==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 23-DEC-99 1DP7 . COMPND 2 MOLECULE: DNA (5'-D(*CP*GP*(BRU)P*TP*AP*CP*CP*AP*(BRU) . SOURCE 2 SYNTHETIC: YES; . AUTHOR K.S.GAJIWALA,H.CHEN,F.CORNILLE,B.P.ROQUES,W.REITH,B.MACH, . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5427.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 65.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 14 18.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 7.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 26 34.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 P T > 0 0 70 0, 0.0 4,-2.3 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 2.8 36.4 21.8 33.0 2 2 P V H > + 0 0 70 2,-0.2 4,-2.6 1,-0.2 5,-0.2 0.958 360.0 42.8 -59.2 -49.7 35.7 25.4 34.1 3 3 P Q H > S+ 0 0 116 1,-0.2 4,-2.4 2,-0.2 5,-0.2 0.911 110.9 54.9 -68.0 -34.7 32.0 25.2 33.5 4 4 P W H > S+ 0 0 29 2,-0.2 4,-1.5 1,-0.2 -1,-0.2 0.938 109.9 48.7 -61.2 -41.0 31.8 21.7 35.2 5 5 P L H >X S+ 0 0 0 -4,-2.3 4,-2.7 1,-0.2 3,-0.6 0.966 111.8 47.7 -62.0 -48.4 33.5 23.3 38.2 6 6 P L H 3< S+ 0 0 58 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.840 111.4 52.0 -62.6 -32.0 31.1 26.2 38.3 7 7 P D H 3< S+ 0 0 85 -4,-2.4 69,-0.3 -5,-0.2 -1,-0.2 0.754 120.7 32.1 -74.9 -22.8 28.1 23.9 37.9 8 8 P N H << S+ 0 0 33 -4,-1.5 67,-2.9 -3,-0.6 68,-0.4 0.690 121.4 31.2-110.8 -18.2 29.1 21.7 40.8 9 9 P Y E < -A 74 0A 13 -4,-2.7 2,-0.3 65,-0.3 65,-0.2 -0.925 54.2-174.5-139.7 161.8 30.9 24.1 43.3 10 10 P E E -A 73 0A 53 63,-2.2 63,-2.1 -2,-0.3 41,-0.1 -0.983 35.2 -98.0-153.9 153.6 30.8 27.7 44.5 11 11 P T E +A 72 0A 76 -2,-0.3 2,-0.3 61,-0.2 61,-0.3 -0.382 52.5 165.7 -68.7 148.6 32.7 30.0 46.8 12 12 P A E - 0 0 18 59,-1.5 2,-0.4 3,-0.2 3,-0.3 -0.968 33.7 -94.5-160.4 167.2 31.1 30.2 50.2 13 13 P E E S- 0 0 188 -2,-0.3 3,-0.1 1,-0.2 58,-0.0 -0.721 89.9 -4.2-101.0 133.2 31.7 31.4 53.7 14 14 P G E S+ 0 0 60 -2,-0.4 2,-0.3 1,-0.2 -1,-0.2 0.579 103.8 98.5 73.1 14.9 32.9 29.4 56.7 15 15 P V E - 0 0 60 -3,-0.3 56,-3.1 2,-0.0 57,-0.9 -0.910 47.3-168.3-133.4 