==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-APR-06 2DOG . COMPND 2 MOLECULE: PROBABLE 16S RRNA-PROCESSING PROTEIN RIMM; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; . AUTHOR S.SUZUKI,E.MATSUMOTO,A.TATSUGUCHI,M.KAWAZOE,T.KAMINISHI,C.TA . 85 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5670.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 72.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 32 37.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 14 16.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 7.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 173 0, 0.0 2,-2.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 103.0 -16.1 2.9 7.5 2 2 A R + 0 0 205 75,-0.0 76,-0.9 2,-0.0 77,-0.3 -0.336 360.0 154.9 -59.1 83.2 -16.2 -0.4 5.6 3 3 A L E -A 77 0A 37 -2,-2.0 2,-0.3 74,-0.2 74,-0.2 -0.848 23.4-170.9-116.4 152.7 -12.4 -0.9 5.6 4 4 A V E -A 76 0A 72 72,-1.6 72,-2.6 -2,-0.3 2,-0.8 -0.996 28.8-113.4-143.4 147.1 -10.4 -4.1 5.4 5 5 A E E +A 75 0A 103 -2,-0.3 70,-0.2 70,-0.2 3,-0.1 -0.705 40.3 159.9 -83.6 109.8 -6.7 -5.0 5.8 6 6 A I E - 0 0 23 68,-0.9 18,-1.8 -2,-0.8 2,-0.3 0.789 64.7 -13.2 -96.9 -36.6 -5.3 -6.2 2.5 7 7 A G E -AB 74 23A 4 67,-0.9 67,-2.8 16,-0.3 2,-0.3 -0.925 56.8-132.6-155.1 178.3 -1.6 -5.7 3.1 8 8 A R E -AB 73 22A 109 14,-1.4 14,-2.2 65,-0.3 2,-0.5 -0.999 28.3-107.8-144.1 144.4 1.0 -4.2 5.4 9 9 A F E + B 0 21A 2 63,-2.1 62,-1.1 -2,-0.3 12,-0.2 -0.578 38.4 173.7 -74.0 120.4 4.2 -2.1 4.9 10 10 A G E - 0 0 20 10,-3.2 -1,-0.2 -2,-0.5 61,-0.1 0.877 54.7 -8.0 -89.5 -87.4 7.3 -4.2 5.6 11 11 A A E S- 0 0 28 59,-0.1 9,-2.4 9,-0.1 2,-0.4 -0.851 76.0 -96.8-117.5 153.1 10.6 -2.5 4.8 12 12 A P E - B 0 19A 24 0, 0.0 7,-0.3 0, 0.0 6,-0.1 -0.515 42.1-132.1 -69.8 121.3 11.4 0.8 3.1 13 13 A Y - 0 0 66 5,-1.8 4,-0.2 -2,-0.4 54,-0.1 0.040 48.8 -48.9 -62.7 178.2 12.2 0.3 -0.6 14 14 A A S >> S- 0 0 44 1,-0.2 3,-2.4 2,-0.1 4,-0.9 0.134 71.5 -86.4 -42.9 166.1 15.2 1.9 -2.3 15 15 A L T 34 S+ 0 0 123 1,-0.3 48,-0.2 2,-0.2 -1,-0.2 0.748 115.0 93.5 -50.8 -23.5 15.9 5.6 -1.8 16 16 A K T 34 S- 0 0 162 1,-0.2 -1,-0.3 46,-0.1 -2,-0.1 0.740 111.0-107.8 -43.0 -24.2 13.5 6.0 -4.7 17 17 A G T <4 + 0 0 0 -3,-2.4 40,-0.3 1,-0.3 45,-0.2 0.572 69.9 147.5 103.3 13.4 10.9 6.4 -2.0 18 18 A G < - 0 0 0 -4,-0.9 -5,-1.8 38,-0.1 2,-0.4 -0.395 35.0-147.9 -80.7 159.5 9.2 3.1 -2.5 19 19 A L E -BC 12 55A 0 36,-1.8 36,-2.0 -7,-0.3 2,-0.8 -0.986 19.6-120.5-133.5 124.6 7.6 1.0 0.3 20 20 A R E - C 0 54A 91 -9,-2.4 -10,-3.2 -2,-0.4 2,-0.7 -0.463 34.8-171.5 -64.2 103.5 7.4 -2.8 0.4 21 21 A F E -B 9 0A 2 32,-1.1 2,-0.9 -2,-0.8 -12,-0.2 -0.884 8.4-166.4-104.9 112.7 3.6 -3.4 0.5 22 22 A R E +B 8 0A 184 -14,-2.2 -14,-1.4 -2,-0.7 2,-0.3 -0.808 35.5 127.3-101.0 97.0 2.7 -7.1 1.2 23 23 A G E -B 7 0A 18 -2,-0.9 -16,-0.3 -16,-0.3 -17,-0.1 -0.879 61.3 -60.9-142.0 173.7 -1.0 -7.5 0.4 24 24 A E > - 0 0 122 -18,-1.8 3,-1.4 -2,-0.3 -1,-0.2 -0.034 49.0-113.2 -52.3 158.4 -3.5 -9.5 -1.5 25 25 A P G > S+ 0 0 85 0, 0.0 3,-1.7 0, 0.0 -1,-0.1 0.651 108.5 80.5 -69.8 -15.3 -3.2 -9.6 -5.3 26 26 A V G > S+ 0 0 44 1,-0.3 3,-1.7 2,-0.2 4,-0.2 0.633 72.1 80.6 -66.7 -12.7 -6.6 -7.7 -5.5 27 27 A V G X S+ 0 0 1 -3,-1.4 3,-1.6 1,-0.3 -1,-0.3 0.736 73.1 75.6 -65.8 -22.1 -4.5 -4.6 -4.8 28 28 A L G < S+ 0 0 96 -3,-1.7 -1,-0.3 1,-0.3 -2,-0.2 0.549 97.2 48.6 -67.1 -5.1 -3.6 -4.5 -8.5 29 29 A H G < S+ 0 0 143 -3,-1.7 -1,-0.3 -4,-0.1 -2,-0.2 0.420 96.2 92.7-111.7 -4.5 -7.1 -3.2 -9.0 30 30 A L < - 0 0 23 -3,-1.6 3,-0.1 -4,-0.2 46,-0.0 -0.279 51.0-167.3 -84.1 173.5 -7.0 -0.5 -6.4 31 31 A E + 0 0 138 1,-0.4 12,-1.7 -2,-0.1 2,-0.2 0.601 68.0 28.2-128.5 -42.8 -6.1 3.1 -6.8 32 32 A R E -D 42 0A 151 10,-0.2 -1,-0.4 45,-0.1 2,-0.3 -0.695 62.9-157.7-119.6 172.8 -5.6 4.6 -3.3 33 33 A V E -D 41 0A 2 8,-3.2 8,-1.9 -2,-0.2 2,-0.4 -0.908 14.2-127.1-144.7 171.1 -4.6 3.3 0.1 34 34 A Y E -DE 40 75A 46 41,-0.9 41,-1.6 -2,-0.3 2,-1.2 -0.969 13.1-144.8-130.2 118.1 -4.9 4.0 3.8 35 35 A V E > - E 0 74A 0 4,-1.7 3,-1.7 -2,-0.4 2,-0.9 -0.667 19.5-142.0 -83.1 95.7 -1.8 4.2 6.1 36 36 A E E 3 S+ E 0 73A 70 37,-2.4 37,-0.6 -2,-1.2 -1,-0.1 -0.409 88.2 30.5 -60.6 99.8 -3.1 2.8 9.4 37 37 A G T 3 S+ 0 0 55 -2,-0.9 -1,-0.2 35,-0.1 -2,-0.0 -0.075 129.2 23.0 143.5 -38.4 -1.4 5.1 11.9 38 38 A H S < S- 0 0 130 -3,-1.7 2,-0.3 1,-0.3 -2,-0.1 0.646 109.5 -57.3-117.6 -78.2 -0.9 8.4 10.2 39 39 A G - 0 0 31 -4,-0.2 -4,-1.7 -3,-0.0 -1,-0.3 -0.943 59.4 -61.2-161.2-179.6 -3.3 9.2 7.3 40 40 A W E -D 34 0A 84 -2,-0.3 2,-0.3 -6,-0.2 -6,-0.3 -0.502 49.5-169.9 -76.1 