==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 03-JAN-00 1DQB . COMPND 2 MOLECULE: THROMBOMODULIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.J.WOOD,B.A.SAMPOLI-BENITEZ,E.A.KOMIVES . 83 1 6 6 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6490.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 16 19.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 7.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A H 0 0 215 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -61.0 5.5 1.9 24.3 2 2 A M - 0 0 159 1,-0.1 0, 0.0 2,-0.0 0, 0.0 0.279 360.0-104.6 73.5-166.6 3.6 -1.3 24.3 3 3 A E - 0 0 94 2,-0.1 -1,-0.1 1,-0.0 7,-0.1 -0.859 24.1-161.2-177.7 126.4 0.3 -2.4 23.0 4 4 A P - 0 0 101 0, 0.0 6,-0.1 0, 0.0 5,-0.1 0.044 64.1-123.4 -72.4 17.1 -3.3 -3.3 23.8 5 5 A V - 0 0 48 4,-0.2 4,-0.3 5,-0.0 3,-0.2 0.860 29.9-130.4 -3.5 114.3 -2.5 -4.6 20.4 6 6 A D - 0 0 77 2,-0.6 3,-0.1 1,-0.1 -3,-0.0 0.553 46.2 -78.8 -40.7 -92.9 -5.4 -2.7 19.5 7 7 A P S S- 0 0 67 0, 0.0 -1,-0.1 0, 0.0 13,-0.0 0.271 127.2 -3.8 -51.0 -65.7 -7.1 -4.9 17.8 8 8 A a S S+ 0 0 0 -3,-0.2 -2,-0.6 2,-0.1 8,-0.0 0.855 82.8 117.7 -92.6 -99.2 -4.3 -3.6 15.6 9 9 A F S S+ 0 0 111 -4,-0.3 -4,-0.2 1,-0.2 -1,-0.1 0.783 108.5 22.6 21.6 47.0 -2.0 -0.8 16.6 10 10 A R S S+ 0 0 105 -5,-0.1 -1,-0.2 -6,-0.1 -2,-0.1 0.271 85.0 133.7 175.9 -11.8 0.6 -3.5 16.3 11 11 A A S S- 0 0 30 1,-0.3 16,-0.1 0, 0.0 5,-0.1 0.619 81.5 -97.5 -53.0 -81.1 -0.9 -5.8 14.1 12 12 A N + 0 0 96 3,-0.1 -1,-0.3 4,-0.1 4,-0.1 0.006 63.2 162.0-158.1 54.2 1.8 -6.3 12.1 13 13 A b - 0 0 11 1,-0.1 4,-0.1 13,-0.1 14,-0.1 -0.247 37.6-143.6 -21.9 109.5 0.8 -4.0 9.3 14 14 A E S S+ 0 0 104 2,-0.2 -1,-0.1 14,-0.1 15,-0.1 1.000 103.0 8.7 -48.0 -77.0 4.0 -3.4 7.4 15 15 A Y S S- 0 0 129 13,-0.4 14,-0.2 1,-0.2 2,-0.1 0.514 124.4 -75.2 -57.8-131.1 2.5 -0.0 7.1 16 16 A Q - 0 0 113 12,-0.2 12,-1.7 1,-0.1 2,-0.2 -0.199 35.6 -93.6-130.1-158.2 -0.5 0.2 9.3 17 17 A a - 0 0 12 10,-0.3 -1,-0.1 -4,-0.1 10,-0.0 -0.619 6.3-149.0-123.4 176.5 -4.1 -0.6 10.0 18 18 A Q - 0 0 95 -2,-0.2 3,-0.1 10,-0.1 -1,-0.1 0.789 55.4-121.0 -80.9 -32.0 -7.5 0.9 9.7 19 19 A P - 0 0 55 0, 0.0 2,-1.0 0, 0.0 -2,-0.1 0.861 56.2 -47.3 -47.6 135.5 -8.0 -0.6 12.3 20 20 A L >> + 0 0 62 1,-0.1 4,-2.3 2,-0.0 3,-2.2 -0.752 62.6 154.6 119.4 -77.4 -10.7 -2.9 11.3 21 21 A N T 34 S- 0 0 112 -2,-1.0 -1,-0.1 1,-0.3 5,-0.0 0.540 84.7 -33.6 -47.8 112.0 -13.6 -1.7 9.6 22 22 A Q T 34 S+ 0 0 192 1,-0.3 -1,-0.3 4,-0.0 -2,-0.0 0.793 144.4 59.3 31.8 40.5 -15.0 -4.6 7.6 23 23 A T T <4 S- 0 0 82 -3,-2.2 -2,-0.3 3,-0.0 -1,-0.3 0.045 106.1-137.7 -83.6 -38.0 -12.0 -6.0 7.1 24 24 A S S < S- 0 0 73 -4,-2.3 -3,-0.1 0, 0.0 0, 0.0 0.617 74.6 -20.3 41.2 137.4 -11.8 -6.1 10.7 25 25 A Y S S+ 0 0 97 -2,-0.0 -4,-0.1 1,-0.0 -8,-0.1 0.696 80.3 159.2 -66.7 162.9 -8.5 -5.1 10.7 26 26 A L - 0 0 45 15,-0.0 2,-0.1 -5,-0.0 -13,-0.1 0.539 45.0 -86.2-115.6-130.7 -6.4 -5.4 7.8 27 27 A b - 0 0 20 14,-0.1 -10,-0.3 15,-0.1 14,-0.1 -0.527 38.4-165.3-152.8 138.9 -3.4 -3.7 6.9 28 28 A V - 0 0 17 -12,-1.7 -13,-0.4 -2,-0.1 2,-0.3 -0.289 6.5-178.4 -73.9 167.7 -3.3 -0.4 5.2 29 29 A c - 0 0 7 4,-0.5 2,-1.0 -14,-0.2 4,-0.0 -0.801 64.9 -39.8-135.2-156.1 -0.6 1.3 3.5 30 30 A A S S- 0 0 53 -2,-0.3 2,-2.5 1,-0.2 15,-0.1 -0.535 88.2-106.1 -67.4 101.1 -0.5 4.7 1.8 31 31 A E S S+ 0 0 159 -2,-1.0 -1,-0.2 1,-0.3 0, 0.0 0.055 121.0 51.2 -69.6 11.6 -3.7 3.8 0.6 32 32 A G S S+ 0 0 45 -2,-2.5 14,-0.6 2,-0.0 2,-0.4 -0.202 92.4 93.4-106.8 35.7 -2.8 3.1 -2.9 33 33 A F + 0 0 29 12,-0.3 -4,-0.5 11,-0.1 10,-0.1 -0.999 64.2 143.0-115.6 127.0 -0.2 0.9 -1.3 34 34 A A - 0 0 19 -2,-0.4 10,-0.5 -6,-0.1 13,-0.2 -0.983 49.4 -24.9 179.6 158.4 -1.9 -2.4 -1.2 35 35 A P - 0 0 97 0, 0.0 8,-0.2 0, 0.0 12,-0.1 0.188 58.0-175.6 -51.1 85.4 -1.7 -6.1 -1.5 36 36 A I - 0 0 23 1,-0.2 2,-3.5 3,-0.1 5,-0.1 0.075 59.9 -40.2 -29.9 163.2 1.3 -6.8 -3.7 37 37 A P S S- 0 0 119 0, 0.0 2,-0.4 0, 0.0 -1,-0.2 -0.344 117.8 -21.3 -36.3 52.8 2.0 -10.3 -4.6 38 38 A H S S+ 0 0 107 -2,-3.5 3,-0.2 1,-0.2 4,-0.0 -0.995 83.9 83.2 168.9-102.6 1.2 -11.7 -1.5 39 39 A E > - 0 0 95 -2,-0.4 2,-3.5 1,-0.2 3,-2.5 0.300 65.1-114.7 -45.0 133.7 0.8 -11.5 2.1 40 40 A P T 3 S+ 0 0 132 0, 0.0 -1,-0.2 0, 0.0 0, 