154.4 32.9 26.0 55.0 16 16 P S E -A 70 0A 36 -2,-0.3 54,-0.2 54,-0.3 -3,-0.0 -0.929 11.3-146.3-138.7 167.2 35.6 23.8 53.4 17 17 P L E -A 69 0A 23 52,-2.0 52,-2.6 -2,-0.3 2,-0.1 -0.992 31.5-108.8-133.5 136.9 36.0 20.6 51.3 18 18 P P E > -A 68 0A 42 0, 0.0 4,-1.5 0, 0.0 50,-0.3 -0.472 26.2-132.4 -63.5 141.8 38.8 18.1 51.5 19 19 P R H > S+ 0 0 54 48,-2.5 4,-2.7 1,-0.2 5,-0.2 0.891 100.6 58.4 -63.4 -36.6 41.0 18.4 48.4 20 20 P S H > S+ 0 0 62 47,-0.5 4,-3.2 1,-0.2 -1,-0.2 0.902 104.5 46.9 -61.6 -43.7 40.9 14.7 47.8 21 21 P T H > S+ 0 0 76 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.905 113.1 50.7 -70.7 -32.0 37.2 14.2 47.4 22 22 P L H X S+ 0 0 0 -4,-1.5 4,-2.3 2,-0.2 -2,-0.2 0.958 114.0 43.3 -67.1 -45.5 37.0 17.2 45.1 23 23 P Y H X S+ 0 0 45 -4,-2.7 4,-2.3 1,-0.2 -2,-0.2 0.905 112.0 55.4 -66.3 -38.6 39.8 15.9 42.9 24 24 P N H X S+ 0 0 88 -4,-3.2 4,-1.6 -5,-0.2 -1,-0.2 0.881 106.9 49.3 -59.8 -38.6 38.2 12.4 43.1 25 25 P H H X S+ 0 0 60 -4,-2.1 4,-2.4 1,-0.2 -1,-0.2 0.918 109.5 52.8 -65.4 -44.7 35.0 13.9 41.8 26 26 P Y H X S+ 0 0 8 -4,-2.3 4,-2.7 1,-0.2 -2,-0.2 0.899 105.5 54.4 -56.7 -39.2 36.9 15.6 39.0 27 27 P L H X S+ 0 0 52 -4,-2.3 4,-2.5 2,-0.2 -1,-0.2 0.882 108.2 48.8 -66.2 -34.8 38.5 12.2 38.0 28 28 P L H X S+ 0 0 87 -4,-1.6 4,-3.3 2,-0.2 5,-0.2 0.933 111.8 49.3 -67.6 -43.1 35.0 10.6 37.7 29 29 P H H X S+ 0 0 34 -4,-2.4 4,-2.3 2,-0.2 -2,-0.2 0.924 111.9 49.0 -58.6 -44.3 33.9 13.5 35.5 30 30 P S H <>S+ 0 0 1 -4,-2.7 5,-3.0 2,-0.2 4,-0.3 0.947 114.1 44.6 -62.4 -48.6 36.9 13.2 33.4 31 31 P Q H ><5S+ 0 0 137 -4,-2.5 3,-1.2 1,-0.2 -2,-0.2 0.925 114.4 49.4 -62.2 -46.3 36.5 9.4 33.0 32 32 P E H 3<5S+ 0 0 127 -4,-3.3 -1,-0.2 1,-0.3 -2,-0.2 0.843 115.6 42.6 -63.8 -33.2 32.8 9.7 32.3 33 33 P Q T 3<5S- 0 0 108 -4,-2.3 -1,-0.3 -5,-0.2 -2,-0.2 0.292 112.3-116.7 -95.6 10.3 33.3 12.5 29.7 34 34 P K T < 5 + 0 0 175 -3,-1.2 2,-0.4 -4,-0.3 -3,-0.2 0.908 67.2 141.3 55.6 46.3 36.3 10.7 28.1 35 35 P L < - 0 0 95 -5,-3.0 -1,-0.2 -6,-0.1 -2,-0.1 -0.929 58.1-116.5-115.8 140.1 38.7 13.6 29.0 36 36 P E - 