==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN/RNA 01-SEP-98 1DRZ . COMPND 2 MOLECULE: RNA (HEPATITIS DELTA VIRUS GENOMIC RIBOZYME); . SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS DELTA VIRUS; . AUTHOR A.R.FERRE-D'AMARE,K.ZHOU,J.A.DOUDNA . 95 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6089.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 63.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 21.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 8.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 9.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 22 23.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 4 A P 0 0 164 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-129.4 9.4 48.5 15.8 2 5 A E - 0 0 133 80,-0.1 2,-0.2 83,-0.0 80,-0.1 -0.969 360.0-142.2 174.9 179.7 8.2 50.3 12.6 3 6 A T - 0 0 50 -2,-0.3 80,-0.2 1,-0.1 3,-0.1 -0.656 41.1 -39.3-144.6-165.6 5.5 52.3 10.9 4 7 A R S S- 0 0 194 -2,-0.2 -1,-0.1 1,-0.2 0, 0.0 -0.305 73.3 -81.9 -66.9 150.1 3.6 53.0 7.7 5 8 A P + 0 0 78 0, 0.0 2,-0.3 0, 0.0 -1,-0.2 -0.031 56.4 175.1 -49.9 154.7 5.3 53.0 4.3 6 9 A N - 0 0 10 53,-0.2 50,-0.1 -3,-0.1 56,-0.1 -0.982 45.1-116.0-160.3 157.0 7.1 56.2 3.4 7 10 A H S S+ 0 0 27 -2,-0.3 49,-2.6 55,-0.1 2,-0.4 0.770 101.0 65.1 -67.5 -24.9 9.4 57.6 0.6 8 11 A T E S-A 55 0A 0 47,-0.2 76,-2.8 76,-0.1 2,-0.4 -0.811 70.9-151.9-104.3 138.3 12.2 57.9 3.2 9 12 A I E -AB 54 83A 0 45,-2.4 45,-2.3 -2,-0.4 2,-0.6 -0.893 11.1-142.4-108.2 137.0 13.9 55.0 5.0 10 13 A Y E -AB 53 82A 46 72,-3.3 72,-2.1 -2,-0.4 2,-0.4 -0.895 20.5-170.3-100.7 118.3 15.4 55.6 8.5 11 14 A I E +AB 52 81A 0 41,-3.4 41,-2.2 -2,-0.6 2,-0.3 -0.880 11.5 162.3-109.9 136.4 18.7 53.7 9.0 12 15 A N E + B 0 80A 27 68,-2.7 68,-2.4 -2,-0.4 39,-0.2 -0.866 45.4 66.6-143.5-178.8 20.5 53.4 12.3 13 16 A N S S+ 0 0 52 37,-0.5 2,-0.2 -2,-0.3 38,-0.1 0.818 72.2 157.1 71.3 32.7 23.1 51.3 14.1 14 17 A L - 0 0 2 36,-2.0 2,-0.4 -3,-0.2 -1,-0.3 -0.638 55.6 -89.2 -90.8 147.8 25.6 52.9 11.6 