0.0 -0.389 109.7 48.1 -60.9 61.3 -2.6 -10.3 3.4 41 41 A H T 3 S+ 0 0 37 -2,-3.5 -26,-0.1 -3,-0.2 -2,-0.1 0.103 90.2 116.6-136.5 -17.8 -1.2 -7.3 4.9 42 42 A R < - 0 0 58 -3,-2.5 2,-0.3 -8,-0.1 -13,-0.1 0.180 37.9-172.1 -82.3 161.4 1.0 -5.8 2.3 43 43 A c + 0 0 5 -9,-0.2 3,-0.1 -8,-0.2 -1,-0.1 -0.800 18.5 155.7-102.6 165.1 1.6 -3.0 0.1 44 44 A Q S S- 0 0 88 -10,-0.5 3,-0.1 -2,-0.3 -11,-0.1 0.133 90.1 -68.9 175.7 79.4 4.2 -2.9 -2.5 45 45 A M - 0 0 20 1,-0.1 2,-0.6 -9,-0.1 -12,-0.3 0.866 57.5 -93.3 -38.2-170.6 2.3 -0.7 -3.8 46 46 A F + 0 0 86 -14,-0.6 -1,-0.1 -3,-0.1 -10,-0.1 -0.708 53.1 161.9 -50.1 119.5 -1.0 -1.6 -5.1 47 47 A d - 0 0 31 -2,-0.6 2,-0.4 -13,-0.2 4,-0.2 -0.490 14.8-174.4-139.0 80.6 -0.2 -2.2 -8.7 48 48 A N - 0 0 106 3,-0.1 32,-0.1 1,-0.1 34,-0.1 -0.581 34.6-112.9 -76.5 125.8 -3.2 -4.2 -9.8 49 49 A Q S S+ 0 0 135 -2,-0.4 3,-0.1 1,-0.1 -1,-0.1 -0.303 90.8 107.0 -88.5 150.7 -2.3 -5.1 -13.3 50 50 A T S S- 0 0 122 -2,-0.1 -1,-0.1 -3,-0.0 -2,-0.1 -0.418 117.5 -63.1-127.7 80.2 -2.5 -5.2 -16.5 51 51 A A - 0 0 39 1,-0.2 30,-0.1 -4,-0.2 -3,-0.1 0.778 40.0-151.0 38.2 123.7 0.4 -3.3 -15.7 52 52 A d - 0 0 3 28,-0.2 2,-0.3 -5,-0.1 -1,-0.2 -0.825 37.4-176.4 -51.1 120.3 0.4 -0.4 -14.1 53 53 A P - 0 0 43 0, 0.0 26,-2.6 0, 0.0 29,-0.1 -0.663 36.2 -91.3 -85.9 169.1 3.4 0.9 -15.7 54 54 A A S S+ 0 0 12 24,-0.3 25,-0.2 -2,-0.3 27,-0.1 0.763 72.0 126.2 -12.5-150.5 5.2 3.9 -15.2 55 55 A D - 0 0 92 -3,-0.1 9,-0.1 25,-0.1 22,-0.0 0.981 45.2-170.1 45.2 60.9 3.7 6.5 -17.5 56 56 A e - 0 0 33 7,-0.1 8,-0.1 20,-0.1 23,-0.1 0.538 32.8 -48.8 -32.1-157.1 3.0 8.9 -14.9 57 57 A D - 0 0 78 6,-0.4 -1,-0.1 1,-0.2 24,-0.0 0.202 33.9-123.7 -78.1-172.8 1.0 11.9 -15.8 58 58 A P S S+ 0 0 110 0, 0.0 3,-0.4 0, 0.0 -1,-0.2 0.692 91.3 4.4 -66.1 -88.0 0.7 14.5 -18.3 59 59 A N S S+ 0 0 147 1,-0.2 0, 0.0 2,-0.1 0, 0.0 0.672 118.7 43.2 -95.5 -35.4 0.8 17.6 -16.5 60 60 A T S S- 0 0 94 2,-0.0 -1,-0.2 1,-0.0 0, 0.0 0.257 70.0-150.5 -98.8 7.6 1.4 17.9 -12.8 61 61 A Q + 0 0 153 -3,-0.4 -2,-0.1 1,-0.2 -5,-0.0 0.588 50.9 139.0 -32.6 75.7 4.1 15.5 -12.4 62 62 A A + 0 0 77 1,-0.1 2,-0.4 