0 0 152 -2,-0.4 2,-0.1 -3,-0.1 -5,-0.0 -0.671 37.0-128.7 -80.4 119.8 42.3 12.9 30.1 37 37 P P - 0 0 65 0, 0.0 2,-0.1 0, 0.0 -10,-0.1 -0.375 11.4-132.6 -68.2 145.5 42.5 14.1 33.7 38 38 P V - 0 0 59 1,-0.2 2,-0.0 -2,-0.1 0, 0.0 -0.450 35.8 -94.8 -86.9 167.2 45.3 16.4 34.8 39 39 P N > - 0 0 95 -2,-0.1 4,-2.7 1,-0.1 5,-0.2 -0.186 39.2 -94.9 -80.3 175.6 47.2 15.6 38.0 40 40 P A H > S+ 0 0 57 1,-0.2 4,-1.8 2,-0.2 5,-0.1 0.877 123.8 50.4 -61.8 -35.5 46.4 17.0 41.5 41 41 P A H > S+ 0 0 69 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.938 112.8 45.9 -67.8 -47.2 48.9 19.8 41.3 42 42 P S H > S+ 0 0 52 1,-0.2 4,-2.4 2,-0.2 -2,-0.2 0.885 110.4 55.1 -62.3 -36.3 47.6 20.9 37.9 43 43 P F H X S+ 0 0 2 -4,-2.7 4,-2.9 1,-0.2 -1,-0.2 0.880 103.2 55.2 -66.5 -35.7 44.0 20.6 39.2 44 44 P G H X S+ 0 0 9 -4,-1.8 4,-1.8 2,-0.2 -1,-0.2 0.894 107.6 50.0 -61.8 -37.8 45.0 23.0 42.1 45 45 P K H X S+ 0 0 161 -4,-1.7 4,-0.9 2,-0.2 -2,-0.2 0.944 112.2 48.4 -65.2 -41.9 46.1 25.5 39.4 46 46 P L H >X S+ 0 0 38 -4,-2.4 3,-1.1 1,-0.2 4,-0.8 0.952 110.3 48.6 -63.7 -47.0 42.8 25.1 37.6 47 47 P I H >X S+ 0 0 0 -4,-2.9 4,-2.9 1,-0.3 3,-0.7 0.859 109.5 51.7 -68.8 -30.9 40.6 25.5 40.6 48 48 P R H 3< S+ 0 0 105 -4,-1.8 -1,-0.3 1,-0.2 -2,-0.2 0.675 105.0 57.3 -77.1 -13.6 42.3 28.6 41.8 49 49 P S H << S+ 0 0 78 -3,-1.1 -1,-0.2 -4,-0.9 -2,-0.2 0.622 116.8 36.1 -85.7 -12.9 41.9 30.1 38.3 50 50 P V H << S+ 0 0 19 -4,-0.8 2,-0.7 -3,-0.7 -2,-0.2 0.804 117.6 45.9-103.8 -46.5 38.1 29.6 38.7 51 51 P F S >< S- 0 0 11 -4,-2.9 3,-0.7 -5,-0.2 -1,-0.3 -0.915 79.0-147.6-108.0 111.4 37.4 30.2 42.4 52 52 P M T 3 S+ 0 0 136 -2,-0.7 -3,-0.1 1,-0.2 -4,-0.0 -0.497 72.5 17.9 -77.3 140.4 39.0 33.4 43.7 53 53 P G T 3 S+ 0 0 67 1,-0.2 -1,-0.2 -2,-0.2 2,-0.1 0.622 72.8 164.0 82.2 12.0 40.2 33.6 47.3 54 54 P L < - 0 0 16 -3,-0.7 2,-0.2 -6,-0.1 -1,-0.2 -0.406 22.8-150.8 -66.7 142.3 40.4 30.0 48.3 55 55 P R E -B 70 0A 170 15,-2.5 15,-3.0 -2,-0.1 2,-0.5 -0.700 9.8-120.7-111.3 161.0 42.4 29.4 51.5 56 56 P T E +B 69 0A 70 -2,-0.2 2,-0.3 13,-0.2 13,-0.2 -0.894 34.0 