==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 28-APR-06 2DOA . COMPND 2 MOLECULE: RNA POLYMERASE II ELONGATION FACTOR ELL; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN . 104 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7058.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 55.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 6 5.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 40 38.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 64 0, 0.0 5,-0.1 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 66.7 -12.4 -15.0 -1.3 2 2 A S + 0 0 97 3,-0.5 2,-0.4 1,-0.1 4,-0.1 0.563 360.0 16.0-133.0 -47.3 -11.9 -16.4 -4.8 3 3 A S S S- 0 0 92 2,-0.6 2,-0.6 0, 0.0 -1,-0.1 -0.920 115.8 -54.6-140.8 112.0 -10.7 -20.0 -4.5 4 4 A G S S+ 0 0 89 -2,-0.4 2,-0.1 -3,-0.1 0, 0.0 -0.454 116.4 12.6 63.7-107.9 -10.8 -22.0 -1.3 5 5 A S S S- 0 0 107 -2,-0.6 -2,-0.6 -4,-0.1 -3,-0.5 -0.282 85.0-101.5 -92.4-179.1 -9.0 -19.9 1.3 6 6 A S + 0 0 81 -5,-0.1 2,-0.3 -4,-0.1 -1,-0.0 -0.885 38.0 176.9-109.6 137.2 -8.0 -16.3 1.2 7 7 A G - 0 0 30 -2,-0.4 4,-0.3 1,-0.1 74,-0.1 -0.990 30.3-155.0-140.5 148.6 -4.4 -15.1 0.5 8 8 A V S > S+ 0 0 29 -2,-0.3 3,-0.8 2,-0.2 -1,-0.1 0.770 94.0 65.3 -89.0 -30.3 -2.6 -11.8 0.1 9 9 A S T 3 S+ 0 0 76 1,-0.3 -1,-0.1 29,-0.1 7,-0.1 0.871 94.7 60.0 -59.5 -38.3 0.2 -13.2 -2.0 10 10 A Q T 3 S+ 0 0 156 0, 0.0 -1,-0.3 0, 0.0 -2,-0.2 0.820 93.9 82.9 -59.8 -31.4 -2.2 -14.0 -4.8 11 11 A R S < S- 0 0 57 -3,-0.8 -3,-0.0 -4,-0.3 5,-0.0 -0.365 92.1 -98.8 -73.6 154.3 -3.0 -10.3 -4.9 12 12 A P > - 0 0 71 0, 0.0 4,-0.6 0, 0.0 -1,-0.1 0.159 28.8-111.4 -59.9-175.1 -0.8 -7.9 -7.0 13 13 A F H > S+ 0 0 36 2,-0.2 4,-1.6 3,-0.1 5,-0.3 0.840 112.5 57.8 -90.2 -39.8 1.9 -5.7 -5.4 14 14 A R H > S+ 0 0 102 1,-0.2 4,-1.9 2,-0.2 -1,-0.1 0.836 109.9 46.8 -59.7 -33.6 0.2 -2.3 -6.0 15 15 A D H > S+ 0 0 46 2,-0.2 4,-1.8 1,-0.2 5,-0.3 0.828 104.0 61.1 -77.5 -33.6 -2.7 -3.6 -4.0 16 16 A R H X S+ 0 0 28 -4,-0.6 4,-0.7 1,-0.2 -2,-0.2 0.856 117.9 30.1 -61.3 -35.8 -0.5 -5.0 -1.2 17 17 A V H X S+ 0 0 0 -4,-1.6 4,-2.2 2,-0.2 5,-0.3 0.761 112.9 63.3 -93.3 -30.8 0.8 -1.5 -0.5 18 18 A L H X S+ 0 0 4 -4,-1.9 