141.8 -4.7 8.1 4.0 41 41 A R E -D 33 0A 104 -8,-1.9 -8,-3.2 -2,-0.2 2,-0.3 -0.846 13.9-129.3-129.0 165.5 -2.3 7.8 1.0 42 42 A A E -D 32 0A 42 -2,-0.3 16,-2.5 -10,-0.3 2,-0.4 -0.841 19.9-119.5-116.5 153.9 -2.6 7.3 -2.7 43 43 A I E +F 57 0A 32 -12,-1.7 14,-0.2 -2,-0.3 3,-0.1 -0.766 31.7 165.3 -94.7 134.5 -0.8 4.9 -5.1 44 44 A E E S- 0 0 129 12,-2.2 2,-0.3 -2,-0.4 -1,-0.2 0.735 70.4 -5.4-112.1 -43.3 1.4 6.1 -7.9 45 45 A D E +F 56 0A 100 11,-0.8 11,-1.4 2,-0.0 2,-0.3 -0.907 65.7 163.2-159.9 127.5 3.3 3.1 -9.0 46 46 A L E +F 55 0A 34 -2,-0.3 2,-0.3 9,-0.2 9,-0.2 -0.959 3.9 171.1-143.4 160.1 3.5 -0.5 -7.7 47 47 A Y E -F 54 0A 91 7,-0.8 7,-1.9 -2,-0.3 2,-0.9 -0.927 39.3-105.1-169.6 143.9 4.7 -3.9 -8.8 48 48 A R E -F 53 0A 156 -2,-0.3 2,-0.9 5,-0.2 5,-0.3 -0.642 33.6-157.9 -78.2 106.6 5.3 -7.4 -7.4 49 49 A V E > -F 52 0A 68 3,-0.9 3,-1.3 -2,-0.9 2,-1.0 -0.755 57.0 -59.5 -89.9 103.8 9.0 -7.9 -7.1 50 50 A G T 3 S- 0 0 68 -2,-0.9 -2,-0.1 1,-0.3 3,-0.0 -0.472 125.9 -9.1 65.6-100.6 9.8 -11.6 -7.1 51 51 A E T 3 S+ 0 0 186 -2,-1.0 2,-0.3 2,-0.0 -1,-0.3 0.020 132.1 53.8-118.1 24.6 7.9 -12.8 -4.1 52 52 A E E < S- F 0 49A 77 -3,-1.3 -3,-0.9 -30,-0.0 2,-0.4 -0.879 72.1-121.4-146.7 177.0 6.9 -9.4 -2.7 53 53 A L E - F 0 48A 11 -5,-0.3 -32,-1.1 -2,-0.3 2,-0.5 -0.981 10.3-160.5-130.6 141.0 5.2 -6.2 -3.6 54 54 A V E -CF 20 47A 3 -7,-1.9 -7,-0.8 -2,-0.4 2,-0.4 -0.902 11.1-169.6-124.8 103.3 6.5 -2.6 -3.5 55 55 A V E -CF 19 46A 0 -36,-2.0 -36,-1.8 -2,-0.5 2,-0.8 -0.741 13.0-146.1 -94.0 137.6 3.9 0.2 -3.5 56 56 A H E - F 0 45A 28 -11,-1.4 -12,-2.2 -2,-0.4 -11,-0.8 -0.859 15.4-151.5-106.6 101.6 4.9 3.8 -4.0 57 57 A L E - F 0 43A 1 -2,-0.8 3,-0.4 -40,-0.3 -14,-0.2 -0.375 30.4 -94.8 -70.0 147.8 2.7 6.2 -2.0 58 58 A A S S+ 0 0 26 -16,-2.5 2,-0.3 1,-0.2 -16,-0.2 -0.413 107.9 14.4 -65.1 132.2 2.1 9.7 -3.3 59 59 A G S S+ 0 0 46 1,-0.2 2,-1.0 -2,-0.1 -1,-0.2 -0.286 91.6 114.3 99.7 -48.4 4.5 12.2 -1.8 60 60 A V + 0 0 7 -3,-0.4 -1,-0.2 -2,-0.3 3,-0.0 -0.428 26.3 145.9 -62.1 98.8 6.9 9.7 -0.3 61 61 A T + 0 0 96 -2,-1.0 2,-0.3 -3,-0.1 -1,-0.2 -0.034 54.9 54.6-126.1 29.1 10.0 10.4 -2.4 62 62 A D S > S- 0 0 51 -45,-0.2 4,-2.5 1,-0.1 5,-0.2 -0.981 82.8-114.4-160.8 149.0 12.7 9.7 0.2 63 63 A R H > S+ 0 0 111 -2,-0.3 4,-3.3 1,-0.2 5,-0.2 0.851 