165.1-105.1 130.4 44.3 26.4 52.6 57 57 P R E -B 68 0A 125 11,-1.7 11,-2.9 -2,-0.5 2,-0.5 -0.940 27.0-146.8-134.5 160.3 43.6 24.5 55.8 58 58 P R E -B 67 0A 152 -2,-0.3 2,-0.3 9,-0.2 9,-0.2 -0.948 26.0-172.5-129.9 107.4 44.6 21.1 57.1 59 59 P L E +B 66 0A 51 7,-2.1 7,-2.3 -2,-0.5 2,-0.2 -0.796 31.0 73.1-107.7 144.2 41.9 19.6 59.2 60 60 P G S S- 0 0 56 -2,-0.3 5,-0.2 5,-0.2 3,-0.1 -0.639 77.3 -61.6 138.9 166.8 41.9 16.4 61.3 61 61 P T S > S- 0 0 101 3,-0.2 3,-2.8 -2,-0.2 4,-0.2 -0.228 79.2 -60.9 -76.4 165.6 43.3 15.0 64.5 62 62 P R T 3 S+ 0 0 244 1,-0.3 -1,-0.2 2,-0.2 0, 0.0 -0.205 127.8 13.8 -50.7 134.8 47.0 14.8 65.1 63 63 P G T 3 S+ 0 0 82 -3,-0.1 -1,-0.3 1,-0.0 -2,-0.1 0.290 121.8 70.6 82.1 -5.4 48.8 12.6 62.6 64 64 P N < + 0 0 103 -3,-2.8 -3,-0.2 2,-0.0 -2,-0.2 0.144 60.2 141.5-128.2 15.6 45.7 12.7 60.4 65 65 P S - 0 0 51 -5,-0.2 2,-0.4 -4,-0.2 -5,-0.2 -0.403 28.0-171.0 -61.8 138.8 45.5 16.2 59.1 66 66 P K E - B 0 59A 130 -7,-2.3 -7,-2.1 -2,-0.1 2,-0.1 -0.975 26.6-101.5-134.9 141.4 44.4 16.5 55.5 67 67 P Y E - B 0 58A 105 -2,-0.4 -48,-2.5 -9,-0.2 -47,-0.5 -0.383 38.0-174.9 -66.0 139.9 44.3 19.4 53.1 68 68 P H E -AB 18 57A 25 -11,-2.9 -11,-1.7 -50,-0.3 2,-0.7 -0.941 29.9-127.6-129.1 150.4 41.1 21.3 52.5 69 69 P Y E -AB 17 56A 13 -52,-2.6 -52,-2.0 -2,-0.3 2,-0.5 -0.909 34.7-150.4 -93.4 117.1 40.1 24.2 50.2 70 70 P Y E S+AB 16 55A 81 -15,-3.0 -15,-2.5 -2,-0.7 -54,-0.3 -0.853 74.5 36.8 -96.6 129.0 38.5 26.6 52.7 71 71 P G E S+ 0 0 15 -56,-3.1 -59,-1.5 -2,-0.5 2,-0.3 0.663 95.7 98.9 103.5 26.4 35.8 28.8 51.2 72 72 P L E +A 11 0A 0 -57,-0.9 -1,-0.4 -3,-0.5 2,-0.3 -0.982 40.8 174.0-142.9 148.0 34.2 26.4 48.9 73 73 P R E -A 10 0A 123 -63,-2.1 -63,-2.2 -2,-0.3 2,-0.2 -0.968 43.5 -84.5-149.3 164.7 31.1 24.1 48.9 74 74 P I E -A 9 0A 91 -2,-0.3 -65,-0.3 -65,-0.2 -66,-0.1 -0.484 34.3-166.8 -66.0 136.2 29.1 21.8 46.7 75 75 P K 0 0 103 -67,-2.9 -66,-0.2 -2,-0.2 -1,-0.2 0.903 360.0 360.0 -87.4 -59.4 26.6 23.9 44.7 76 76 P A 0 0 106 -68,-0.4 -68,-0.2 -69,-0.3 -2,-0.1 0.611 360.0 360.0-121.0 360.0 24.6 21.1 43.5