15 18 A N > - 0 0 34 59,-0.3 3,-1.2 -2,-0.2 35,-0.2 -0.394 35.1-158.3 -58.7 112.4 29.3 53.1 12.4 16 19 A E T 3 S+ 0 0 100 -2,-0.4 -1,-0.2 1,-0.2 34,-0.1 0.657 81.9 71.3 -70.0 -16.2 29.7 56.4 14.1 17 20 A K T 3 S+ 0 0 187 2,-0.1 2,-0.4 33,-0.0 -1,-0.2 0.626 76.7 96.4 -77.8 -11.5 33.4 56.7 13.3 18 21 A I S < S- 0 0 20 -3,-1.2 32,-0.2 1,-0.1 -4,-0.0 -0.667 79.4-115.9 -85.9 131.5 32.8 57.4 9.6 19 22 A K > - 0 0 149 -2,-0.4 4,-2.5 1,-0.1 5,-0.2 -0.155 24.8-110.3 -60.3 154.9 32.7 61.0 8.4 20 23 A K H > S+ 0 0 104 1,-0.2 4,-2.2 2,-0.2 5,-0.2 0.903 113.0 47.3 -52.7 -54.1 29.6 62.6 7.0 21 24 A D H > S+ 0 0 98 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.870 115.0 45.2 -60.2 -39.4 30.7 62.9 3.4 22 25 A E H > S+ 0 0 90 2,-0.2 4,-2.7 1,-0.2 5,-0.3 0.932 111.2 52.8 -71.6 -46.0 32.0 59.4 3.1 23 26 A L H X S+ 0 0 9 -4,-2.5 4,-1.4 1,-0.2 -2,-0.2 0.918 108.6 51.0 -54.5 -46.2 29.0 57.9 4.8 24 27 A K H X S+ 0 0 63 -4,-2.2 4,-1.6 -5,-0.2 -1,-0.2 0.913 112.9 45.8 -55.4 -48.9 26.7 59.7 2.3 25 28 A K H X S+ 0 0 128 -4,-1.7 4,-2.3 1,-0.2 -2,-0.2 0.884 109.4 52.0 -65.1 -44.9 28.6 58.4 -0.7 26 29 A S H X S+ 0 0 31 -4,-2.7 4,-1.5 1,-0.2 -1,-0.2 0.777 109.0 53.8 -65.0 -25.3 28.9 54.8 0.5 27 30 A L H X S+ 0 0 0 -4,-1.4 4,-3.0 -5,-0.3 5,-0.3 0.907 106.6 49.1 -75.4 -40.5 25.2 54.8 1.0 28 31 A H H X S+ 0 0 98 -4,-1.6 4,-2.7 1,-0.2 5,-0.2 0.927 109.9 54.5 -61.3 -43.5 24.4 56.0 -2.5 29 32 A A H < S+ 0 0 71 -4,-2.3 -1,-0.2 1,-0.2 4,-0.2 0.893 115.7 37.5 -54.2 -45.0 26.8 53.2 -3.7 30 33 A I H < S+ 0 0 43 -4,-1.5 -2,-0.2 1,-0.1 -1,-0.2 0.810 127.0 33.1 -77.7 -36.7 24.7 50.6 -1.8 31 34 A F H >< S+ 0 0 0 -4,-3.0 3,-2.1 1,-0.1 4,-0.4 0.633 86.5 90.7-101.8 -12.9 21.2 52.0 -2.4 32 35 A S G >< S+ 0 0 54 -4,-2.7 3,-1.3 -5,-0.3 -1,-0.1 0.804 81.2 67.0 -57.1 -24.4 21.2 53.6 -5.8 33 36 A R G 3 S+ 0 0 168 1,-0.3 -1,-0.3 -5,-0.2 -2,-0.1 0.778 89.0 64.0 -68.0 -24.1 20.1 50.3 -7.3 34 37 A F G < S- 0 0 14 -3,-2.1 2,-0.3 1,-0.2 -1,-0.3 0.615 120.9 -69.9 -77.8 -9.4 16.7 50.4 -5.5 35 38 A G S < S- 