4,-0.5 -5,-0.3 -2,-0.2 0.810 109.9 41.7 -63.5 -30.1 -2.3 0.4 -1.6 19 19 A H H X S+ 0 0 1 -4,-1.8 4,-1.2 2,-0.2 -1,-0.2 0.833 110.3 56.6 -85.2 -36.5 -4.2 -1.3 1.3 20 20 A L H >X S+ 0 0 13 -4,-0.7 4,-1.0 -5,-0.3 3,-0.6 0.953 113.7 38.4 -59.7 -52.7 -1.4 -0.9 3.8 21 21 A L H 3< S+ 0 0 2 -4,-2.2 46,-0.6 1,-0.2 -1,-0.2 0.767 103.7 73.7 -70.0 -25.6 -1.1 2.9 3.5 22 22 A A H 3< S+ 0 0 0 -4,-0.5 -1,-0.2 -5,-0.3 -2,-0.2 0.871 100.3 44.3 -55.5 -39.2 -4.9 3.0 3.2 23 23 A L H << S- 0 0 15 -4,-1.2 -2,-0.2 -3,-0.6 -1,-0.1 0.998 130.4 -23.2 -69.0 -71.9 -5.2 2.4 6.9 24 24 A R S < S- 0 0 144 -4,-1.0 -1,-0.3 42,-0.0 66,-0.0 -0.955 83.8 -69.0-142.3 160.1 -2.6 4.6 8.4 25 25 A P - 0 0 76 0, 0.0 2,-0.4 0, 0.0 41,-0.2 -0.254 51.6-163.7 -51.8 122.3 0.7 6.4 7.3 26 26 A Y E -A 65 0A 35 39,-1.8 39,-1.5 4,-0.0 -5,-0.1 -0.945 8.0-138.7-116.7 131.9 3.4 3.8 6.7 27 27 A R E > -A 64 0A 102 -2,-0.4 4,-2.6 37,-0.3 5,-0.2 -0.232 27.3-107.0 -79.0 172.2 7.1 4.5 6.5 28 28 A K H > S+ 0 0 45 35,-0.5 4,-1.8 2,-0.2 5,-0.1 0.930 121.0 38.6 -65.7 -46.8 9.5 2.9 4.0 29 29 A A H > S+ 0 0 58 2,-0.2 4,-2.1 1,-0.2 5,-0.2 0.908 118.9 47.9 -70.6 -43.4 11.2 0.8 6.6 30 30 A E H > S+ 0 0 81 1,-0.2 4,-1.4 2,-0.2 -2,-0.2 0.918 116.1 43.6 -63.7 -45.0 7.9 -0.0 8.4 31 31 A L H X S+ 0 0 0 -4,-2.6 4,-2.3 2,-0.2 5,-0.2 0.839 110.3 57.6 -69.3 -33.8 6.1 -0.9 5.2 32 32 A L H X S+ 0 0 22 -4,-1.8 4,-2.5 -5,-0.2 -2,-0.2 0.940 107.6 45.2 -62.0 -49.2 9.1 -2.9 4.0 33 33 A L H X S+ 0 0 112 -4,-2.1 4,-1.1 1,-0.2 -1,-0.2 0.841 111.4 55.4 -63.9 -33.7 9.1 -5.2 7.0 34 34 A R H X S+ 0 0 87 -4,-1.4 4,-0.6 -5,-0.2 3,-0.3 0.934 113.0 39.4 -65.0 -47.8 5.3 -5.6 6.7 35 35 A L H >X S+ 0 0 6 -4,-2.3 4,-3.0 1,-0.2 3,-0.9 0.853 108.9 62.1 -70.5 -35.7 5.5 -6.7 3.1 36 36 A Q H 3< S+ 0 0 117 -4,-2.5 4,-0.4 1,-0.2 -1,-0.2 0.804 92.7 66.9 -60.0 -29.4 8.6 -8.8 3.8 37 37 A K H 3< S+ 0 0 175 -4,-1.1 -1,-0.2 -3,-0.3 -2,-0.2 0.887 114.1 28.1 -59.1 -40.5 6.5 -10.9 6.2 38 38 A D H << S- 0 0 76 -3,-0.9 -2,-0.2 -4,-0.6 -1,-0.2 0.802 140.7 -52.9 -90.1 -34.7 4.4 -12.2 3.3 39 39 A G < + 0 0 31 -4,-3.0 2,-0.4 -5,-0.1 -2,-0.2 -0.250 56.7 174.7 154.0 115.1 7.2 -11.9 0.6 40 40 A L - 0 0 30 -4,-0.4 2,-0.2 -2,-0.1 -4,-0.0 -0.985 6.9-178.0-141.6 127.8 9.5 -9.2 -0.6 41 41 A T > - 0 0 80 -2,-0.4 4,-2.4 1,-0.0 3,-0.2 -0.513 46.5 -92.2-113.1-177.4 12.3 -9.4 -3.1 42 42 A Q H > S+ 0 0 156 1,-0.2 4,-1.9 2,-0.2 5,-0.3 0.851 126.0 53.8 -64.4 -35.0 14.9 -7.0 -4.5 43 43 A A H > S+ 0 0 69 1,-0.2 4,-1.1 2,-0.2 -1,-0.2 0.816 113.0 43.0 -69.2 -31.1 12.5 -6.1 -7.4 44 44 A D H > S+ 0 0 35 -3,-0.2 4,-1.7 2,-0.2 -2,-0.2 0.813 110.5 56.4 -83.3 -33.3 9.8 -5.3 -4.9 45 45 A K H X S+ 0 0 93 -4,-2.4 4,-1.2 2,-0.2 -2,-0.2 0.979 115.4 34.4 -62.0 -59.2 12.1 -3.4 -2.5 46 46 A D H >X S+ 0 0 119 -4,-1.9 4,-1.2 1,-0.2 3,-0.5 0.920 118.1 53.5 -62.9 -45.3 13.4 -0.9 -5.1 47 47 A A H 3X S+ 0 0 47 -4,-1.1 4,-2.0 -5,-0.3 -1,-0.2 0.815 102.0 61.4 -59.8 -30.8 10.0 -0.8 -6.9 48 48 A L H 3X S+ 0 0 0 -4,-1.7 4,-3.1 1,-0.2 5,-0.2 0.897 98.2 55.7 -63.2 -41.7 8.4 0.0 -3.6 49 49 A D H S+ 0 0 72 1,-0.2 3,-1.6 2,-0.2 4,-0.3 0.808 104.3 66.1 -77.2 -31.3 -7.9 9.8 -5.0 71 71 A M G > S+ 0 0 30 1,-0.3 3,-2.0 2,-0.2 -1,-0.2 0.803 87.2 70.6 -60.0 -29.4 -5.9 6.6 -4.5 72 72 A Y G > S+ 0 0 6 -4,-0.3 3,-1.6 1,-0.3 -1,-0.3 0.804 82.6 71.7 -58.0 -29.6 -8.4 5.6 -1.8 73 73 A K G < S+ 0 0 162 -3,-1.6 -1,-0.3 1,-0.3 -2,-0.2 0.761 92.2 58.1 -58.2 -24.8 -10.9 5.1 -4.7 74 74 A D G < S+ 0 0 112 -3,-2.0 2,-0.4 -4,-0.3 -1,-0.3 -0.072 87.1 107.6 -96.8 33.0 -8.9 2.0 -5.6 75 75 A V < - 0 0 23 -3,-1.6 2,-0.2 -53,-0.0 -56,-0.0 -0.931 52.6-156.8-115.8 135.3 -9.4 0.5 -2.2 76 76 A Q - 0 0 100 -2,-0.4 3,-0.2 1,-0.1 -2,-0.0 -0.578 17.6-143.3-104.2 168.6 -11.7 -2.5 -1.4 77 77 A K S S+ 0 0 70 -2,-0.2 -1,-0.1 1,-0.1 13,-0.1 0.590 94.4 66.9-104.2 -17.3 -13.3 -3.7 1.8 78 78 A D + 0 0 126 3,-0.0 -1,-0.1 -77,-0.0 9,-0.0 -0.116 68.6 146.3 -95.7 36.4 -12.9 -7.4 1.2 79 79 A W > - 0 0 12 -3,-0.2 3,-1.2 1,-0.2 -71,-0.1 -0.631 50.5-140.7 -77.9 120.9 -9.1 -7.2 1.4 80 80 A P T 3 S+ 0 0 38 0, 0.0 -1,-0.2 0, 0.0 -72,-0.1 0.771 98.9 69.0 -50.4 -27.3 -7.7 -10.5 3.0 81 81 A G T 3 S+ 0 0 24 -74,-0.1 5,-0.1 -73,-0.1 -73,-0.1 0.928 94.6 59.8 -59.2 -47.9 -5.3 -8.2 4.9 82 82 A Y < + 0 0 13 -3,-1.2 3,-0.0 1,-0.1 -5,-0.0 -0.157 53.5 168.5 -75.0 174.2 -8.0 -6.7 7.1 83 83 A S - 0 0 101 