0, 0.0 -1,-0.2 -0.023 63.8 129.6 -64.7 26.2 3.0 14.7 -8.9 63 63 A S + 0 0 29 1,-0.2 -6,-0.4 -5,-0.1 -2,-0.1 -0.900 20.2 48.9-164.1 84.2 4.0 11.7 -10.7 64 64 A e S S- 0 0 22 -2,-0.4 -1,-0.2 -8,-0.1 15,-0.1 -0.308 72.5-176.6-137.0 112.3 5.7 9.1 -10.7 65 65 A E + 0 0 118 1,-0.2 13,-0.1 13,-0.2 14,-0.1 0.855 50.6 76.3 -51.0 -77.4 4.5 8.2 -7.3 66 66 A f >> + 0 0 15 12,-0.4 4,-3.1 2,-0.1 3,-0.6 -0.145 60.0 112.9 -81.9 40.2 5.7 5.3 -5.6 67 67 A P T 34 + 0 0 45 0, 0.0 3,-0.2 0, 0.0 -3,-0.1 -0.447 68.9 56.0 -54.4 160.3 8.7 6.7 -4.8 68 68 A E T 34 S+ 0 0 176 1,-0.3 -2,-0.1 -2,-0.3 2,-0.1 0.771 119.2 35.6 -20.7 79.2 8.2 6.7 -1.3 69 69 A G T <4 S+ 0 0 30 -3,-0.6 -1,-0.3 -4,-0.1 -3,-0.1 -0.347 101.5 152.5 -96.1 -53.1 7.7 3.7 -1.6 70 70 A Y < + 0 0 150 -4,-3.1 -2,-0.1 -3,-0.2 -25,-0.0 0.783 34.2 143.9 22.6 138.8 10.1 3.0 -4.2 71 71 A I + 0 0 147 -5,-0.2 -1,-0.1 -27,-0.1 -5,-0.0 -0.406 55.9 168.5-129.1 70.0 11.8 0.4 -5.0 72 72 A L + 0 0 49 -6,-0.3 3,-0.0 1,-0.1 6,-0.0 0.124 20.5 94.5 -3.8 132.9 11.2 1.6 -8.4 73 73 A D + 0 0 95 -3,-0.0 -1,-0.1 0, 0.0 0, 0.0 0.265 37.9 103.8 150.0 35.0 12.3 1.0 -11.5 74 74 A D S S- 0 0 126 -20,-0.0 -2,-0.0 0, 0.0 0, 0.0 0.748 119.0 -17.7 -29.2-136.4 10.8 -1.3 -13.9 75 75 A G S S- 0 0 53 1,-0.1 -3,-0.0 -21,-0.0 -20,-0.0 0.975 112.5 -78.5 -33.3 -75.7 9.3 1.2 -16.2 76 76 A F S S- 0 0 111 -21,-0.0 -20,-0.1 -20,-0.0 -1,-0.1 0.016 89.9-151.4 175.3 38.2 9.5 3.9 -13.7 77 77 A I + 0 0 31 -25,-0.1 -23,-0.2 -11,-0.1 -5,-0.1 0.854 51.9 68.5 -78.6-162.0 6.8 2.3 -12.5 78 78 A f + 0 0 10 -26,-0.1 -12,-0.4 -13,-0.1 -24,-0.3 0.882 60.6 96.3 102.0 52.1 3.7 2.3 -10.7 79 79 A T - 0 0 44 -26,-2.6 -25,-0.1 -25,-0.2 -32,-0.1 -0.028 52.7-146.9 173.8 66.7 0.7 4.0 -12.2 80 80 A D - 0 0 58 1,-0.2 -28,-0.2 -32,-0.1 3,-0.1 0.044 16.6-170.7 27.0 77.0 -1.7 2.5 -14.1 81 81 A I + 0 0 121 -30,-0.1 -1,-0.2 -27,-0.1 -29,-0.1 0.147 65.6 125.7 -62.4 11.1 -3.2 4.5 -16.8 82 82 A D 0 0 56 1,-0.2 -1,-0.1 -29,-0.1 -30,-0.1 0.817 360.0 360.0 -57.4 -73.8 -5.2 1.4 -16.4 83 83 A E 0 0 228 -3,-0.1 -1,-0.2 0, 0.0 -2,-0.1 0.562 360.0 360.0 -44.3 360.0 -8.8 1.3 -15.9