0 0 26 -3,-1.3 -1,-0.2 -4,-0.4 2,-0.1 -0.863 75.8 -29.7 147.2-178.4 15.6 53.5 -7.5 36 39 A Q - 0 0 113 -2,-0.3 21,-2.0 -3,-0.1 2,-0.5 -0.427 55.9-147.1 -68.1 140.5 16.2 57.2 -7.8 37 40 A I E -C 56 0A 22 19,-0.2 19,-0.2 1,-0.1 3,-0.1 -0.945 13.4-167.0-115.0 124.2 17.4 58.9 -4.6 38 41 A L E - 0 0 50 17,-2.9 2,-0.3 -2,-0.5 18,-0.2 0.867 67.3 -39.1 -76.5 -38.0 16.4 62.4 -3.9 39 42 A D E -C 55 0A 65 16,-1.1 16,-2.5 2,-0.0 2,-0.4 -0.973 43.4-129.4-177.5 166.6 18.9 62.9 -1.1 40 43 A I E -C 54 0A 9 -2,-0.3 2,-0.6 14,-0.2 14,-0.2 -0.993 21.7-154.9-131.5 121.8 20.6 61.4 2.0 41 44 A L E +C 53 0A 70 12,-2.2 12,-1.8 -2,-0.4 2,-0.3 -0.894 19.7 167.4-106.8 125.3 20.7 63.3 5.2 42 45 A V E +C 52 0A 13 -2,-0.6 2,-0.3 10,-0.2 10,-0.1 -0.995 9.0 177.7-134.8 138.4 23.4 62.6 7.7 43 46 A S - 0 0 54 8,-0.5 8,-0.4 5,-0.5 7,-0.2 -0.981 20.8-156.8-136.8 146.9 24.5 64.5 10.9 44 47 A R + 0 0 111 -2,-0.3 5,-0.2 5,-0.1 -1,-0.0 0.294 52.6 127.4-107.8 12.9 27.2 63.6 13.3 45 48 A S S > S- 0 0 50 1,-0.1 4,-1.8 3,-0.1 -2,-0.1 -0.104 79.1 -95.6 -61.7 166.5 25.8 65.6 16.2 46 49 A L T 4 S+ 0 0 118 1,-0.2 -1,-0.1 2,-0.2 -3,-0.0 0.806 123.4 38.1 -56.0 -35.7 25.2 63.9 19.6 47 50 A K T 4 S+ 0 0 150 1,-0.1 -1,-0.2 3,-0.0 -4,-0.0 0.851 122.5 39.6 -85.6 -35.8 21.5 63.1 18.8 48 51 A X T >4 S+ 0 0 77 2,-0.0 3,-1.1 -6,-0.0 -5,-0.5 0.499 81.9 118.5 -97.7 -0.4 21.8 62.2 15.2 49 52 A R T 3< S+ 0 0 102 -4,-1.8 -5,-0.1 1,-0.2 -33,-0.1 -0.251 75.2 26.0 -66.5 150.5 25.0 60.2 14.9 50 53 A G T 3 S+ 0 0 10 1,-0.2 -36,-2.0 -35,-0.2 -37,-0.5 0.554 107.4 99.6 74.8 9.1 24.9 56.6 13.6 51 54 A Q < + 0 0 34 -3,-1.1 -8,-0.5 -8,-0.4 2,-0.3 -0.908 45.8 179.6-128.7 155.5 21.7 57.5 11.8 52 55 A A E -AC 11 42A 0 -41,-2.2 -41,-3.4 -2,-0.3 2,-0.5 -0.990 18.7-146.9-154.7 147.5 20.7 58.3 8.2 53 56 A F E -AC 10 41A 68 -12,-1.8 -12,-2.2 -2,-0.3 2,-0.7 -0.974 12.8-164.1-116.4 118.4 17.6 59.1 6.2 54 57 A V E -AC 9 40A 0 -45,-2.3 -45,-2.4 -2,-0.5 2,-0.7 -0.918 8.8-155.9-107.8 114.4 17.6 57.9 2.5 55 58 A I E -AC 8 39A 1 -16,-2.5 -17,-2.9 -2,-0.7 -16,-1.1 -0.799 9.3-166.6 -94.5 107.6 14.9 59.7 0.5 56 59 A F E - C 0 37A 0 -49,-2.6 -19,-0.2 -2,-0.7 3,-0.0 -0.666 25.8-133.4 -93.0 148.9 13.6 57.8 -2.5 57 60 A K S S+ 0 0 88 -21,-2.0 2,-0.4 -2,-0.3 -20,-0.1 0.729 95.7 41.2 -70.3 -22.0 11.5 59.3 -5.3 58 61 A E S >> S- 0 0 114 -22,-0.4 3,-1.2 -51,-0.2 4,-1.2 -0.992 73.9-139.7-132.5 132.4 9.2 56.3 -5.2 59 62 A V H 3> S+ 0 0 45 -2,-0.4 4,-2.5 1,-0.3 -53,-0.2 0.765 102.1 63.4 -54.1 -31.3 7.9 54.4 -2.2 60 63 A S H 3> S+ 0 0 79 2,-0.2 4,-2.4 1,-0.2 -1,-0.3 0.871 101.2 53.4 -63.9 -34.1 8.3 51.0 -3.8 61 64 A S H <> S+ 0 0 14 -3,-1.2 4,-2.9 2,-0.2 5,-0.2 0.940 109.3 47.1 -63.7 -48.7 12.1 51.8 -3.9 62 65 A A H X S+ 0 0 0 -4,-1.2 4,-1.8 1,-0.2 -2,-0.2 0.884 112.0 51.9 -59.8 -40.0 12.1 52.4 -0.2 63 66 A T H X S+ 0 0 25 -4,-2.5 4,-1.5 2,-0.2 -1,-0.2 0.901 113.6 42.4 -64.4 -43.2 10.0 49.3 0.4 64 67 A N H X S+ 0 0 81 -4,-2.4 4,-2.7 2,-0.2 5,-0.3 0.910 112.7 52.1 -70.9 -43.1 12.5 47.1 -1.6 65 68 A A H X S+ 0 0 0 -4,-2.9 4,-2.0 1,-0.2 -1,-0.2 0.834 109.5 52.9 -60.8 -34.1 15.6 48.7 -0.1 66 69 A L H < S+ 0 0 23 -4,-1.8 4,-0.4 -5,-0.2 -1,-0.2 0.871 112.8 41.5 -71.1 -38.3 14.1 48.0 3.3 67 70 A R H < S+ 0 0 196 -4,-1.5 3,-0.5 2,-0.1 -2,-0.2 0.931 120.0 42.7 -75.3 -44.4 13.5 44.3 2.7 68 71 A S H < S+ 0 0 59 -4,-2.7 -2,-0.2 1,-0.2 -3,-0.2 0.885 117.7 41.4 -69.1 -44.9 16.8 43.7 0.9 69 72 A X S >< S+ 0 0 9 -4,-2.0 3,-2.0 -5,-0.3 2,-0.3 0.299 73.9 134.0 -92.6 11.4 19.2 45.6 3.1 70 73 A Q T 3 S- 0 0 97 -3,-0.5 10,-0.2 -4,-0.4 -4,-0.0 -0.445 87.1 -0.2 -63.9 120.3 17.9 44.8 6.5 71 74 A G T 3 S+ 0 0 34 8,-2.6 -1,-0.3 -2,-0.3 9,-0.1 0.550 87.3 168.2 78.0 9.7 21.0 43.9 8.6 72 75 A F < - 0 0 79 -3,-2.0 7,-2.2 7,-0.2 2,-0.8 -0.354 43.1-116.2 -61.4 127.1 23.4 44.5 5.8 73 76 A P E +D 78 0B 94 0, 0.0 2,-0.5 0, 0.0 3,-0.1 -0.567 45.5 172.8 -68.6 107.1 27.0 44.5 7.2 74 77 A F E > -D 77 0B 16 3,-2.6 3,-1.6 -2,-0.8 -59,-0.3 -0.979 69.0 -11.7-123.8 124.1 28.2 48.1 6.5 75 78 A Y T 3 S- 0 0 56 -2,-0.5 -1,-0.2 1,-0.3 -57,-0.1 0.898 132.2 -54.6 50.7 40.8 31.4 49.3 7.9 76 79 A D T 3 S+ 0 0 159 1,-0.1 -1,-0.3 -3,-0.1 0, 0.0 0.545 119.1 100.3 72.7 11.3 31.4 46.1 10.1 77 80 A K E < S-D 74 0B 60 -3,-1.6 -3,-2.6 -5,-0.1 2,-0.6 -0.988 78.4-108.9-132.6 139.9 28.0 46.7 11.7 78 81 A P E -D 73 0B 76 0, 0.0 -6,-0.2 0, 0.0 2,-0.1 -0.522 39.1-133.3 -67.5 110.7 24.5 45.3 11.0 79 82 A X - 0 0 1 -7,-2.2 -8,-2.6 -2,-0.6 2,-0.5 -0.427 14.8-149.3 -67.4 133.7 22.5 48.1 9.4 80 83 A R E -B 12 0A 138 -68,-2.4 -68,-2.7 -10,-0.2 2,-0.4 -0.946 16.1-171.6-110.0 125.1 18.9 48.6 10.9 81 84 A I E +B 11 0A 6 -2,-0.5 2,-0.3 -70,-0.2 -70,-0.2 -0.921 15.6 155.5-122.5 140.5 16.2 50.0 8.6 82 85 A Q E -B 10 0A 50 -72,-2.1 -72,-3.3 -2,-0.4 2,-0.2 -0.910 50.1 -91.4-145.9 165.6 12.7 51.2 9.2 83 86 A Y E -B 9 0A 22 -2,-0.3 -74,-0.3 -74,-0.3 -80,-0.1 -0.541 54.9 -98.9 -76.3 147.8 10.4 53.6 7.2 84 87 A A - 0 0 4 -76,-2.8 -76,-0.1 -2,-0.2 -1,-0.1 -0.439 24.7-130.3 -68.8 145.6 10.8 57.1 8.5 85 88 A K S S+ 0 0 165 -2,-0.1 2,-0.3 -82,-0.1 -1,-0.1 0.813 88.9 27.6 -65.6 -30.9 8.0 58.2 10.9 86 89 A T S S- 0 0 105 -80,-0.0 -78,-0.1 -78,-0.0 2,-0.1 -0.923 92.5 -95.3-131.4 156.4 7.3 61.4 9.0 87 90 A D - 0 0 66 -2,-0.3 2,-0.2 1,-0.1 -2,-0.0 -0.364 42.1-116.4 -67.8 148.5 7.7 62.6 5.3 88 91 A S >> - 0 0 21 1,-0.1 4,-1.9 -2,-0.1 3,-1.0 -0.541 23.6-113.9 -84.1 153.4 10.9 64.5 4.5 89 92 A D H 3> S+ 0 0 133 1,-0.3 4,-3.5 2,-0.2 5,-0.1 0.827 114.9 60.1 -54.1 -38.3 10.6 68.1 3.4 90 93 A I H 34 S+ 0 0 71 1,-0.2 -1,-0.3 2,-0.2 -3,-0.0 0.846 110.0 43.4 -59.3 -35.4 11.9 67.4 -0.1 91 94 A I H X> S+ 0 0 0 -3,-1.0 4,-1.0 2,-0.2 3,-0.9 0.859 117.2 43.3 -78.1 -39.8 8.9 65.0 -0.5 92 95 A A H 3< S+ 0 0 58 -4,-1.9 -2,-0.2 1,-0.2 -3,-0.2 0.874 102.7 68.6 -73.6 -36.0 6.3 67.3 1.0 93 96 A K T 3< S+ 0 0 186 -4,-3.5 -1,-0.2 -5,-0.2 -2,-0.2 0.537 108.7 39.5 -60.4 -5.2 7.8 70.2 -0.9 94 97 A X T <4 0 0 93 -3,-0.9 -2,-0.2 1,-0.2 -3,-0.1 0.713 360.0 360.0-103.9 -87.7 6.4 68.5 -4.0 95 98 A K < 0 0 179 -4,-1.0 -1,-0.2 0, 0.0 -4,-0.0 -0.262 360.0 360.0 -48.0 360.0 3.0 66.9 -3.6