115.5 58.3 -52.5 -36.8 13.8 7.0 2.6 64 64 A T H > S+ 0 0 112 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.978 108.2 41.4 -58.2 -60.8 12.9 9.3 5.4 65 65 A L H > S+ 0 0 73 1,-0.2 4,-0.9 2,-0.2 -2,-0.2 0.916 117.8 49.3 -53.9 -47.1 9.2 9.7 4.5 66 66 A A H >< S+ 0 0 0 -4,-2.5 3,-2.1 1,-0.2 -2,-0.2 0.961 106.5 53.8 -57.9 -55.7 9.0 6.0 3.6 67 67 A E H >< S+ 0 0 101 -4,-3.3 3,-1.9 1,-0.3 -1,-0.2 0.849 102.4 60.7 -48.1 -38.1 10.5 4.9 6.9 68 68 A A H 3< S+ 0 0 51 -4,-1.9 -1,-0.3 1,-0.3 -2,-0.2 0.813 108.2 43.3 -60.6 -30.7 7.9 7.0 8.6 69 69 A L T << S+ 0 0 9 -3,-2.1 2,-0.4 -4,-0.9 -1,-0.3 0.060 92.8 115.1-102.7 23.2 5.2 4.8 7.0 70 70 A V S < S+ 0 0 45 -3,-1.9 -60,-0.1 1,-0.2 -59,-0.1 -0.792 72.1 20.4 -97.9 135.3 7.1 1.6 7.7 71 71 A G S S+ 0 0 32 -62,-1.1 -1,-0.2 -2,-0.4 -2,-0.1 -0.047 96.1 110.7 102.6 -31.8 5.6 -1.0 10.0 72 72 A L - 0 0 44 1,-0.1 -63,-2.1 -64,-0.1 -1,-0.4 -0.245 66.9-116.3 -72.9 164.6 2.1 0.2 9.7 73 73 A R E -AE 8 36A 119 -37,-0.6 -37,-2.4 -65,-0.2 2,-0.4 -0.686 19.1-127.2-103.0 157.3 -0.7 -1.7 8.0 74 74 A V E -AE 7 35A 0 -67,-2.8 -67,-0.9 -2,-0.2 -68,-0.9 -0.842 19.4-158.1-106.7 141.0 -2.7 -0.7 4.9 75 75 A Y E -AE 5 34A 52 -41,-1.6 -41,-0.9 -2,-0.4 2,-0.3 -0.831 2.7-150.2-116.6 155.2 -6.5 -0.7 4.6 76 76 A A E -A 4 0A 3 -72,-2.6 -72,-1.6 -2,-0.3 2,-0.5 -0.846 8.3-138.1-122.6 159.4 -8.8 -0.8 1.6 77 77 A E E >> -A 3 0A 71 -2,-0.3 3,-3.0 -74,-0.2 4,-1.0 -0.937 5.4-151.6-122.7 110.0 -12.3 0.5 0.9 78 78 A V T 34 S+ 0 0 66 -76,-0.9 -1,-0.1 -2,-0.5 -75,-0.1 0.814 88.9 85.2 -44.5 -34.5 -14.8 -1.7 -0.9 79 79 A A T 34 S+ 0 0 85 -77,-0.3 -1,-0.3 1,-0.3 -3,-0.0 0.786 101.8 33.2 -39.2 -32.8 -16.3 1.5 -2.2 80 80 A D T <4 S+ 0 0 71 -3,-3.0 -1,-0.3 2,-0.1 -2,-0.2 0.821 95.8 107.4 -93.7 -39.4 -13.6 1.2 -4.9 81 81 A L S < S- 0 0 52 -4,-1.0 -51,-0.0 1,-0.1 -55,-0.0 0.091 80.7 -93.4 -38.0 151.2 -13.5 -2.6 -5.1 82 82 A P - 0 0 76 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.232 43.7 -98.1 -69.7 159.9 -15.1 -4.0 -8.3 83 83 A P - 0 0 83 0, 0.0 -3,-0.0 0, 0.0 0, 0.0 -0.035 53.1 -76.1 -69.7 177.6 -18.7 -5.2 -8.5 84 84 A L 0 0 182 1,-0.3 0, 0.0 0, 0.0 0, 0.0 0.734 360.0 360.0 -48.2 -22.2 -19.9 -8.8 -8.2 85 85 A E 0 0 165 0, 0.0 -1,-0.3 0, 0.0 0, 0.0 0.477 360.0 360.0-119.2 360.0 -18.6 -9.1 -11.8