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.318 64.5 -48.4-148.9 -65.0 -10.2 -8.6 9.5 84 84 A E S > S+ 0 0 146 3,-0.0 4,-2.4 0, 0.0 5,-0.3 0.324 127.9 44.5-147.5 -67.0 -12.3 -6.5 11.9 85 85 A G H > S+ 0 0 47 1,-0.2 4,-0.9 2,-0.2 -3,-0.1 0.819 120.0 46.0 -60.2 -31.2 -10.4 -3.8 13.8 86 86 A D H > S+ 0 0 65 2,-0.2 4,-1.7 3,-0.1 -1,-0.2 0.858 110.0 53.2 -79.3 -38.0 -8.7 -2.8 10.6 87 87 A Q H > S+ 0 0 62 2,-0.2 4,-1.4 1,-0.2 3,-0.3 0.955 110.6 45.4 -61.7 -52.6 -11.8 -2.9 8.5 88 88 A Q H X S+ 0 0 116 -4,-2.4 4,-1.3 1,-0.2 -1,-0.2 0.846 111.0 55.4 -60.2 -34.6 -13.8 -0.6 10.8 89 89 A L H X S+ 0 0 52 -4,-0.9 4,-1.0 -5,-0.3 -1,-0.2 0.852 105.4 51.5 -67.1 -35.3 -10.7 1.7 11.0 90 90 A L H X S+ 0 0 1 -4,-1.7 4,-2.7 -3,-0.3 -1,-0.2 0.792 101.1 64.6 -71.8 -28.8 -10.7 2.0 7.2 91 91 A K H X S+ 0 0 102 -4,-1.4 4,-1.7 1,-0.2 -2,-0.2 0.974 103.7 42.9 -58.1 -59.4 -14.3 3.0 7.2 92 92 A R H X S+ 0 0 146 -4,-1.3 4,-1.6 1,-0.2 -1,-0.2 0.803 115.3 53.4 -58.0 -29.6 -13.9 6.3 9.1 93 93 A V H X S+ 0 0 23 -4,-1.0 4,-2.0 2,-0.2 -1,-0.2 0.899 104.3 52.7 -72.9 -42.4 -10.8 6.9 6.9 94 94 A L H X S+ 0 0 31 -4,-2.7 4,-2.3 1,-0.2 -2,-0.2 0.835 108.6 52.5 -62.3 -33.1 -12.7 6.4 3.6 95 95 A V H < S+ 0 0 98 -4,-1.7 -1,-0.2 1,-0.2 -2,-0.2 0.925 109.1 46.9 -69.0 -46.4 -15.3 9.0 4.8 96 96 A R H < S+ 0 0 221 -4,-1.6 -2,-0.2 -5,-0.2 -1,-0.2 0.833 126.4 31.5 -64.8 -32.9 -12.7 11.7 5.6 97 97 A K H < S+ 0 0 71 -4,-2.0 2,-0.3 1,-0.1 -2,-0.2 0.939 117.3 51.0 -87.9 -66.9 -11.0 11.0 2.3 98 98 A L S < S+ 0 0 50 -4,-2.3 -1,-0.1 -5,-0.2 -28,-0.1 -0.565 117.0 8.3 -77.5 135.0 -13.7 10.0 -0.1 99 99 A S S S+ 0 0 121 -2,-0.3 -1,-0.1 -3,-0.1 -2,-0.0 0.920 87.4 135.5 60.3 100.0 -16.8 12.3 -0.2 100 100 A G - 0 0 53 1,-0.5 -3,-0.1 2,-0.1 -4,-0.1 -0.563 48.4 -16.8-146.3-149.7 -16.1 15.4 1.7 101 101 A P S S- 0 0 106 0, 0.0 -1,-0.5 0, 0.0 3,-0.3 0.215 74.7 -90.6 -52.0-177.2 -16.5 19.3 1.7 102 102 A S S S- 0 0 133 1,-0.3 2,-0.4 0, 0.0 -2,-0.1 0.996 107.8 -0.4 -63.3 -66.9 -17.1 21.2 -1.5 103 103 A S 0 0 125 0, 0.0 -1,-0.3 0, 0.0 0, 0.0 -0.899 360.0 360.0-132.7 104.3 -13.5 21.9 -2.6 104 104 A G 0 0 121 -2,-0.4 -4,-0.1 -3,-0.3 0, 0.0 -0.865 360.0 360.0 152.1 360.0 -10.7 20.6 -0.4