.2 73 856 A Q H X S+ 0 0 116 -4,-2.1 4,-1.8 1,-0.2 -1,-0.2 0.938 111.0 50.4 -54.1 -51.8 0.5 11.2 -4.4 74 857 A A H X S+ 0 0 1 -4,-2.1 4,-3.0 1,-0.2 5,-0.3 0.833 110.9 51.1 -56.7 -33.7 -0.8 9.2 -1.5 75 858 A V H X S+ 0 0 20 -4,-2.2 4,-1.8 -3,-0.2 -1,-0.2 0.873 106.9 52.0 -72.1 -38.5 2.6 7.5 -1.2 76 859 A M H < S+ 0 0 159 -4,-2.3 -2,-0.2 -5,-0.2 -1,-0.2 0.800 121.2 34.3 -67.8 -29.0 4.4 10.9 -1.2 77 860 A K H < S+ 0 0 142 -4,-1.8 -2,-0.2 -5,-0.2 -3,-0.2 0.922 120.1 44.7 -89.4 -58.0 2.2 12.0 1.7 78 861 A M H >< S+ 0 0 4 -4,-3.0 3,-1.3 -5,-0.2 2,-0.2 0.850 89.5 104.5 -55.5 -35.9 1.6 8.8 3.6 79 862 A D T 3< S- 0 0 74 -4,-1.8 10,-0.2 -5,-0.3 -57,-0.0 -0.290 100.5 -2.3 -52.2 112.3 5.3 8.1 3.3 80 863 A G T 3 S+ 0 0 49 8,-0.8 2,-0.3 1,-0.2 -1,-0.3 0.942 98.0 154.9 68.7 48.8 6.7 8.9 6.8 81 864 A M E < -D 88 0B 47 7,-1.7 7,-3.3 -3,-1.3 2,-0.5 -0.824 43.5-120.0-110.6 149.4 3.4 10.0 8.3 82 865 A T E +D 87 0B 83 -2,-0.3 2,-0.4 5,-0.2 5,-0.2 -0.744 30.4 178.9 -90.5 129.0 2.3 10.1 11.9 83 866 A I S S- 0 0 11 3,-2.0 -54,-0.1 -2,-0.5 -2,-0.0 -0.943 70.1 -23.7-135.0 113.3 -0.7 8.0 12.9 84 867 A K S S- 0 0 127 -2,-0.4 -56,-0.1 1,-0.2 -1,-0.1 0.844 131.0 -45.7 57.2 34.9 -2.0 7.7 16.4 85 868 A E S S+ 0 0 169 1,-0.2 2,-0.3 -59,-0.0 -1,-0.2 0.931 118.6 109.9 74.5 48.2 1.5 8.6 17.7 86 869 A N - 0 0 63 -60,-0.1 -3,-2.0 2,-0.0 2,-0.7 -0.831 65.2-132.8-158.2 114.0 3.3 6.2 15.3 87 870 A I E -D 82 0B 114 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.554 30.2-166.8 -70.9 111.3 5.5 7.1 12.4 88 871 A I E -D 81 0B 1 -7,-3.3 -7,-1.7 -2,-0.7 -8,-0.8 -0.782 6.6-147.3-102.8 145.2 4.4 4.9 9.5 89 872 A K E -B 23 0A 120 -66,-2.0 -66,-2.0 -2,-0.3 2,-0.3 -0.833 7.3-149.2-111.6 149.3 6.4 4.4 6.3 90 873 A V E -B 22 0A 6 -2,-0.3 2,-0.3 -68,-0.2 -68,-0.2 -0.802 13.0-180.0-115.7 157.9 5.0 3.7 2.8 91 874 A A E -B 21 0A 37 -70,-2.6 -70,-2.4 -2,-0.3 2,-0.4 -0.920 35.4-108.6-159.9 129.9 6.4 1.8 -0.2 92 875 A I E -B 20 0A 62 -2,-0.3 2,-1.9 -72,-0.2 3,-0.4 -0.427 38.7-119.6 -61.8 115.1 5.1 1.0 -3.7 93 876 A S + 0 0 11 -74,-0.8 -74,-0.2 -2,-0.4 -1,-0.1 -0.333 67.3 133.6 -58.9 83.9 4.2 -2.6 -3.8 94 877 A N + 0 0 78 -2,-1.9 -78,-0.4 -79,-0.1 2,-0.3 0.843 46.7 73.0-100.6 -51.9 6.6 -3.6 -6.5 95 878 A S + 0 0 120 -3,-0.4 3,-0.1 1,-0.1 -1,-0.0 -0.489 58.3 117.5 -69.8 129.6 8.3 -6.8 -5.2 96 879 A G + 0 0 57 -2,-0.3 2,-0.9 1,-0.2 -1,-0.1 0.101 53.3 52.1-149.7 -90.0 6.0 -9.8 -5.4 97 880 A P S S- 0 0 72 0, 0.0 2,-0.6 0, 0.0 -1,-0.2 -0.532 75.9-137.6 -69.7 102.1 6.5 -13.0 -7.4 98 881 A S + 0 0 119 -2,-0.9 -3,-0.0 1,-0.2 0, 0.0 -0.475 25.2 179.6 -65.1 110.2 10.0 -14.1 -6.5 99 882 A S 0 0 111 -2,-0.6 -1,-0.2 1,-0.1 -87,-0.0 0.975 360.0 360.0 -76.2 -60.7 11.6 -15.2 -9.8 100 883 A G 0 0 115 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.225 360.0 360.0 148.7 360.0 15.1 -16.3 -8.5